Experiment set1IT052 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01650 +1.1 1.7 sulfurtransferase TusA family protein compare
MMP_RS02675 +1.0 1.5 hypothetical protein compare
MMP_RS02310 +0.8 2.0 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS06725 +0.8 5.7 hypothetical protein compare
MMP_RS00945 +0.8 1.6 PadR family transcriptional regulator compare
MMP_RS04015 +0.7 2.9 hypothetical protein compare
MMP_RS08750 +0.7 3.3 hypothetical protein compare
MMP_RS08275 +0.7 5.3 hypothetical protein compare
MMP_RS06860 +0.6 1.8 4Fe-4S binding protein compare
MMP_RS02595 +0.6 1.1 putative zinc-binding protein compare
MMP_RS05720 +0.6 2.0 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS07345 +0.6 2.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS05355 +0.6 0.7 hypothetical protein compare
MMP_RS06325 +0.6 2.4 hypothetical protein compare
MMP_RS07095 +0.6 1.3 PspC domain-containing protein compare
MMP_RS03895 +0.5 2.2 hypothetical protein compare
MMP_RS01675 +0.5 1.3 hypothetical protein compare
MMP_RS07815 +0.5 1.0 DUF2120 domain-containing protein compare
MMP_RS08835 +0.5 3.4 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS03535 +0.5 1.8 helix-turn-helix transcriptional regulator compare
MMP_RS09025 +0.5 0.7 hypothetical protein compare
MMP_RS08105 +0.5 2.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS08930 +0.4 1.0 hypothetical protein compare
MMP_RS06005 +0.4 2.7 heavy-metal-associated domain-containing protein compare
MMP_RS08310 +0.4 1.3 TMEM165/GDT1 family protein compare
MMP_RS04520 +0.4 2.1 nucleoside deaminase compare
MMP_RS07835 +0.4 1.7 TldD/PmbA family protein compare
MMP_RS08940 +0.4 0.7 MetS family NSS transporter small subunit compare
MMP_RS02815 +0.4 1.3 hypothetical protein compare
MMP_RS01775 +0.4 1.0 TIGR00297 family protein compare
MMP_RS02790 +0.4 0.7 class III signal peptide-containing protein compare
MMP_RS06975 +0.4 1.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00290 +0.4 2.5 hypothetical protein compare
MMP_RS06910 +0.4 2.8 RlmF-related methyltransferase compare
MMP_RS08455 +0.4 1.8 multiprotein bridging factor aMBF1 compare
MMP_RS05365 +0.4 0.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS01720 +0.4 0.8 replication factor C large subunit compare
MMP_RS03960 +0.4 0.4 hypothetical protein compare
MMP_RS08100 +0.3 1.1 8-amino-7-oxononanoate synthase compare
MMP_RS03775 +0.3 1.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS00400 +0.3 2.2 tributyrin esterase compare
MMP_RS06445 +0.3 2.1 DUF89 domain-containing protein compare
MMP_RS07555 +0.3 0.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS02470 +0.3 0.7 helix-turn-helix transcriptional regulator compare
MMP_RS06435 +0.3 1.8 CBS domain-containing protein compare
MMP_RS09050 +0.3 1.7 CAP domain-containing protein compare
MMP_RS00625 +0.3 1.7 hypothetical protein compare
MMP_RS08390 +0.3 2.2 DUF5400 domain-containing protein compare
MMP_RS03215 +0.3 2.5 MBL fold metallo-hydrolase compare
MMP_RS02985 +0.3 1.4 hypothetical protein compare
MMP_RS08760 +0.3 1.4 hypothetical protein compare
MMP_RS05660 +0.3 1.9 phosphate ABC transporter substrate-binding protein compare
MMP_RS06140 +0.3 1.2 radical SAM protein compare
MMP_RS08640 +0.3 2.2 TIM barrel protein compare
MMP_RS05715 +0.3 1.9 hypothetical protein compare
MMP_RS02495 +0.3 1.1 hypothetical protein compare
MMP_RS08850 +0.3 2.8 hypothetical protein compare
MMP_RS00530 +0.3 2.3 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS00660 +0.3 2.4 alkaline phosphatase family protein compare
MMP_RS04265 +0.3 1.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06735 +0.3 1.8 class I SAM-dependent rRNA methyltransferase compare
MMP_RS07895 +0.3 1.4 cytochrome c compare
MMP_RS08700 +0.3 2.3 hypothetical protein compare
MMP_RS08480 +0.3 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS06015 +0.3 1.5 flavodoxin family protein compare
MMP_RS09030 +0.3 1.7 hypothetical protein compare
