Experiment set1IT052 for Pedobacter sp. GW460-11-11-14-LB5
R2A with Zinc sulfate heptahydrate 0.2 mM
Group: stressMedia: R2A + Zinc sulfate heptahydrate (0.2 mM)
Culturing: Pedo557_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.4 generations
By: Adam on 17-May-17
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1754 D5
Specific Phenotypes
For 18 genes in this experiment
For stress Zinc sulfate heptahydrate in Pedobacter sp. GW460-11-11-14-LB5
For stress Zinc sulfate heptahydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cobalt-zinc-cadmium resistance | 1 |
| Maltose and Maltodextrin Utilization | 1 |
| NAD regulation | 1 |
| Trehalose Biosynthesis | 1 |
| Trehalose Uptake and Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Folate biosynthesis
- Purine metabolism
- gamma-Hexachlorocyclohexane degradation
- Lipopolysaccharide biosynthesis
- Vitamin B6 metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| maltose degradation | 2 | 2 | 1 |
| diethylphosphate degradation | 2 | 1 | 1 |
| trehalose degradation IV | 3 | 3 | 1 |
| pyridoxal 5'-phosphate salvage II (plants) | 9 | 5 | 3 |
| ginkgotoxin biosynthesis | 3 | 1 | 1 |