Experiment set1IT052 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Zinc sulfate heptahydrate 0.2 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23525 +8.4 63.8 hypothetical protein compare
CA265_RS22690 +6.1 33.6 hypothetical protein compare
CA265_RS23505 +5.3 9.9 biopolymer transporter ExbD compare
CA265_RS00490 +5.3 1.8 hypothetical protein compare
CA265_RS21060 +5.1 11.9 hypothetical protein compare
CA265_RS23145 +5.0 15.7 hypothetical protein compare
CA265_RS19940 +5.0 26.8 hypothetical protein compare
CA265_RS19945 +4.6 7.2 hypothetical protein compare
CA265_RS15615 +4.5 15.0 malate dehydrogenase compare
CA265_RS07515 +4.1 22.5 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS16005 +3.9 6.5 hypothetical protein compare
CA265_RS19030 +3.7 17.7 hypothetical protein compare
CA265_RS12745 +3.6 11.2 NUDIX hydrolase compare
CA265_RS04990 +3.5 9.9 short chain dehydrogenase compare
CA265_RS05160 +3.4 27.8 hypothetical protein compare
CA265_RS19740 +3.4 18.5 gliding motility lipoprotein GldD compare
CA265_RS18115 +3.3 21.8 gliding motility protein GldN compare
CA265_RS03260 +3.3 20.7 multidrug ABC transporter ATP-binding protein compare
CA265_RS03290 +3.3 23.2 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS12890 +3.3 21.4 hypothetical protein compare
CA265_RS03295 +3.2 21.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18990 +3.2 27.9 cell surface protein SprA compare
CA265_RS15085 +3.1 16.2 hypothetical protein compare
CA265_RS15200 +3.1 6.4 hypothetical protein compare
CA265_RS23635 +3.1 23.3 gliding motility lipoprotein GldJ compare
CA265_RS20350 +3.1 11.2 gliding motility lipoprotein GldH compare
CA265_RS18130 +3.0 24.0 gliding motility-associated lipoprotein compare
CA265_RS18120 +3.0 24.0 gliding motility protein GldM compare
CA265_RS17455 +3.0 8.0 hypothetical protein compare
CA265_RS23510 +3.0 7.5 energy transducer TonB compare
CA265_RS09435 +2.9 13.8 hypothetical protein compare
CA265_RS23640 +2.9 18.1 hypothetical protein compare
CA265_RS21900 +2.8 21.6 two-component sensor histidine kinase compare
CA265_RS15115 +2.8 12.0 porin compare
CA265_RS24650 +2.8 12.3 beta-phosphoglucomutase compare
CA265_RS18125 +2.8 11.6 gliding motility protein GldL compare
CA265_RS24655 +2.8 15.2 maltose phosphorylase (EC 2.4.1.8) (from data) compare
CA265_RS15070 +2.7 8.8 hypothetical protein compare
CA265_RS14765 +2.7 18.4 alkaline phosphatase family protein compare
CA265_RS18225 +2.7 13.5 DNA-binding response regulator compare
CA265_RS23985 +2.6 12.1 gliding motility lipoprotein GldB compare
CA265_RS08855 +2.6 13.0 MFS transporter compare
CA265_RS17555 +2.5 15.7 hypothetical protein compare
CA265_RS06585 +2.4 9.7 hypothetical protein compare
CA265_RS01975 +2.4 5.7 cell division protein compare
CA265_RS12945 +2.4 13.8 hypothetical protein compare
CA265_RS22800 +2.3 15.5 glycosyl transferase compare
CA265_RS18770 +2.3 5.8 hypothetical protein compare
CA265_RS23840 +2.2 10.6 S1/P1 Nuclease compare
CA265_RS14535 +2.2 5.0 DUF4783 domain-containing protein compare
CA265_RS10470 +2.1 16.4 amidinotransferase compare
CA265_RS10475 +2.1 10.9 amidinotransferase compare
CA265_RS24790 +1.9 9.8 peptidylprolyl isomerase compare
CA265_RS09335 +1.9 7.3 DUF4442 domain-containing protein compare
CA265_RS14750 +1.9 6.9 energy transducer TonB compare
CA265_RS15195 +1.9 5.6 hypothetical protein compare
CA265_RS08445 +1.8 2.0 endonuclease compare
CA265_RS24255 +1.8 3.7 sugar kinase compare
CA265_RS14670 +1.8 9.4 hypothetical protein compare
CA265_RS15895 +1.8 5.9 hypothetical protein compare
CA265_RS18530 +1.8 3.5 aspartate aminotransferase family protein compare
CA265_RS18135 +1.7 3.5 uroporphyrinogen-III synthase compare
CA265_RS14665 +1.7 9.7 hypothetical protein compare
CA265_RS21905 +1.7 8.4 hypothetical protein compare
CA265_RS14825 +1.7 2.5 outer membrane protein assembly factor BamD compare
