Experiment set1IT052 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 5 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS07005 -5.3 -1.1 4Fe-4S binding protein compare
MMP_RS05920 -5.0 -1.0 50S ribosomal protein L37e compare
MMP_RS06700 -4.7 -9.5 hypothetical protein compare
MMP_RS02280 -3.3 -1.5 DUF211 domain-containing protein compare
MMP_RS01175 -3.2 -6.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS00515 -3.0 -1.9 DUF655 domain-containing protein compare
MMP_RS01545 -2.8 -1.7 CBS domain-containing protein compare
MMP_RS08720 -2.8 -2.0 4Fe-4S binding protein compare
MMP_RS01985 -2.7 -10.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07845 -2.6 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS06295 -2.6 -5.3 methanogenesis marker 14 protein compare
MMP_RS08745 -2.5 -6.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08715 -2.5 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06885 -2.5 -2.6 50S ribosome-binding GTPase compare
MMP_RS01610 -2.4 -4.2 hypothetical protein compare
MMP_RS06355 -2.4 -4.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00305 -2.4 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS02900 -2.4 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01265 -2.4 -3.9 hypothetical protein compare
MMP_RS02135 -2.3 -3.5 DUF5612 domain-containing protein compare
MMP_RS01225 -2.2 -5.0 DUF5379 domain-containing protein compare
MMP_RS01220 -2.2 -7.5 hypothetical protein compare
MMP_RS06925 -2.2 -2.5 ribonuclease VapC4 compare
MMP_RS02195 -2.2 -4.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07635 -2.1 -7.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03640 -2.1 -3.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07580 -2.1 -3.8 DUF356 domain-containing protein compare
MMP_RS04585 -2.0 -8.0 AIR synthase related protein compare
MMP_RS01960 -2.0 -1.5 hypothetical protein compare
MMP_RS03025 -2.0 -4.8 molybdenum cofactor guanylyltransferase compare
MMP_RS03315 -2.0 -1.8 ferrous iron transport protein A compare
MMP_RS05430 -2.0 -4.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS00300 -2.0 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08435 -1.9 -2.5 Era-like GTP-binding protein compare
MMP_RS07525 -1.9 -6.4 4Fe-4S binding protein compare
MMP_RS07605 -1.9 -4.4 diadenylate cyclase compare
MMP_RS07390 -1.8 -2.1 cell division protein FtsZ compare
MMP_RS05515 -1.8 -9.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01500 -1.8 -2.6 CBS domain-containing protein compare
MMP_RS08165 -1.8 -1.4 phosphoglycerate dehydrogenase compare
MMP_RS07600 -1.8 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03445 -1.8 -1.5 methanogenesis marker 17 protein compare
MMP_RS03015 -1.8 -8.4 GTP 3' 8-cyclase MoaA compare
MMP_RS00685 -1.8 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07545 -1.8 -1.3 HTH domain-containing protein compare
MMP_RS07730 -1.8 -2.7 pyruvate synthase subunit beta compare
MMP_RS06630 -1.8 -1.5 UPF0058 family protein compare
MMP_RS07445 -1.7 -6.7 helix-turn-helix domain-containing protein compare
MMP_RS06270 -1.7 -3.7 TIGR00300 family protein compare
MMP_RS06350 -1.7 -4.0 HesA/MoeB/ThiF family protein compare
MMP_RS00695 -1.7 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00335 -1.7 -4.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05250 -1.7 -1.5 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07750 -1.6 -5.5 DUF357 domain-containing protein compare
MMP_RS08790 -1.6 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS05540 -1.5 -3.1 hypothetical protein compare
MMP_RS06685 -1.5 -7.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08650 -1.5 -3.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01180 -1.5 -3.0 XTP/dITP diphosphatase compare
MMP_RS02800 -1.5 -5.9 nucleotidyltransferase domain-containing protein compare
MMP_RS03035 -1.5 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07075 -1.5 -3.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS07385 -1.5 -1.3 protein translocase SEC61 complex subunit gamma compare
MMP_RS06730 -1.5 -1.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS05845 -1.5 -1.5 tRNA-intron lyase compare
