Experiment set1IT052 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Xylose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14565 -7.4 -12.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12780 -7.3 -8.7 M20 family metallo-hydrolase compare
HMPREF1058_RS08840 -7.1 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15870 -7.0 -6.9 ATP phosphoribosyltransferase compare
HMPREF1058_RS14770 -7.0 -6.8 prephenate dehydrogenase compare
HMPREF1058_RS08845 -6.9 -11.5 argininosuccinate synthase compare
HMPREF1058_RS08640 -6.8 -4.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07190 -6.8 -6.6 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS12115 -6.7 -13.9 acetylglutamate kinase compare
HMPREF1058_RS12490 -6.7 -5.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14545 -6.7 -12.1 2-isopropylmalate synthase compare
HMPREF1058_RS08645 -6.7 -12.1 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS15880 -6.6 -9.0 histidinol-phosphate transaminase compare
HMPREF1058_RS14730 -6.6 -11.8 threonine synthase compare
HMPREF1058_RS09675 -6.6 -6.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14785 -6.6 -4.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS07200 -6.5 -10.9 tryptophan synthase subunit alpha compare
HMPREF1058_RS15885 -6.4 -9.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14610 -6.4 -16.0 adenylosuccinate synthase compare
HMPREF1058_RS08025 -6.3 -6.1 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS09585 -6.3 -21.5 argininosuccinate lyase compare
HMPREF1058_RS15875 -6.2 -7.4 histidinol dehydrogenase compare
HMPREF1058_RS11270 -6.2 -7.4 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS07185 -6.2 -10.4 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14725 -6.2 -13.2 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS08830 -6.2 -10.8 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS10075 -6.1 -14.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14720 -6.1 -18.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08850 -6.0 -11.8 N-acetyltransferase compare
HMPREF1058_RS14795 -6.0 -7.2 prephenate dehydratase compare
HMPREF1058_RS16760 -6.0 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS10080 -5.9 -15.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS14550 -5.9 -14.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07170 -5.9 -12.5 tryptophan synthase subunit beta compare
HMPREF1058_RS06180 -5.8 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS08650 -5.8 -13.1 glutamate 5-kinase compare
HMPREF1058_RS02220 -5.8 -6.9 branched-chain amino acid aminotransferase compare
HMPREF1058_RS13795 -5.7 -12.8 DUF4954 family protein compare
HMPREF1058_RS06195 -5.7 -5.6 diaminopimelate decarboxylase compare
HMPREF1058_RS14920 -5.7 -15.1 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS03000 -5.7 -7.8 IMP dehydrogenase compare
HMPREF1058_RS16820 -5.6 -10.1 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS06655 -5.6 -14.5 carbohydrate kinase compare
HMPREF1058_RS10995 -5.6 -7.7 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS16815 -5.6 -14.0 dihydroxy-acid dehydratase compare
HMPREF1058_RS07175 -5.6 -11.9 anthranilate synthase component I family protein compare
HMPREF1058_RS07955 -5.5 -12.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS06170 -5.5 -7.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS07195 -5.4 -5.9 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS14555 -5.4 -3.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS03800 -5.4 -9.7 serine hydroxymethyltransferase compare
HMPREF1058_RS06175 -5.4 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16835 -5.4 -8.2 ketol-acid reductoisomerase compare
HMPREF1058_RS06650 -5.2 -7.2 xylose isomerase compare
HMPREF1058_RS08855 -5.1 -8.5 arginine repressor compare
HMPREF1058_RS04295 -5.1 -3.5 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS02170 -5.0 -9.7 hypothetical protein compare
HMPREF1058_RS15075 -4.9 -13.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS14590 -4.9 -3.4 AraC family transcriptional regulator compare
HMPREF1058_RS04080 -4.8 -4.7 AAA family ATPase compare
HMPREF1058_RS04070 -4.8 -4.7 hypothetical protein compare
HMPREF1058_RS04300 -4.7 -5.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS17155 -4.7 -3.3 dCMP deaminase family protein compare
HMPREF1058_RS14490 -4.7 -15.5 S9 family peptidase compare
HMPREF1058_RS07655 -4.7 -2.6 hypothetical protein compare
