Experiment set1IT053 for Rahnella sp. WP5

Compare to:

L-Serine nitrogen source; RCH2 media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS02520 -5.0 -4.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS12400 -4.9 -8.2 RNA polymerase factor sigma-54 compare
EX31_RS22625 -4.4 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS02515 -4.4 -6.6 PAS domain-containing protein compare
EX31_RS11460 -4.3 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS08745 -4.3 -3.0 50S ribosomal protein L9 compare
EX31_RS20495 -4.1 -12.4 outer membrane protein assembly factor BamB compare
EX31_RS03695 -4.1 -6.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS22250 -4.1 -5.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS23415 -4.1 -10.5 citrate synthase compare
EX31_RS18540 -4.1 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09980 -4.0 -8.4 tryptophan synthase subunit alpha compare
EX31_RS23440 -3.8 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS15880 -3.8 -10.9 nitrogen regulation protein NR(I) compare
EX31_RS02690 -3.7 -8.0 pyrroline-5-carboxylate reductase compare
EX31_RS03940 -3.7 -14.4 homoserine kinase compare
EX31_RS13445 -3.7 -19.2 argininosuccinate synthase compare
EX31_RS15005 -3.6 -18.5 dihydroxy-acid dehydratase compare
EX31_RS02530 -3.6 -6.0 ABC transporter ATP-binding protein compare
EX31_RS09975 -3.6 -10.4 tryptophan synthase subunit beta compare
EX31_RS03685 -3.6 -16.0 3-isopropylmalate dehydrogenase compare
EX31_RS03935 -3.5 -14.3 threonine synthase compare
EX31_RS11465 -3.5 -9.3 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS12515 -3.5 -26.8 glutamate synthase large subunit compare
EX31_RS03690 -3.5 -14.6 3-isopropylmalate dehydratase large subunit compare
EX31_RS03830 -3.5 -20.6 carbamoyl-phosphate synthase large subunit compare
EX31_RS13160 -3.5 -14.1 amino-acid N-acetyltransferase compare
EX31_RS23245 -3.5 -22.2 asparagine synthase B compare
EX31_RS14180 -3.5 -17.2 argininosuccinate lyase compare
EX31_RS24385 -3.4 -5.6 dihydroorotase compare
EX31_RS03250 -3.4 -10.8 RNA polymerase-binding protein DksA compare
EX31_RS13275 -3.4 -14.8 diaminopimelate decarboxylase compare
EX31_RS12825 -3.3 -9.6 ornithine carbamoyltransferase compare
EX31_RS05785 -3.3 -5.0 superoxide dismutase [Mn] compare
EX31_RS20980 -3.3 -8.5 glutamate 5-kinase compare
EX31_RS11735 -3.3 -12.4 homoserine O-succinyltransferase compare
EX31_RS15875 -3.3 -14.8 nitrogen regulation protein NR(II) compare
EX31_RS07585 -3.3 -10.8 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS15020 -3.3 -15.2 ketol-acid reductoisomerase compare
EX31_RS12510 -3.2 -15.2 FAD-dependent oxidoreductase compare
EX31_RS14215 -3.2 -17.6 cystathionine gamma-synthase compare
EX31_RS14340 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15870 -3.2 -4.3 glutamate--ammonia ligase compare
EX31_RS22245 -3.2 -5.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS20975 -3.2 -8.8 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS16860 -3.2 -19.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS11440 -3.1 -8.7 histidinol dehydrogenase compare
EX31_RS18530 -3.1 -14.5 leucine-responsive transcriptional regulator Lrp compare
EX31_RS14200 -3.1 -15.9 phosphoenolpyruvate carboxylase compare
EX31_RS14185 -3.1 -8.5 acetylglutamate kinase compare
EX31_RS07590 -3.1 -3.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09970 -3.0 -9.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS03945 -3.0 -20.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09955 -3.0 -10.0 anthranilate synthase component 1 compare
EX31_RS09965 -3.0 -9.4 anthranilate phosphoribosyltransferase compare
EX31_RS23500 -3.0 -5.9 peptidoglycan-associated lipoprotein Pal compare
EX31_RS09960 -2.9 -7.2 glutamine amidotransferase compare
EX31_RS14190 -2.9 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS23490 -2.8 -3.8 cell envelope integrity protein TolA compare
EX31_RS14205 -2.8 -10.7 methylenetetrahydrofolate reductase compare
EX31_RS20175 -2.8 -10.0 cysteine synthase A compare
EX31_RS09890 -2.8 -13.3 HTH-type transcriptional regulator CysB compare
EX31_RS03835 -2.7 -9.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS13045 -2.7 -15.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22750 -2.7 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS21895 -2.7 -18.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS22430 -2.7 -3.1 hemolysin expression modulator Hha compare