MMP_RS06625 -1.5 -2.7 DNA primase compare
MMP_RS03400 -1.4 -2.6 archease compare
MMP_RS00985 -1.4 -4.4 CDC48 family AAA ATPase compare
MMP_RS06680 -1.4 -9.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06475 -1.4 -3.5 FAD-dependent oxidoreductase compare
MMP_RS08460 -1.4 -2.0 proteasome-activating nucleotidase compare
MMP_RS03155 -1.4 -4.9 precorrin-6A reductase compare
MMP_RS04685 -1.4 -2.2 DUF126 domain-containing protein compare
MMP_RS07435 -1.4 -1.4 GMP synthase subunit A compare
MMP_RS01755 -1.4 -1.7 DUF2097 domain-containing protein compare
MMP_RS04775 -1.4 -2.7 adenosylhomocysteinase compare
MMP_RS02145 -1.3 -6.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS06105 -1.3 -6.1 hydrogenase maturation peptidase HycI compare
MMP_RS05345 -1.3 -3.5 hypothetical protein compare
MMP_RS06895 -1.3 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS06285 -1.3 -1.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03305 -1.3 -5.2 winged helix-turn-helix domain-containing protein compare
MMP_RS02130 -1.3 -3.6 zinc metalloprotease HtpX compare
MMP_RS00810 -1.3 -5.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02165 -1.3 -5.2 tRNA-dihydrouridine synthase compare
MMP_RS01955 -1.3 -2.6 hypothetical protein compare
MMP_RS02010 -1.3 -5.8 PHP domain-containing protein compare
MMP_RS01830 -1.2 -1.1 tRNA-Val compare
MMP_RS08320 -1.2 -4.6 molybdopterin molybdotransferase MoeA compare
MMP_RS02240 -1.2 -2.3 methanogenesis marker 7 protein compare
MMP_RS06215 -1.2 -2.6 30S ribosomal protein S6e compare
MMP_RS06120 -1.2 -1.4 UPF0147 family protein compare
MMP_RS06130 -1.2 -3.0 peptidylprolyl isomerase compare
MMP_RS01325 -1.2 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS03435 -1.2 -1.0 ketol-acid reductoisomerase compare
MMP_RS08605 -1.2 -3.2 flagellar protein E compare
MMP_RS04780 -1.1 -2.1 ribonuclease P compare
MMP_RS06400 -1.1 -1.3 4Fe-4S binding protein compare
MMP_RS04890 -1.1 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05835 -1.1 -0.9 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS01380 -1.1 -3.3 PHP domain-containing protein compare
MMP_RS03095 -1.1 -4.2 diphthine synthase compare
MMP_RS00620 -1.1 -4.8 4Fe-4S binding protein compare
MMP_RS06345 -1.1 -5.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06865 -1.1 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06715 -1.1 -7.7 cache domain-containing protein compare
MMP_RS08300 -1.1 -0.9 metal-sulfur cluster assembly factor compare
MMP_RS08210 -1.1 -2.7 phosphatidylglycerophosphatase A compare
MMP_RS01900 -1.1 -7.7 hypothetical protein compare
MMP_RS00110 -1.0 -2.8 hypothetical protein compare
MMP_RS02355 -1.0 -2.8 30S ribosomal protein S27ae compare
MMP_RS06670 -1.0 -3.6 glucose-6-phosphate isomerase compare
MMP_RS07685 -1.0 -4.6 TIGR01212 family radical SAM protein compare
MMP_RS08840 -1.0 -4.6 class I SAM-dependent methyltransferase compare
MMP_RS06720 -1.0 -5.9 response regulator transcription factor compare
MMP_RS03110 -1.0 -3.4 glycosyltransferase family 2 protein compare
MMP_RS03145 -1.0 -2.4 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01905 -1.0 -7.1 glycosyltransferase compare
MMP_RS03600 -1.0 -1.4 triose-phosphate isomerase compare
MMP_RS04615 -1.0 -3.2 PDGLE domain-containing protein compare
MMP_RS01800 -1.0 -2.3 TIGR00303 family protein compare
MMP_RS06020 -1.0 -3.3 archaeoflavoprotein AfpA compare
MMP_RS04605 -1.0 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS04090 -1.0 -1.8 hypothetical protein compare
MMP_RS00915 -1.0 -3.6 DUF116 domain-containing protein compare
MMP_RS02875 -0.9 -4.5 chorismate pyruvate-lyase family protein compare
MMP_RS08645 -0.9 -3.8 UPF0179 family protein compare
MMP_RS07735 -0.9 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02885 -0.9 -6.0 molybdopterin biosynthesis protein compare
MMP_RS01885 -0.9 -4.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06940 -0.9 -2.2 polyprenyl diphosphate synthase compare
MMP_RS03140 -0.9 -5.1 hypothetical protein compare