CA265_RS09650 +1.7 3.2 diaminopimelate decarboxylase compare
CA265_RS09035 +1.7 6.9 anti-anti-sigma factor compare
CA265_RS15230 +1.6 5.9 RNA pseudouridine synthase compare
CA265_RS05165 +1.6 5.6 hypothetical protein compare
CA265_RS00655 +1.6 7.0 RNA polymerase subunit sigma-24 compare
CA265_RS22805 +1.6 9.4 glycosyl transferase compare
CA265_RS02605 +1.6 6.1 hypothetical protein compare
CA265_RS04385 +1.6 3.6 hypothetical protein compare
CA265_RS15640 +1.5 5.9 sugar kinase compare
CA265_RS09455 +1.5 11.2 FUSC family protein compare
CA265_RS08880 +1.5 8.5 chromate transporter compare
CA265_RS14745 +1.5 5.3 biopolymer transporter ExbD compare
CA265_RS00165 +1.5 3.1 hypothetical protein compare
CA265_RS15005 +1.5 9.1 porin compare
CA265_RS15580 +1.5 6.1 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS04980 +1.5 2.7 recombination protein RecR compare
CA265_RS08070 +1.5 1.8 tRNA-Ser compare
CA265_RS17440 +1.5 8.7 Fis family transcriptional regulator compare
CA265_RS15215 +1.4 7.6 two-component sensor histidine kinase compare
CA265_RS00270 +1.4 1.2 hypothetical protein compare
CA265_RS02460 +1.4 2.5 tRNA-Phe compare
CA265_RS16140 +1.4 1.6 hypothetical protein compare
CA265_RS09935 +1.4 3.9 hypothetical protein compare
CA265_RS21290 +1.4 2.7 hypothetical protein compare
CA265_RS00855 +1.3 4.5 hypothetical protein compare
CA265_RS15210 +1.3 4.9 DNA-binding response regulator compare
CA265_RS18090 +1.3 9.5 gliding motility protein compare
CA265_RS06250 +1.3 1.6 RNA polymerase subunit sigma-70 compare
CA265_RS18500 +1.3 6.0 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS20975 +1.3 2.7 hypothetical protein compare
CA265_RS23235 +1.3 3.1 transcriptional regulator compare
CA265_RS02580 +1.3 4.0 hypothetical protein compare
CA265_RS18230 +1.3 4.5 two-component sensor histidine kinase compare
CA265_RS20355 +1.3 1.0 hypothetical protein compare
CA265_RS21865 +1.2 6.3 two-component sensor histidine kinase compare
CA265_RS09010 +1.2 3.4 3-phosphoglycerate dehydrogenase compare
CA265_RS18550 +1.2 1.2 N-acetyltransferase compare
CA265_RS11030 +1.2 1.4 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS20095 +1.2 3.2 NADH oxidase compare
CA265_RS04275 +1.2 2.4 ATP-dependent protease ATP-binding subunit ClpX compare
CA265_RS13695 +1.2 3.8 hypothetical protein compare
CA265_RS23980 +1.2 5.5 patatin compare
CA265_RS14740 +1.2 5.0 biopolymer transporter ExbB compare
CA265_RS21870 +1.2 4.0 DNA-binding response regulator compare
CA265_RS04265 +1.2 2.7 hypothetical protein compare
CA265_RS01200 +1.2 4.0 hypothetical protein compare
CA265_RS17560 +1.2 5.4 peptidylprolyl isomerase compare
CA265_RS18485 +1.2 4.6 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS11025 +1.2 2.4 hypothetical protein compare
CA265_RS23210 +1.1 6.3 hypothetical protein compare
CA265_RS08315 +1.1 1.2 tRNA-Lys compare
CA265_RS10040 +1.1 1.3 hypothetical protein compare
CA265_RS23120 +1.1 1.6 hypothetical protein compare
CA265_RS01195 +1.1 3.1 hypothetical protein compare
CA265_RS08105 +1.1 4.1 DUF983 domain-containing protein compare
CA265_RS06200 +1.1 5.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
CA265_RS23090 +1.1 3.6 transcriptional regulator compare
CA265_RS04650 +1.1 5.5 two-component sensor histidine kinase compare
CA265_RS22315 +1.1 3.3 hypothetical protein compare
CA265_RS05210 +1.1 2.7 tRNA methyltransferase compare
CA265_RS04645 +1.1 5.0 cation transporter compare
CA265_RS12665 +1.1 1.3 cold-shock protein compare
CA265_RS08085 +1.1 6.4 aminodeoxychorismate lyase compare
CA265_RS22750 +1.1 2.4 hypothetical protein compare
CA265_RS21750 +1.1 1.6 hypothetical protein compare
CA265_RS01205 +1.1 3.3 import component protein compare
CA265_RS05460 +1.1 4.9 glycosyl transferase family 2 compare
CA265_RS20375 +1.1 3.1 methyltransferase compare
CA265_RS15250 +1.0 2.9 ABC transporter permease compare
