Experiment set1IT052 for Acidovorax sp. GW101-3H11

Compare to:

LB with copper (II) chloride dihydrate 1 mM

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_4378 +2.8 26.6 Cellulose synthase operon protein C compare
Ac3H11_4376 +2.8 25.2 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) compare
Ac3H11_4377 +2.7 22.4 Cyclic di-GMP binding protein precursor compare
Ac3H11_4375 +2.6 22.7 Cellulose synthase, putative compare
Ac3H11_4373 +2.4 6.5 conserved hypothetical protein compare
Ac3H11_1421 +1.6 15.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Ac3H11_1667 +1.5 14.1 Cellulose synthase operon protein C compare
Ac3H11_1666 +1.5 10.6 Endoglucanase precursor (EC 3.2.1.4) compare
Ac3H11_1672 +1.5 13.1 FIG002337: predicted inner membrane protein compare
Ac3H11_1671 +1.5 13.5 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) compare
Ac3H11_44 +1.4 9.9 TPR repeat precursor compare
Ac3H11_1665 +1.3 11.4 Cyclic di-GMP binding protein precursor compare
Ac3H11_1453 +1.3 2.7 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_978 +1.2 2.8 hypothetical protein compare
Ac3H11_1422 +1.2 7.8 Positive regulator of CheA protein activity (CheW) compare
Ac3H11_733 +1.2 7.2 serine/threonine protein kinase compare
Ac3H11_1797 +1.2 2.6 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
Ac3H11_1670 +1.2 5.7 Cellulose synthase, putative compare
Ac3H11_1559 +1.2 8.7 Response regulator compare
Ac3H11_1668 +1.2 6.7 FIG005274: hypothetical protein compare
Ac3H11_4060 +1.2 9.7 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_1423 +1.2 8.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Ac3H11_3590 +1.1 1.8 Carbon monoxide dehydrogenase small chain (EC 1.2.99.2) compare
Ac3H11_3687 +1.1 1.0 Urease accessory protein UreE compare
Ac3H11_4058 +1.1 7.5 required for efflux of an amino acid polymer (from data) compare
Ac3H11_162 +1.1 1.6 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_45 +1.1 7.8 hypothetical protein compare
Ac3H11_1208 +1.1 9.3 FIG005080: Possible exported protein compare
Ac3H11_3365 +1.1 8.6 Glycosyl transferase, group 1 compare
Ac3H11_3060 +1.1 2.0 hypothetical protein compare
Ac3H11_2604 +1.1 1.2 Granule-associated protein compare
Ac3H11_3004 +1.1 1.8 UPF0225 protein YchJ compare
Ac3H11_4150 +1.1 4.1 diguanylate cyclase compare
Ac3H11_4637 +1.0 4.1 hypothetical protein compare
Ac3H11_4061 +1.0 8.9 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_3525 +1.0 1.6 hypothetical protein compare
Ac3H11_4774 +1.0 8.8 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ac3H11_4059 +1.0 9.4 Lipid A export ATP-binding/permease protein MsbA compare
Ac3H11_1424 +1.0 8.6 Chemotaxis protein CheD compare
Ac3H11_3669 +1.0 8.8 Protein phosphatase 2C-like compare
Ac3H11_1792 +1.0 6.2 Type IV pilus biogenesis protein PilF compare
Ac3H11_3266 +1.0 1.9 3-demethylubiquinone-9 3-methyltransferase compare
Ac3H11_4430 +1.0 5.3 FIG01198927: hypothetical protein compare
Ac3H11_2876 +0.9 3.0 hypothetical protein compare
Ac3H11_3169 +0.9 1.4 hypothetical protein compare
Ac3H11_1027 +0.9 1.3 FIG01198047: hypothetical protein compare
Ac3H11_249 +0.9 1.3 hypothetical protein compare
Ac3H11_3218 +0.9 1.6 Response regulator NasT compare
