Experiment set1IT053 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06725 +1.1 8.3 hypothetical protein compare
MMP_RS09025 +0.8 2.2 hypothetical protein compare
MMP_RS00655 +0.7 3.2 hypothetical protein compare
MMP_RS08275 +0.7 5.6 hypothetical protein compare
MMP_RS06325 +0.6 3.6 hypothetical protein compare
MMP_RS07645 +0.6 2.9 aldehyde dehydrogenase family protein compare
MMP_RS02605 +0.6 1.1 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS01650 +0.5 1.1 sulfurtransferase TusA family protein compare
MMP_RS00395 +0.5 1.8 MGMT family protein compare
MMP_RS02595 +0.5 1.4 putative zinc-binding protein compare
MMP_RS04055 +0.5 1.5 hypothetical protein compare
MMP_RS08310 +0.5 2.0 TMEM165/GDT1 family protein compare
MMP_RS06335 +0.5 2.5 HAD family hydrolase compare
MMP_RS02310 +0.4 1.6 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08775 +0.4 3.0 methanogenesis marker 9 domain-containing protein compare
MMP_RS08640 +0.4 3.4 TIM barrel protein compare
MMP_RS07125 +0.4 2.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS01675 +0.4 1.5 hypothetical protein compare
MMP_RS08350 +0.4 0.9 hypothetical protein compare
MMP_RS07345 +0.4 2.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS06930 +0.4 2.8 MBL fold metallo-hydrolase compare
MMP_RS08480 +0.4 3.1 molybdate ABC transporter substrate-binding protein compare
MMP_RS08500 +0.4 2.6 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS09050 +0.4 2.4 CAP domain-containing protein compare
MMP_RS00825 +0.4 1.7 fumarylacetoacetate hydrolase family protein compare
MMP_RS07895 +0.4 2.1 cytochrome c compare
MMP_RS03420 +0.4 1.8 acetolactate synthase small subunit compare
MMP_RS07765 +0.4 2.9 sodium:alanine symporter family protein compare
MMP_RS08930 +0.4 1.1 hypothetical protein compare
MMP_RS07120 +0.4 2.7 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS00735 +0.4 1.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06395 +0.4 1.5 ThiF family adenylyltransferase compare
MMP_RS00945 +0.4 1.0 PadR family transcriptional regulator compare
MMP_RS06590 +0.4 1.9 GNAT family N-acetyltransferase compare
MMP_RS01420 +0.4 1.4 hypothetical protein compare
MMP_RS08105 +0.4 2.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS08850 +0.3 3.3 hypothetical protein compare
MMP_RS03340 +0.3 0.5 ABC transporter ATP-binding protein compare
MMP_RS06555 +0.3 2.0 cupin domain-containing protein compare
MMP_RS07890 +0.3 1.6 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS06530 +0.3 1.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS06910 +0.3 2.3 RlmF-related methyltransferase compare
MMP_RS02475 +0.3 1.3 hypothetical protein compare
MMP_RS00740 +0.3 1.7 cyclase family protein compare
MMP_RS00290 +0.3 2.6 hypothetical protein compare
MMP_RS07130 +0.3 2.5 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS06015 +0.3 1.9 flavodoxin family protein compare
MMP_RS08845 +0.3 2.5 archaellum operon transcriptional activator EarA family protein compare
MMP_RS08580 +0.3 1.3 flagellin compare
MMP_RS00450 +0.3 1.1 4Fe-4S binding protein compare
MMP_RS07775 +0.3 2.1 alanine dehydrogenase compare
MMP_RS04265 +0.3 1.9 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07650 +0.3 2.4 TldD/PmbA family protein compare
MMP_RS00670 +0.3 1.5 TIM barrel protein compare
MMP_RS01630 +0.3 2.6 N-glycosylase/DNA lyase compare
MMP_RS02905 +0.3 2.0 2-thiouracil desulfurase family protein compare
MMP_RS06585 +0.3 0.9 DMT family protein compare
MMP_RS01150 +0.3 1.8 aldo/keto reductase compare
MMP_RS05355 +0.3 0.5 hypothetical protein compare
MMP_RS08360 +0.3 1.8 hypothetical protein compare
MMP_RS00660 +0.3 2.4 alkaline phosphatase family protein compare
MMP_RS01785 +0.3 1.8 hypothetical protein compare
MMP_RS08095 +0.3 1.8 dethiobiotin synthase compare
MMP_RS00280 +0.3 2.2 DUF2118 domain-containing protein compare
MMP_RS08610 +0.3 2.4 flagellar protein F compare
MMP_RS01055 +0.3 1.4 hypothetical protein compare