CA265_RS10195 +1.0 3.0 hypothetical protein compare
CA265_RS19560 +1.0 2.0 hypothetical protein compare
CA265_RS03255 +1.0 3.7 glycerophosphodiester phosphodiesterase compare
CA265_RS14950 +1.0 2.3 hypothetical protein compare
CA265_RS25435 +1.0 1.4 hypothetical protein compare
CA265_RS11670 +1.0 4.9 hypothetical protein compare
CA265_RS00940 +1.0 2.8 hypothetical protein compare
CA265_RS15290 +1.0 6.0 hypothetical protein compare
CA265_RS10870 +1.0 3.6 hypothetical protein compare
CA265_RS02045 +1.0 1.3 hypothetical protein compare
CA265_RS19420 +1.0 1.0 hypothetical protein compare
CA265_RS25365 +1.0 2.9 glycerol acyltransferase compare
CA265_RS11100 +1.0 6.9 hypothetical protein compare
CA265_RS25450 +1.0 1.6 iron-sulfur cluster assembly accessory protein compare
CA265_RS22395 +1.0 1.9 VOC family virulence protein compare
CA265_RS02500 +0.9 2.1 hypothetical protein compare
CA265_RS11095 +0.9 2.7 hypothetical protein compare
CA265_RS02555 +0.9 1.5 ATPase compare
CA265_RS04835 +0.9 2.7 dihydrodipicolinate synthetase compare
CA265_RS04560 +0.9 1.2 hypothetical protein compare
CA265_RS13750 +0.9 3.4 hypothetical protein compare
CA265_RS14360 +0.9 2.0 preprotein translocase subunit SecA compare
CA265_RS01560 +0.9 1.8 circadian clock protein KaiB compare
CA265_RS23615 +0.9 5.3 hemolysin compare
CA265_RS21295 +0.9 1.8 hypothetical protein compare
CA265_RS20075 +0.9 1.9 hypothetical protein compare
CA265_RS09810 +0.9 3.9 glucose-6-phosphate dehydrogenase compare
CA265_RS11455 +0.9 3.6 hypothetical protein compare
CA265_RS16325 +0.9 1.0 CsbD family protein compare
CA265_RS03280 +0.9 1.9 hypothetical protein compare
CA265_RS22165 +0.9 0.7 hypothetical protein compare
CA265_RS07565 +0.9 2.7 hypothetical protein compare
CA265_RS18540 +0.9 2.0 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS02840 +0.9 2.4 30S ribosomal protein S30 compare
CA265_RS19410 +0.9 1.9 hypothetical protein compare
CA265_RS19810 +0.9 1.5 hypothetical protein compare
CA265_RS08660 +0.9 1.4 glyoxalase compare
CA265_RS21580 +0.9 1.9 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS11635 +0.9 1.8 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS24955 +0.9 1.7 methyltransferase type 11 compare
CA265_RS22080 +0.9 2.3 hypothetical protein compare
CA265_RS04640 +0.9 2.9 efflux transporter periplasmic adaptor subunit compare
CA265_RS15270 +0.9 2.7 hypothetical protein compare
CA265_RS03450 +0.9 2.5 hypothetical protein compare
CA265_RS21555 +0.9 2.0 hypothetical protein compare
CA265_RS23355 +0.9 2.2 hypothetical protein compare
CA265_RS23665 +0.9 2.7 hypothetical protein compare
CA265_RS06925 +0.9 2.4 hypothetical protein compare
CA265_RS21850 +0.9 3.0 hypothetical protein compare
CA265_RS15720 +0.9 2.1 hypothetical protein compare
CA265_RS05720 +0.8 4.1 hypothetical protein compare
CA265_RS17990 +0.8 2.0 hypothetical protein compare
CA265_RS24025 +0.8 3.0 hypothetical protein compare
CA265_RS19415 +0.8 2.0 DUF4834 domain-containing protein compare
CA265_RS04305 +0.8 1.2 hypothetical protein compare
CA265_RS20180 +0.8 2.0 thiazole synthase compare
CA265_RS00325 +0.8 1.6 hypothetical protein compare
CA265_RS19655 +0.8 1.6 carboxymuconolactone decarboxylase family protein compare
CA265_RS18775 +0.8 2.0 hypothetical protein compare
CA265_RS23520 +0.8 2.7 phosphate ABC transporter substrate-binding protein compare
CA265_RS15245 +0.8 2.6 ABC transporter ATP-binding protein compare
CA265_RS23265 +0.8 2.0 iron-binding protein compare
CA265_RS03270 +0.8 2.8 hypothetical protein compare
CA265_RS21835 +0.8 0.9 hypothetical protein compare
CA265_RS06315 +0.8 3.0 uridine kinase compare
CA265_RS20070 +0.8 2.5 NadR compare


Specific Phenotypes

For 18 genes in this experiment

For stress Zinc sulfate heptahydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress Zinc sulfate heptahydrate across organisms