Ac3H11_3571 +0.9 1.7 ABC-type tungstate transport system, permease protein compare
Ac3H11_4164 +0.9 6.2 GGDEF family protein compare
Ac3H11_2789 +0.8 1.1 hypothetical protein compare
Ac3H11_3288 +0.8 2.4 Basic proline-rich protein precursor compare
Ac3H11_3052 +0.8 2.1 FIG00761799: membrane protein compare
Ac3H11_2860 +0.8 5.3 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W compare
Ac3H11_225 +0.8 2.0 Cobalt-zinc-cadmium resistance protein czcI precursor compare
Ac3H11_1791 +0.8 1.9 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) compare
Ac3H11_339 +0.8 3.3 Transcriptional regulator, PadR family compare
Ac3H11_901 +0.8 1.8 Beta-lactamase (EC 3.5.2.6) compare
Ac3H11_657 +0.8 2.6 Sensory histidine kinase QseC compare
Ac3H11_4633 +0.8 2.5 putative outer membrane autotransporter barrel compare
Ac3H11_723 +0.8 3.9 Cell division protein FtsN compare
Ac3H11_4207 +0.8 3.4 Flagellar hook-basal body complex protein FliE compare
Ac3H11_708 +0.8 5.7 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
Ac3H11_3417 +0.8 1.0 hypothetical protein compare
Ac3H11_2804 +0.7 1.3 IncF plasmid conjugative transfer pilus assembly protein TraE compare
Ac3H11_2322 +0.7 6.7 2-methylcitrate synthase (EC 2.3.3.5) compare
Ac3H11_4632 +0.7 4.4 General secretion pathway protein A compare
Ac3H11_2033 +0.7 2.5 General secretion pathway protein L compare
Ac3H11_2667 +0.7 2.0 hypothetical protein compare
Ac3H11_524 +0.7 5.3 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like compare
Ac3H11_888 +0.7 1.4 hypothetical protein compare
Ac3H11_1728 +0.7 2.4 hypothetical protein compare
Ac3H11_3987 +0.7 6.2 type IV pili signal transduction protein PilI compare
Ac3H11_907 +0.7 1.9 hypothetical protein compare
Ac3H11_2678 +0.7 1.1 hypothetical protein compare
Ac3H11_546 +0.7 4.8 ABC transporter ATP-binding protein compare
Ac3H11_949 +0.7 1.9 hypothetical protein compare
Ac3H11_926 +0.7 2.0 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_1205 +0.7 1.6 Two-component response regulator compare
Ac3H11_1080 +0.7 1.2 hypothetical protein compare
Ac3H11_3988 +0.7 5.5 twitching motility protein PilH compare
Ac3H11_934 +0.7 3.6 Cell division trigger factor (EC 5.2.1.8) compare
Ac3H11_2160 +0.7 0.9 sensory box histidine kinase/response regulator compare
Ac3H11_2766 +0.7 1.6 hypothetical protein compare
Ac3H11_3117 +0.7 3.1 ortholog of Bordetella pertussis (BX470248) BP3300 compare
Ac3H11_4656 +0.7 2.4 hypothetical protein compare
Ac3H11_4707 +0.7 2.4 FIG00537720: hypothetical protein compare
Ac3H11_1661 +0.7 2.4 hypothetical protein compare
Ac3H11_3606 +0.7 2.1 Mlr1171 protein compare
Ac3H11_4246 +0.7 1.9 hypothetical protein compare
Ac3H11_1660 +0.7 1.2 ATP-dependent DNA helicase UvrD/PcrA compare
Ac3H11_96 +0.6 1.1 hypothetical protein compare
Ac3H11_2660 +0.6 1.5 hypothetical protein compare
Ac3H11_5012 +0.6 0.7 ribonuclease H compare
Ac3H11_2990 +0.6 2.6 Phenylacetic acid degradation protein PaaD, thioesterase compare
Ac3H11_2796 +0.6 2.1 hypothetical protein compare
Ac3H11_2301 +0.6 2.8 hypothetical protein compare
Ac3H11_446 +0.6 4.8 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Ac3H11_2438 +0.6 1.3 hypothetical protein compare
Ac3H11_483 +0.6 1.1 Thioredoxin compare
Ac3H11_3765 +0.6 1.5 Transcriptional regulator, IclR family compare