EX31_RS11445 -2.7 -10.0 histidinol-phosphate transaminase compare
EX31_RS11455 -2.7 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11450 -2.6 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS03680 -2.6 -11.4 2-isopropylmalate synthase compare
EX31_RS07560 -2.6 -17.7 ATP-dependent chaperone ClpB compare
EX31_RS22695 -2.5 -9.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS07955 -2.5 -15.9 GTP diphosphokinase compare
EX31_RS15010 -2.4 -11.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS16855 -2.3 -12.5 phosphoribosylamine--glycine ligase compare
EX31_RS14500 -2.3 -10.2 orotate phosphoribosyltransferase compare
EX31_RS09855 -2.3 -5.0 orotidine-5'-phosphate decarboxylase compare
EX31_RS25375 -2.3 -2.6 ilv operon leader peptide compare
EX31_RS14310 -2.3 -5.5 6-phosphofructokinase compare
EX31_RS09290 -2.3 -3.3 hypothetical protein compare
EX31_RS19570 -2.3 -11.4 amidophosphoribosyltransferase compare
EX31_RS20450 -2.2 -7.8 IMP dehydrogenase compare
EX31_RS11470 -2.2 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS20735 -2.2 -5.2 exodeoxyribonuclease V subunit beta compare
EX31_RS22620 -2.1 -5.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS18095 -2.1 -7.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS08150 -2.1 -13.0 inorganic triphosphatase compare
EX31_RS14335 -2.1 -2.8 serine O-acetyltransferase compare
EX31_RS18045 -2.0 -3.3 macrodomain Ter protein MatP compare
EX31_RS18570 -2.0 -2.3 cold shock-like protein CspD compare
EX31_RS18255 -2.0 -3.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23495 -2.0 -7.0 Tol-Pal system protein TolB compare
EX31_RS12785 -1.9 -9.6 aspartate carbamoyltransferase compare
EX31_RS22740 -1.8 -9.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS07900 -1.8 -12.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS23480 -1.8 -4.4 Tol-Pal system protein TolQ compare
EX31_RS02385 -1.8 -1.7 hypothetical protein compare
EX31_RS07895 -1.7 -7.6 phosphoadenylyl-sulfate reductase compare
EX31_RS14990 -1.7 -10.6 acetolactate synthase 2 catalytic subunit compare
EX31_RS07870 -1.7 -5.4 adenylyl-sulfate kinase compare
EX31_RS07475 -1.7 -1.8 hypothetical protein compare
EX31_RS06065 -1.6 -6.6 phosphate ABC transporter permease PstC compare
EX31_RS17640 -1.6 -2.1 TetR/AcrR family transcriptional regulator compare
EX31_RS03480 -1.6 -4.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS18525 -1.6 -4.0 DNA translocase FtsK compare
EX31_RS07875 -1.6 -12.4 sulfate adenylyltransferase subunit CysN compare
EX31_RS06680 -1.6 -2.0 cellulose biosynthesis protein BcsF compare
EX31_RS15975 -1.6 -2.1 peptide deformylase compare
EX31_RS11110 -1.6 -2.1 RidA family protein compare
EX31_RS19610 -1.6 -6.0 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS07880 -1.5 -11.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS03775 -1.5 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS25370 -1.5 -8.8 HTH-type transcriptional regulator MetR compare
EX31_RS23485 -1.5 -2.5 colicin uptake protein TolR compare
EX31_RS07905 -1.5 -10.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS14620 -1.5 -2.2 SCP2 domain-containing protein compare
EX31_RS08720 -1.5 -9.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS04925 -1.4 -2.6 Fe-S biogenesis protein NfuA compare
EX31_RS19600 -1.4 -5.9 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS09205 -1.4 -2.7 siderophore-iron reductase FhuF compare
EX31_RS06055 -1.4 -3.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS19205 -1.4 -3.3 50S ribosomal protein L25 compare
EX31_RS06070 -1.3 -6.4 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS09895 -1.3 -3.3 type I DNA topoisomerase compare
EX31_RS19420 -1.3 -2.6 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS04105 -1.3 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS19395 -1.3 -2.8 NADH-quinone oxidoreductase subunit J compare
EX31_RS08535 -1.3 -2.2 30S ribosome-binding factor RbfA compare
EX31_RS06620 -1.3 -3.2 electron transport complex subunit RsxA compare
EX31_RS10180 -1.3 -1.1 type II 3-dehydroquinate dehydratase compare
EX31_RS15000 -1.2 -8.3 branched-chain amino acid transaminase compare