MMP_RS07200 -0.9 -3.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04870 -0.9 -3.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS05545 -0.9 -3.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02100 -0.9 -2.9 metallophosphoesterase compare
MMP_RS06200 -0.9 -6.3 M24 family metallopeptidase compare
MMP_RS07630 -0.9 -0.6 ATP-binding cassette domain-containing protein compare
MMP_RS08595 -0.9 -0.9 flagellar protein C compare
MMP_RS07090 -0.9 -4.6 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01665 -0.9 -2.3 DUF2111 domain-containing protein compare
MMP_RS01895 -0.9 -5.9 flippase compare
MMP_RS01600 -0.8 -1.2 50S ribosomal protein L15e compare
MMP_RS08915 -0.8 -2.1 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS01875 -0.8 -4.7 N-acetyltransferase compare
MMP_RS01445 -0.8 -5.1 hypothetical protein compare
MMP_RS01045 -0.8 -4.1 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS03250 -0.8 -2.5 MJ1244 family protein compare
MMP_RS04620 -0.8 -4.8 cobalt transporter CbiM compare
MMP_RS01925 -0.8 -4.0 DUF1616 domain-containing protein compare
MMP_RS01100 -0.8 -1.3 ABC transporter ATP-binding protein compare
MMP_RS00520 -0.8 -1.4 RNA polymerase Rpb4 family protein compare
MMP_RS01840 -0.8 -4.6 TIGR00289 family protein compare
MMP_RS01890 -0.8 -3.5 nucleotide sugar dehydrogenase compare
MMP_RS06340 -0.8 -2.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07535 -0.8 -3.6 4Fe-4S binding protein compare
MMP_RS01915 -0.8 -5.5 DUF354 domain-containing protein compare
MMP_RS01910 -0.8 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06855 -0.8 -3.4 hypothetical protein compare
MMP_RS00320 -0.8 -1.5 class I SAM-dependent methyltransferase compare
MMP_RS05925 -0.7 -1.2 small nuclear ribonucleoprotein compare
MMP_RS08820 -0.7 -2.5 hypothetical protein compare
MMP_RS05555 -0.7 -1.1 DUF4040 domain-containing protein compare
MMP_RS00750 -0.7 -1.0 fumarate hydratase compare
MMP_RS05265 -0.7 -1.2 2-isopropylmalate synthase compare
MMP_RS01250 -0.7 -2.9 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS09055 -0.7 -0.9 CAP domain-containing protein compare
MMP_RS07190 -0.7 -2.8 chromosome segregation protein SMC compare
MMP_RS03700 -0.7 -2.8 sodium:proton antiporter compare
MMP_RS02345 -0.7 -1.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03390 -0.7 -3.2 malate dehydrogenase compare
MMP_RS06980 -0.7 -3.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01725 -0.7 -2.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS05525 -0.7 -2.8 calcium/sodium antiporter compare
MMP_RS06840 -0.7 -0.6 DNA-directed RNA polymerase subunit N compare
MMP_RS03520 -0.7 -1.6 YwbE family protein compare
MMP_RS07425 -0.7 -2.2 GTP-binding protein compare
MMP_RS03100 -0.7 -1.9 hypothetical protein compare
MMP_RS05245 -0.7 -4.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS05315 -0.7 -1.2 hypothetical protein compare
MMP_RS01240 -0.7 -0.7 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS05445 -0.7 -3.4 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08440 -0.7 -2.4 cell division protein SepF compare
MMP_RS05930 -0.7 -0.9 3-isopropylmalate dehydratase large subunit compare
MMP_RS05550 -0.7 -0.5 cation:proton antiporter compare
MMP_RS02880 -0.6 -4.1 AmmeMemoRadiSam system radical SAM enzyme compare
MMP_RS01365 -0.6 -1.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08600 -0.6 -1.0 flagellar protein D compare
MMP_RS08330 -0.6 -2.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS02405 -0.6 -1.8 hypothetical protein compare
MMP_RS02190 -0.6 -1.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05420 -0.6 -2.0 DUF61 family protein compare
MMP_RS08860 -0.6 -2.6 MinD/ParA family protein compare
MMP_RS03080 -0.6 -1.6 universal stress protein compare
MMP_RS02930 -0.6 -1.4 class I SAM-dependent methyltransferase compare
MMP_RS08590 -0.6 -2.1 flagellin compare
MMP_RS03120 -0.6 -1.9 hypothetical protein compare
MMP_RS00720 -0.6 -3.5 metal-dependent hydrolase compare
MMP_RS07710 -0.6 -3.2 cell division protein FtsZ compare
MMP_RS04195 -0.6 -1.5 flavodoxin compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanol across organisms