MMP_RS07115 +0.3 2.0 MBL fold metallo-hydrolase compare
MMP_RS06710 +0.3 2.0 selenium-binding protein compare
MMP_RS03910 +0.3 1.3 hypothetical protein compare
MMP_RS06760 +0.3 1.6 hypothetical protein compare
MMP_RS06735 +0.3 1.8 class I SAM-dependent rRNA methyltransferase compare
MMP_RS00390 +0.3 2.3 ammonium transporter compare
MMP_RS02985 +0.3 1.4 hypothetical protein compare
MMP_RS03675 +0.3 2.2 RimK family alpha-L-glutamate ligase compare
MMP_RS01865 +0.3 0.8 GPR1/FUN34/YaaH family transporter compare
MMP_RS08760 +0.3 1.1 hypothetical protein compare
MMP_RS02725 +0.2 1.8 molybdate ABC transporter permease subunit compare
MMP_RS06965 +0.2 1.7 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS08555 +0.2 1.2 hypothetical protein compare
MMP_RS03520 +0.2 1.1 YwbE family protein compare
MMP_RS08470 +0.2 1.7 ATP-binding cassette domain-containing protein compare
MMP_RS06545 +0.2 1.5 ferredoxin family protein compare
MMP_RS08265 +0.2 1.6 rubrerythrin compare
MMP_RS07715 +0.2 1.9 YfcE family phosphodiesterase compare
MMP_RS03450 +0.2 1.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS02360 +0.2 1.9 hypothetical protein compare
MMP_RS00125 +0.2 0.7 DUF2798 domain-containing protein compare
MMP_RS09060 +0.2 1.9 hypothetical protein compare
MMP_RS01655 +0.2 1.2 DsrE family protein compare
MMP_RS08700 +0.2 1.3 hypothetical protein compare
MMP_RS08665 +0.2 2.1 hypothetical protein compare
MMP_RS06140 +0.2 1.5 radical SAM protein compare
MMP_RS05990 +0.2 1.2 DsrE family protein compare
MMP_RS05275 +0.2 1.6 AI-2E family transporter compare
MMP_RS07680 +0.2 1.6 DUF366 family protein compare
MMP_RS07640 +0.2 1.4 mechanosensitive ion channel family protein compare
MMP_RS05090 +0.2 1.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04790 +0.2 1.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08755 +0.2 1.8 sodium:solute symporter family protein compare
MMP_RS02675 +0.2 0.9 hypothetical protein compare
MMP_RS08325 +0.2 1.9 hypothetical protein compare
MMP_RS07595 +0.2 1.8 hypothetical protein compare
MMP_RS03800 +0.2 1.0 hypothetical protein compare
MMP_RS07155 +0.2 1.5 MFS transporter compare
MMP_RS08750 +0.2 1.3 hypothetical protein compare
MMP_RS06520 +0.2 0.9 DUF1786 domain-containing protein compare
MMP_RS01430 +0.2 1.3 mechanosensitive ion channel family protein compare
MMP_RS05365 +0.2 0.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS02815 +0.2 1.0 hypothetical protein compare
MMP_RS03740 +0.2 1.1 indolepyruvate oxidoreductase subunit beta compare
MMP_RS02455 +0.2 1.5 hypothetical protein compare
MMP_RS08980 +0.2 1.0 hypothetical protein compare
MMP_RS05695 +0.2 1.3 phospholipase D-like domain-containing protein compare
MMP_RS00640 +0.2 1.4 ABC transporter substrate-binding protein compare
MMP_RS06490 +0.2 0.9 hypothetical protein compare
MMP_RS02825 +0.2 1.5 mechanosensitive ion channel family protein compare
MMP_RS07835 +0.2 1.0 TldD/PmbA family protein compare
MMP_RS05455 +0.2 1.5 DUF167 domain-containing protein compare
MMP_RS07570 +0.2 1.4 nucleotidyltransferase family protein compare
MMP_RS01775 +0.2 0.4 TIGR00297 family protein compare
MMP_RS07805 +0.2 1.4 ABC transporter permease compare
MMP_RS04610 +0.2 0.9 Dabb family protein compare
MMP_RS00100 +0.2 1.5 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00285 +0.2 1.2 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07550 +0.2 1.5 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS01980 +0.2 1.6 trimeric intracellular cation channel family protein compare
MMP_RS07135 +0.2 1.3 coenzyme F420 hydrogenase subunit beta compare
MMP_RS01440 +0.2 1.5 NAAT family transporter compare
MMP_RS03550 +0.2 0.6 DUF2124 domain-containing protein compare
MMP_RS07915 +0.2 0.9 DUF4870 domain-containing protein compare
MMP_RS08940 +0.2 0.5 MetS family NSS transporter small subunit compare
MMP_RS00435 +0.2 1.5 CPBP family intramembrane metalloprotease compare
MMP_RS07985 +0.2 1.5 nitroreductase family protein compare