MMP_RS02500 +0.3 1.9 minichromosome maintenance protein MCM compare
MMP_RS01835 +0.3 2.0 hypothetical protein compare
MMP_RS06370 +0.3 1.2 biotin synthase BioB compare
MMP_RS00145 +0.3 1.9 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08325 +0.3 2.4 hypothetical protein compare
MMP_RS00140 +0.3 1.3 DUF192 domain-containing protein compare
MMP_RS03545 +0.3 1.6 ATP-binding protein compare
MMP_RS08845 +0.3 2.0 archaellum operon transcriptional activator EarA family protein compare
MMP_RS07645 +0.3 1.3 aldehyde dehydrogenase family protein compare
MMP_RS06335 +0.3 1.2 HAD family hydrolase compare
MMP_RS02770 +0.3 1.9 hypothetical protein compare
MMP_RS06745 +0.3 1.1 DUF2119 domain-containing protein compare
MMP_RS03420 +0.3 1.2 acetolactate synthase small subunit compare
MMP_RS06110 +0.3 0.9 ATP-dependent protease LonB compare
MMP_RS07195 +0.3 2.1 M20 family metallo-hydrolase compare
MMP_RS07550 +0.3 2.1 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS02605 +0.3 0.3 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS06375 +0.3 1.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08315 +0.3 0.9 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS00480 +0.3 1.6 hypothetical protein compare
MMP_RS02970 +0.3 1.7 hypothetical protein compare
MMP_RS07650 +0.3 1.7 TldD/PmbA family protein compare
MMP_RS06150 +0.3 2.2 hypothetical protein compare
MMP_RS04225 +0.3 1.3 hypothetical protein compare
MMP_RS06660 +0.3 1.9 glycosyltransferase family 4 protein compare
MMP_RS02360 +0.3 1.8 hypothetical protein compare
MMP_RS06590 +0.3 0.8 GNAT family N-acetyltransferase compare
MMP_RS02960 +0.3 1.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS01085 +0.3 0.7 hypothetical protein compare
MMP_RS00445 +0.3 1.7 7-carboxy-7-deazaguanine synthase QueE compare
MMP_RS08625 +0.3 1.6 type II/IV secretion system ATPase subunit compare
MMP_RS02725 +0.2 1.5 molybdate ABC transporter permease subunit compare
MMP_RS06905 +0.2 1.0 hypothetical protein compare
MMP_RS06930 +0.2 1.4 MBL fold metallo-hydrolase compare
MMP_RS08160 +0.2 1.6 EamA family transporter compare
MMP_RS05675 +0.2 0.8 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS00390 +0.2 1.9 ammonium transporter compare
MMP_RS02765 +0.2 1.3 ABC transporter ATP-binding protein compare
MMP_RS08285 +0.2 1.5 serine/threonine protein kinase compare
MMP_RS06250 +0.2 1.4 hypothetical protein compare
MMP_RS01620 +0.2 1.1 hypothetical protein compare
MMP_RS00085 +0.2 1.8 DNA cytosine methyltransferase compare
MMP_RS01115 +0.2 1.6 molybdopterin molybdotransferase MoeA compare
MMP_RS07820 +0.2 0.6 UPF0104 family protein compare
MMP_RS08630 +0.2 1.2 archaellar assembly protein FlaJ compare
MMP_RS07860 +0.2 0.3 hypothetical protein compare
MMP_RS03780 +0.2 1.7 4Fe-4S binding protein compare
MMP_RS06970 +0.2 1.4 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS08410 +0.2 1.3 DUF169 domain-containing protein compare
MMP_RS00105 +0.2 1.3 hypothetical protein compare
MMP_RS03760 +0.2 1.6 hypothetical protein compare
MMP_RS00385 +0.2 1.3 P-II family nitrogen regulator compare
MMP_RS03675 +0.2 1.8 RimK family alpha-L-glutamate ligase compare
MMP_RS01855 +0.2 1.6 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS08670 +0.2 1.3 metallophosphoesterase compare
MMP_RS06875 +0.2 1.4 FAD-dependent oxidoreductase compare
MMP_RS07130 +0.2 1.7 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS00645 +0.2 1.6 iron ABC transporter permease compare
MMP_RS01320 +0.2 0.7 hypothetical protein compare
MMP_RS02690 +0.2 1.3 FmdE family protein compare
MMP_RS01980 +0.2 1.6 trimeric intracellular cation channel family protein compare
MMP_RS07840 +0.2 0.8 ribonuclease III compare
MMP_RS00055 +0.2 1.7 DUF2254 domain-containing protein compare
MMP_RS05505 +0.2 1.3 class IV adenylate cyclase compare
MMP_RS00130 +0.2 0.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS02475 +0.2 0.6 hypothetical protein compare
MMP_RS00650 +0.2 0.8 ABC transporter ATP-binding protein compare