EX31_RS20190 -1.2 -1.6 PTS glucose transporter subunit IIA compare
EX31_RS21850 -1.2 -1.8 pyridoxine 5'-phosphate synthase compare
EX31_RS20655 -1.2 -2.5 hypothetical protein compare
EX31_RS09565 -1.2 -1.2 flagellar hook-length control protein FliK compare
EX31_RS04710 -1.1 -3.1 adenine-specific DNA-methyltransferase compare
EX31_RS12175 -1.1 -2.7 DNA-binding transcriptional regulator Fis compare
EX31_RS03400 -1.1 -4.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS04320 -1.1 -1.6 hypothetical protein compare
EX31_RS03790 -1.1 -2.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS01280 -1.1 -1.8 SgcJ/EcaC family oxidoreductase compare
EX31_RS18785 -1.1 -3.9 DUF2384 domain-containing protein compare
EX31_RS18625 -1.1 -2.7 heavy metal-binding domain-containing protein compare
EX31_RS13875 -1.1 -4.2 major outer membrane lipoprotein compare
EX31_RS20530 -1.1 -5.2 nucleoside-diphosphate kinase compare
EX31_RS00565 -1.1 -3.1 UbiD family decarboxylase compare
EX31_RS02525 -1.1 -4.6 ABC transporter permease compare
EX31_RS10260 -1.1 -1.6 hypothetical protein compare
EX31_RS24880 -1.1 -8.7 carboxy terminal-processing peptidase compare
EX31_RS10035 -1.0 -1.2 cardiolipin synthase compare
EX31_RS25895 -1.0 -1.8 DinI-like family protein compare
EX31_RS11335 -1.0 -1.8 flagellar protein FlhE compare
EX31_RS15405 -1.0 -2.7 nitrogen fixation protein NifQ compare
EX31_RS09125 -1.0 -3.4 ABC transporter substrate-binding protein compare
EX31_RS16655 -1.0 -1.7 hypothetical protein compare
EX31_RS11435 -1.0 -3.4 ATP phosphoribosyltransferase compare
EX31_RS19655 -1.0 -3.3 beta-ketoacyl-ACP synthase I compare
EX31_RS14320 -1.0 -1.7 envelope stress response regulator transcription factor CpxR compare
EX31_RS17285 -1.0 -3.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS19795 -1.0 -1.2 hypothetical protein compare
EX31_RS01090 -0.9 -2.7 metal ABC transporter permease compare
EX31_RS06225 -0.9 -1.5 hypothetical protein compare
EX31_RS01065 -0.9 -3.2 glycine zipper family protein compare
EX31_RS20670 -0.9 -0.9 RNA chaperone/antiterminator CspA compare
EX31_RS03085 -0.9 -3.4 hypothetical protein compare
EX31_RS22145 -0.9 -1.5 phosphatidylglycerophosphatase A compare
EX31_RS25340 -0.9 -3.3 hypothetical protein compare
EX31_RS25125 -0.9 -2.1 thr operon leader peptide compare
EX31_RS06150 -0.9 -7.1 transcriptional regulator AsnC compare
EX31_RS09580 -0.9 -0.9 flagellar motor switch protein FliN compare
EX31_RS07750 -0.9 -6.4 glutamate--cysteine ligase compare
EX31_RS15155 -0.9 -1.3 diaminopimelate epimerase compare
EX31_RS02160 -0.9 -2.6 helix-turn-helix domain-containing protein compare
EX31_RS03900 -0.9 -2.9 molecular chaperone DnaK compare
EX31_RS04390 -0.9 -2.0 DNA polymerase III subunit chi compare
EX31_RS03210 -0.9 -3.3 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
EX31_RS23125 -0.9 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS21805 -0.8 -1.3 anti-sigma-E factor RseA compare
EX31_RS10590 -0.8 -1.4 cell division topological specificity factor MinE compare
EX31_RS00305 -0.8 -3.2 NAD(P)H-binding protein compare
EX31_RS25555 -0.8 -1.2 GpE family phage tail protein compare
EX31_RS06140 -0.8 -5.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS01075 -0.8 -3.6 manganese-binding transcriptional regulator MntR compare
EX31_RS01305 -0.8 -2.3 trehalose-phosphatase compare
EX31_RS25720 -0.8 -1.8 hypothetical protein compare
EX31_RS06615 -0.8 -3.2 electron transport complex subunit RsxB compare
EX31_RS00510 -0.8 -1.8 TetR/AcrR family transcriptional regulator compare
EX31_RS17250 -0.8 -2.2 DUF1493 family protein compare
EX31_RS06605 -0.8 -3.7 electron transport complex subunit RsxD compare
EX31_RS00905 -0.8 -2.2 ester cyclase compare
EX31_RS03770 -0.8 -4.8 peptidylprolyl isomerase SurA compare
EX31_RS19405 -0.8 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS10530 -0.8 -1.8 anti-adapter protein IraP compare
EX31_RS11690 -0.8 -1.7 dihydroneopterin triphosphate diphosphatase compare
EX31_RS00960 -0.8 -1.9 hypothetical protein compare
EX31_RS09495 -0.8 -1.2 DUF4186 domain-containing protein compare
EX31_RS13745 -0.8 -1.6 pyridoxal kinase PdxY compare
EX31_RS00760 -0.8 -1.9 glutathione S-transferase compare
EX31_RS02360 -0.8 -1.7 CsbD family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Serine across organisms