HMPREF1058_RS14790 -4.7 -16.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS00700 -4.7 -13.1 DUF4831 family protein compare
HMPREF1058_RS05780 -4.4 -10.7 PD40 domain-containing protein compare
HMPREF1058_RS02405 -4.4 -21.8 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS08325 -4.4 -8.6 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS04065 -4.4 -4.2 VWA domain-containing protein compare
HMPREF1058_RS17080 -4.2 -5.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS03085 -4.2 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14560 -4.2 -9.1 2-isopropylmalate synthase compare
HMPREF1058_RS06165 -4.1 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS02410 -4.1 -24.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS11730 -4.1 -2.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS15645 -4.1 -9.0 NUDIX hydrolase compare
HMPREF1058_RS14005 -4.1 -2.8 3-dehydroquinate synthase compare
HMPREF1058_RS07670 -4.1 -4.8 HAMP domain-containing histidine kinase compare
HMPREF1058_RS04075 -4.1 -4.8 DUF58 domain-containing protein compare
HMPREF1058_RS11205 -4.0 -3.9 radical SAM protein compare
HMPREF1058_RS07180 -4.0 -7.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS04050 -4.0 -6.1 protein BatD compare
HMPREF1058_RS15435 -4.0 -13.5 hypothetical protein compare
HMPREF1058_RS17815 -4.0 -8.8 MFS transporter compare
HMPREF1058_RS16500 -3.8 -7.7 OadG family protein compare
HMPREF1058_RS02975 -3.7 -4.2 hypothetical protein compare
HMPREF1058_RS16495 -3.7 -5.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS13970 -3.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS00590 -3.7 -6.0 hypothetical protein compare
HMPREF1058_RS08835 -3.7 -11.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS12110 -3.6 -11.5 biosynthetic arginine decarboxylase compare
HMPREF1058_RS16730 -3.6 -3.5 chorismate synthase compare
HMPREF1058_RS17035 -3.6 -12.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS03535 -3.6 -2.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS09685 -3.6 -15.4 tetratricopeptide repeat protein compare
HMPREF1058_RS05140 -3.5 -4.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS12105 -3.5 -3.6 shikimate kinase compare
HMPREF1058_RS11310 -3.5 -10.2 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS16505 -3.5 -12.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS04365 -3.5 -17.0 translocation/assembly module TamB compare
HMPREF1058_RS00560 -3.4 -5.1 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS04375 -3.4 -13.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS06190 -3.3 -8.3 aspartate kinase compare
HMPREF1058_RS01640 -3.3 -16.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS14380 -3.3 -8.7 AAA family ATPase compare
HMPREF1058_RS17130 -3.2 -2.2 tetratricopeptide repeat protein compare
HMPREF1058_RS14200 -3.2 -13.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS02115 -3.2 -13.9 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS16825 -3.2 -7.4 acetolactate synthase small subunit compare
HMPREF1058_RS10820 -3.1 -16.2 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS03530 -3.1 -2.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS12505 -3.1 -5.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS18265 -3.0 -3.6 aspartate 1-decarboxylase compare
HMPREF1058_RS04045 -3.0 -7.5 tetratricopeptide repeat protein compare
HMPREF1058_RS16845 -3.0 -4.1 SurA N-terminal domain-containing protein compare
HMPREF1058_RS10955 -3.0 -9.0 phosphatase PAP2 family protein compare
HMPREF1058_RS18205 -3.0 -7.4 ferrous iron transport protein B compare
HMPREF1058_RS02750 -3.0 -3.5 BamA/TamA family outer membrane protein compare
HMPREF1058_RS03970 -3.0 -2.0 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS10720 -2.9 -6.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS15395 -2.9 -1.9 dihydroorotase compare
HMPREF1058_RS02755 -2.8 -3.9 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14215 -2.8 -4.6 (d)CMP kinase compare
HMPREF1058_RS02495 -2.8 -11.7 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS07100 -2.8 -10.6 D-xylose transporter XylE conserved
HMPREF1058_RS12070 -2.8 -5.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS18695 -2.7 -4.8 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS06225 -2.7 -3.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS03290 -2.6 -4.6 thiamine phosphate synthase compare
HMPREF1058_RS14385 -2.6 -16.2 DUF4435 domain-containing protein compare
HMPREF1058_RS18870 -2.6 -1.8 hypothetical protein compare
HMPREF1058_RS06660 -2.6 -6.0 NUDIX hydrolase compare