Ac3H11_123 +0.6 1.4 hypothetical protein compare
Ac3H11_3985 +0.6 5.4 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Ac3H11_2838 +0.6 3.9 L-lactate dehydrogenase (EC 1.1.2.3) compare
Ac3H11_4980 +0.6 1.5 Cu(I)-responsive transcriptional regulator compare
Ac3H11_2198 +0.6 0.8 hypothetical protein compare
Ac3H11_1174 +0.6 0.9 Transcriptional regulator, GntR family compare
Ac3H11_1152 +0.6 1.5 hypothetical protein compare
Ac3H11_281 +0.6 2.4 FIG00932369: hypothetical protein compare
Ac3H11_1498 +0.6 2.2 Short-chain dehydrogenase/reductase SDR compare
Ac3H11_2812 +0.6 1.1 hypothetical protein compare
Ac3H11_1803 +0.6 0.9 Putative inner membrane protein YjeT (clustered with HflC) compare
Ac3H11_3517 +0.6 0.9 Transcriptional regulator, LysR family compare
Ac3H11_831 +0.6 2.1 Cytochrome C553 (soluble cytochrome f) compare
Ac3H11_3420 +0.6 1.2 Glyoxalase family protein compare
Ac3H11_2061 +0.6 3.9 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Ac3H11_3066 +0.6 0.9 hypothetical protein compare
Ac3H11_4390 +0.6 3.4 integral membrane sensor signal transduction histidine kinase compare
Ac3H11_1292 +0.6 2.2 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Ac3H11_2657 +0.6 1.0 FIG00576391: hypothetical protein compare
Ac3H11_3692 +0.6 1.2 HupE-UreJ family metal transporter compare
Ac3H11_2837 +0.6 3.9 Iron-uptake factor PiuC compare
Ac3H11_4220 +0.6 2.1 hypothetical protein compare
Ac3H11_3981 +0.5 2.1 UPF0301 protein YqgE compare
Ac3H11_2519 +0.5 1.8 hypothetical protein compare
Ac3H11_2181 +0.5 1.3 Alkylated DNA repair protein AlkB compare
Ac3H11_963 +0.5 2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_1339 +0.5 1.0 Mobile element protein compare
Ac3H11_1639 +0.5 4.1 Probable two-component response regulator compare
Ac3H11_1000 +0.5 0.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ac3H11_2263 +0.5 2.2 Probable transmembrane protein compare
Ac3H11_3008 +0.5 4.4 Transcriptional regulator, AraC family compare
Ac3H11_4878 +0.5 1.9 hypothetical protein compare
Ac3H11_3827 +0.5 2.0 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
Ac3H11_4607 +0.5 0.9 FIG00643033: hypothetical protein compare
Ac3H11_4818 +0.5 2.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Ac3H11_108 +0.5 1.3 Hydrolase compare
Ac3H11_4097 +0.5 4.3 Oligopeptidase A (EC 3.4.24.70) compare
Ac3H11_218 +0.5 1.8 hypothetical protein compare
Ac3H11_3662 +0.5 0.8 hypothetical protein compare
Ac3H11_3223 +0.5 2.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Ac3H11_43 +0.5 4.1 ErfK/YbiS/YcfS/YnhG family protein compare
Ac3H11_282 +0.5 4.0 FIG074102: hypothetical protein compare
Ac3H11_3179 +0.5 2.0 Chromosome initiation inhibitor compare
Ac3H11_4081 +0.5 1.3 bll5262; hypothetical protein compare
Ac3H11_3740 +0.5 1.6 Gluconate permease compare
Ac3H11_3644 +0.5 3.8 Pole remodelling regulatory diguanylate cyclase compare
Ac3H11_2702 +0.5 1.7 hypothetical protein compare
Ac3H11_1904 +0.5 0.7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) compare
Ac3H11_4370 +0.5 1.4 FIG00786362: hypothetical protein compare
Ac3H11_2815 +0.5 1.5 IncF plasmid conjugative transfer protein TrbC compare
Ac3H11_1551 +0.5 4.7 Glutamine synthetase type I (EC 6.3.1.2) compare