MMP_RS01790 +0.2 1.4 restriction endonuclease compare
MMP_RS00955 +0.2 1.2 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS04675 +0.2 1.4 selenouridine synthase SelU-like subunit compare
MMP_RS06385 +0.2 1.0 hypothetical protein compare
MMP_RS02685 +0.2 1.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS01060 +0.2 1.4 calcium/sodium antiporter compare
MMP_RS00735 +0.2 0.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04175 +0.2 1.4 permease compare
MMP_RS02575 +0.2 1.2 CAAX prenyl protease Rce1 compare
MMP_RS01700 +0.2 0.2 dihydroxy-acid dehydratase compare
MMP_RS06935 +0.2 1.1 protease complex subunit PrcB family protein compare
MMP_RS00080 +0.2 1.0 RecB-family nuclease compare
MMP_RS07715 +0.2 1.2 YfcE family phosphodiesterase compare
MMP_RS07570 +0.2 1.3 nucleotidyltransferase family protein compare
MMP_RS09065 +0.2 1.5 hypothetical protein compare
MMP_RS00535 +0.2 0.7 TIGR00375 family protein compare
MMP_RS00700 +0.2 0.7 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS03735 +0.2 1.4 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06530 +0.2 1.0 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS00555 +0.2 1.3 MFS transporter compare
MMP_RS08665 +0.2 1.4 hypothetical protein compare
MMP_RS00155 +0.2 0.8 heavy metal-binding domain-containing protein compare
MMP_RS00800 +0.2 1.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08615 +0.2 0.5 flagellar protein G compare
MMP_RS03325 +0.2 1.0 hypothetical protein compare
MMP_RS03870 +0.2 1.0 purine NTPase compare
MMP_RS08475 +0.2 0.9 ABC transporter permease compare
MMP_RS07100 +0.2 1.2 hypothetical protein compare
MMP_RS07135 +0.2 1.1 coenzyme F420 hydrogenase subunit beta compare
MMP_RS00435 +0.2 1.2 CPBP family intramembrane metalloprotease compare
MMP_RS04340 +0.2 1.3 uroporphyrinogen decarboxylase compare
MMP_RS08725 +0.2 0.1 Ni/Fe hydrogenase subunit alpha compare
MMP_RS07850 +0.2 0.6 prephenate dehydratase compare
MMP_RS00770 +0.2 0.7 hypothetical protein compare
MMP_RS08095 +0.2 1.0 dethiobiotin synthase compare
MMP_RS06190 +0.2 1.0 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS02320 +0.2 1.1 glutamate-cysteine ligase family protein compare
MMP_RS05680 +0.2 1.3 phosphate signaling complex protein PhoU compare
MMP_RS08945 +0.2 1.4 hypothetical protein compare
MMP_RS01070 +0.2 1.4 hypothetical protein compare
MMP_RS07925 +0.2 0.7 haloacid dehalogenase compare
MMP_RS07765 +0.2 1.3 sodium:alanine symporter family protein compare
MMP_RS06900 +0.2 0.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00855 +0.2 1.0 DUF367 family protein compare
MMP_RS05080 +0.2 1.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS00670 +0.2 0.7 TIM barrel protein compare
MMP_RS01075 +0.2 0.4 hypothetical protein compare
MMP_RS06550 +0.2 0.9 AMP-binding protein compare
MMP_RS02085 +0.2 1.1 inosine/xanthosine triphosphatase compare
MMP_RS08130 +0.2 1.1 IGHMBP2 family helicase compare
MMP_RS00975 +0.2 1.2 HD domain-containing protein compare
MMP_RS05000 +0.2 1.1 FmdE family protein compare
MMP_RS01690 +0.2 1.1 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS00430 +0.2 0.6 hypothetical protein compare
MMP_RS02580 +0.2 0.6 cupin domain-containing protein compare
MMP_RS08610 +0.2 1.2 flagellar protein F compare
MMP_RS06075 +0.2 0.8 class I SAM-dependent methyltransferase compare
MMP_RS00100 +0.2 1.1 tRNA pseudouridine(13) synthase TruD compare
MMP_RS08225 +0.2 1.1 RimK family alpha-L-glutamate ligase compare
MMP_RS02850 +0.2 1.1 hypothetical protein compare
MMP_RS02170 +0.1 0.7 CBS domain-containing protein compare
MMP_RS04835 +0.1 0.9 chemotaxis protein CheC compare
MMP_RS00630 +0.1 0.9 ECF transporter S component compare
MMP_RS00285 +0.1 0.9 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS05085 +0.1 1.1 AAA family ATPase compare
MMP_RS05275 +0.1 1.0 AI-2E family transporter compare
MMP_RS00450 +0.1 0.3 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanol across organisms