HMPREF1058_RS16750 -2.6 -1.8 shikimate dehydrogenase compare
HMPREF1058_RS02540 -2.6 -5.2 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS06080 -2.5 -7.0 glutamine synthetase III compare
HMPREF1058_RS01575 -2.5 -10.2 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS14505 -2.5 -1.7 mechanosensitive ion channel compare
HMPREF1058_RS01570 -2.5 -9.0 ABC transporter substrate-binding protein compare
HMPREF1058_RS01545 -2.5 -5.6 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS16510 -2.4 -4.9 methylmalonyl-CoA epimerase compare
HMPREF1058_RS01650 -2.4 -7.3 hypothetical protein compare
HMPREF1058_RS14035 -2.4 -2.3 hypothetical protein compare
HMPREF1058_RS13635 -2.4 -5.1 gliding motility lipoprotein GldH compare
HMPREF1058_RS01385 -2.4 -9.5 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS01550 -2.4 -10.4 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS01565 -2.4 -9.0 iron ABC transporter permease compare
HMPREF1058_RS11040 -2.4 -9.8 polysaccharide deacetylase family protein compare
HMPREF1058_RS01270 -2.3 -7.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS14465 -2.3 -3.4 enoyl-ACP reductase compare
HMPREF1058_RS13350 -2.2 -7.3 Trk system potassium transporter TrkA compare
HMPREF1058_RS09750 -2.2 -9.0 glycosyltransferase compare
HMPREF1058_RS01405 -2.2 -8.4 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS07040 -2.2 -13.0 tetratricopeptide repeat protein compare
HMPREF1058_RS17965 -2.2 -1.9 DUF452 family protein compare
HMPREF1058_RS14220 -2.2 -4.7 energy transducer TonB compare
HMPREF1058_RS05145 -2.2 -8.7 ATP-binding protein compare
HMPREF1058_RS01560 -2.2 -6.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS11915 -2.2 -2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02485 -2.2 -8.1 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS17885 -2.2 -14.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS01280 -2.1 -6.6 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS10270 -2.1 -3.5 hypothetical protein compare
HMPREF1058_RS07440 -2.1 -7.2 aspartate--ammonia ligase compare
HMPREF1058_RS01655 -2.0 -7.9 DUF4296 domain-containing protein compare
HMPREF1058_RS15920 -2.0 -3.2 hypothetical protein compare
HMPREF1058_RS08295 -2.0 -7.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS01540 -2.0 -8.3 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS02480 -1.9 -4.9 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS20295 -1.9 -1.7 hypothetical protein compare
HMPREF1058_RS15520 -1.9 -4.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS08535 -1.9 -3.6 elongation factor P compare
HMPREF1058_RS06600 -1.8 -4.2 DedA family protein compare
HMPREF1058_RS02545 -1.8 -9.7 histidine ammonia-lyase compare
HMPREF1058_RS00595 -1.8 -3.9 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS02525 -1.8 -9.1 glutamate formimidoyltransferase compare
HMPREF1058_RS17205 -1.8 -2.9 DUF4199 domain-containing protein compare
HMPREF1058_RS12705 -1.8 -8.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS17060 -1.8 -7.7 HAD family hydrolase compare
HMPREF1058_RS08520 -1.7 -5.0 DUF59 domain-containing protein compare
HMPREF1058_RS11890 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS03075 -1.7 -7.6 DNA helicase RecQ compare
HMPREF1058_RS01395 -1.7 -7.5 cobyric acid synthase compare
HMPREF1058_RS10970 -1.7 -8.1 ribonuclease R compare
HMPREF1058_RS02535 -1.7 -7.0 imidazolonepropionase compare
HMPREF1058_RS11920 -1.7 -6.7 DUF2975 domain-containing protein compare
HMPREF1058_RS15975 -1.7 -6.6 saccharopine dehydrogenase family protein compare
HMPREF1058_RS06560 -1.6 -7.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS10840 -1.6 -3.1 hypothetical protein compare
HMPREF1058_RS01745 -1.6 -4.9 PorT family protein compare
HMPREF1058_RS01275 -1.6 -6.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS02520 -1.6 -10.6 urocanate hydratase compare
HMPREF1058_RS06310 -1.6 -6.9 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS05765 -1.6 -8.9 nucleoside phosphorylase compare
HMPREF1058_RS09745 -1.6 -8.9 glycosyltransferase compare
HMPREF1058_RS01925 -1.6 -4.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS06820 -1.6 -8.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS03265 -1.6 -9.9 2-iminoacetate synthase ThiH compare
HMPREF1058_RS01390 -1.5 -4.2 pyridoxal phosphate-dependent class II aminotransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Xylose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Xylose across organisms