MMP_RS00185 +0.2 1.5 potassium channel protein compare
MMP_RS03895 +0.2 0.9 hypothetical protein compare
MMP_RS02500 +0.2 1.2 minichromosome maintenance protein MCM compare
MMP_RS06970 +0.2 1.2 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS08405 +0.2 1.4 MFS transporter compare
MMP_RS08130 +0.2 1.5 IGHMBP2 family helicase compare
MMP_RS03215 +0.2 1.3 MBL fold metallo-hydrolase compare
MMP_RS08415 +0.2 0.6 radical SAM protein compare
MMP_RS02685 +0.2 1.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS00630 +0.2 1.2 ECF transporter S component compare
MMP_RS06090 +0.2 1.1 iron ABC transporter permease compare
MMP_RS02020 +0.2 1.3 gamma-glutamylcyclotransferase compare
MMP_RS08390 +0.2 1.3 DUF5400 domain-containing protein compare
MMP_RS02550 +0.2 0.8 helix-turn-helix transcriptional regulator compare
MMP_RS06435 +0.2 1.4 CBS domain-containing protein compare
MMP_RS04145 +0.2 0.6 hypothetical protein compare
MMP_RS04520 +0.2 0.7 nucleoside deaminase compare
MMP_RS08230 +0.2 1.3 50S ribosomal protein L11 methyltransferase compare
MMP_RS00625 +0.2 1.1 hypothetical protein compare
MMP_RS06875 +0.2 1.1 FAD-dependent oxidoreductase compare
MMP_RS02845 +0.2 1.4 hypothetical protein compare
MMP_RS01115 +0.2 1.1 molybdopterin molybdotransferase MoeA compare
MMP_RS05235 +0.2 1.3 exodeoxyribonuclease III compare
MMP_RS00855 +0.2 1.1 DUF367 family protein compare
MMP_RS03395 +0.2 0.7 hypothetical protein compare
MMP_RS09065 +0.2 1.3 hypothetical protein compare
MMP_RS08225 +0.2 1.1 RimK family alpha-L-glutamate ligase compare
MMP_RS03440 +0.2 0.4 MoaD/ThiS family protein compare
MMP_RS02170 +0.2 0.9 CBS domain-containing protein compare
MMP_RS02740 +0.2 1.0 hypothetical protein compare
MMP_RS08835 +0.2 1.1 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS00400 +0.2 1.0 tributyrin esterase compare
MMP_RS00955 +0.2 1.2 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS00800 +0.1 1.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07195 +0.1 1.3 M20 family metallo-hydrolase compare
MMP_RS08410 +0.1 1.2 DUF169 domain-containing protein compare
MMP_RS00130 +0.1 0.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS01690 +0.1 1.1 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08630 +0.1 1.0 archaellar assembly protein FlaJ compare
MMP_RS07355 +0.1 0.3 transcription factor S compare
MMP_RS00445 +0.1 1.1 7-carboxy-7-deazaguanine synthase QueE compare
MMP_RS07100 +0.1 1.2 hypothetical protein compare
MMP_RS07590 +0.1 1.1 hypothetical protein compare
MMP_RS08215 +0.1 0.9 DUF483 domain-containing protein compare
MMP_RS00690 +0.1 1.2 MBL fold metallo-hydrolase compare
MMP_RS04740 +0.1 1.0 DUF473 domain-containing protein compare
MMP_RS00080 +0.1 1.0 RecB-family nuclease compare
MMP_RS06080 +0.1 1.2 radical SAM protein compare
MMP_RS05900 +0.1 0.8 tetratricopeptide repeat protein compare
MMP_RS06560 +0.1 1.0 hypothetical protein compare
MMP_RS03670 +0.1 0.5 DUF1890 domain-containing protein compare
MMP_RS08385 +0.1 0.9 ABC transporter substrate-binding protein compare
MMP_RS01685 +0.1 0.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01450 +0.1 1.0 tRNA pseudouridine(38-40) synthase TruA compare
MMP_RS00055 +0.1 1.2 DUF2254 domain-containing protein compare
MMP_RS05715 +0.1 1.0 hypothetical protein compare
MMP_RS06375 +0.1 0.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01130 +0.1 1.1 flavoprotein compare
MMP_RS07145 +0.1 0.9 AmmeMemoRadiSam system protein B compare
MMP_RS01125 +0.1 0.9 thioredoxin family protein compare
MMP_RS02680 +0.1 0.9 ABC transporter permease compare
MMP_RS01070 +0.1 1.2 hypothetical protein compare
MMP_RS04205 +0.1 0.9 carboxymuconolactone decarboxylase family protein compare
MMP_RS08160 +0.1 0.9 EamA family transporter compare
MMP_RS08380 +0.1 0.8 phosphatase PAP2 family protein compare
MMP_RS01145 +0.1 1.1 ABC transporter ATP-binding protein compare
MMP_RS08490 +0.1 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanol across organisms