Ac3H11_283 +0.5 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Ac3H11_734 +0.5 3.0 Ferredoxin-dependent glutamate synthase (EC 1.4.7.1) compare
Ac3H11_3955 +0.5 2.3 TRAP-type C4-dicarboxylate transport system, large permease component compare
Ac3H11_1539 +0.5 4.5 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Ac3H11_4897 +0.5 2.1 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Ac3H11_4533 +0.5 2.1 hypothetical protein compare
Ac3H11_87 +0.5 1.0 hypothetical protein compare
Ac3H11_1167 +0.5 3.2 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_457 +0.5 1.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Ac3H11_2185 +0.5 1.2 hypothetical secreted protein compare
Ac3H11_3986 +0.5 3.3 twitching motility protein PilJ compare
Ac3H11_3125 +0.5 2.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Ac3H11_1112 +0.5 3.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Ac3H11_3214 +0.5 1.8 Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-) compare
Ac3H11_3787 +0.5 3.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Ac3H11_5011 +0.5 1.9 Gfa-like protein compare
Ac3H11_3205 +0.5 1.7 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
Ac3H11_1552 +0.5 4.3 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Ac3H11_3029 +0.5 0.9 Ferredoxin compare
Ac3H11_791 +0.5 2.9 ABC transporter for Glycerol, ATPase component 1 (from data) compare
Ac3H11_3345 +0.5 2.3 hypothetical protein compare
Ac3H11_865 +0.5 1.2 hypothetical protein compare
Ac3H11_2934 +0.5 1.4 D-2-hydroxyglutarate dehydrogenase compare
Ac3H11_4593 +0.5 1.9 hypothetical protein compare
Ac3H11_4494 +0.5 1.7 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
Ac3H11_688 +0.5 2.1 Biopolymer transport protein ExbD/TolR compare
Ac3H11_1763 +0.5 3.0 Adenylate cyclase (EC 4.6.1.1) compare
Ac3H11_3131 +0.5 1.8 hypothetical protein compare
Ac3H11_795 +0.5 1.9 FIG00761799: membrane protein compare
Ac3H11_1982 +0.5 1.9 Zn-dependent protease with chaperone function compare
Ac3H11_602 +0.5 2.3 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) compare
Ac3H11_4169 +0.5 2.8 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) compare
Ac3H11_3457 +0.5 3.9 FIG00555615: hypothetical protein compare
Ac3H11_1142 +0.5 1.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Ac3H11_4772 +0.5 3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Ac3H11_1473 +0.5 1.2 hypothetical protein compare
Ac3H11_3455 +0.5 3.2 FOG: TPR repeat compare
Ac3H11_3224 +0.5 1.5 hypothetical protein compare
Ac3H11_1622 +0.4 2.0 RNA polymerase sigma factor compare
Ac3H11_2624 +0.4 2.2 Transcriptional regulator compare
Ac3H11_3496 +0.4 0.6 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) compare
Ac3H11_2991 +0.4 4.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Ac3H11_4664 +0.4 2.4 Cyanate hydratase (EC 4.2.1.104) compare
Ac3H11_3355 +0.4 2.0 hypothetical protein compare
Ac3H11_3409 +0.4 1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_604 +0.4 1.9 L-arabonate dehydratase (EC 4.2.1.25) compare
Ac3H11_1555 +0.4 3.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
Ac3H11_3475 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Acidovorax sp. GW101-3H11 in stress experiments

For stress copper (II) chloride dihydrate across organisms