Experiment set1IT051 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Zinc sulfate heptahydrate 0.08 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS19940 +3.0 27.8 hypothetical protein compare
CA265_RS22690 +2.9 22.6 hypothetical protein compare
CA265_RS23510 +2.8 18.3 energy transducer TonB compare
CA265_RS08855 +2.7 21.9 MFS transporter compare
CA265_RS19945 +2.7 13.0 hypothetical protein compare
CA265_RS05160 +2.7 25.0 hypothetical protein compare
CA265_RS14765 +2.5 22.5 alkaline phosphatase family protein compare
CA265_RS23525 +2.4 19.4 hypothetical protein compare
CA265_RS21060 +2.3 10.2 hypothetical protein compare
CA265_RS23145 +2.3 10.1 hypothetical protein compare
CA265_RS16005 +2.2 9.7 hypothetical protein compare
CA265_RS23840 +2.1 15.9 S1/P1 Nuclease compare
CA265_RS23505 +2.1 10.2 biopolymer transporter ExbD compare
CA265_RS20350 +2.0 11.7 gliding motility lipoprotein GldH compare
CA265_RS18745 +2.0 4.0 hypothetical protein compare
CA265_RS12745 +2.0 8.9 NUDIX hydrolase compare
CA265_RS19740 +1.9 8.5 gliding motility lipoprotein GldD compare
CA265_RS00490 +1.9 2.9 hypothetical protein compare
CA265_RS15200 +1.9 8.9 hypothetical protein compare
CA265_RS24720 +1.9 16.4 multidrug transporter compare
CA265_RS23515 +1.8 6.5 hypothetical protein compare
CA265_RS24255 +1.8 7.4 sugar kinase compare
CA265_RS16130 +1.7 6.3 cell division protein FtsX compare
CA265_RS22820 +1.7 9.1 flagellar motor protein MotB compare
CA265_RS00925 +1.7 4.7 hypothetical protein compare
CA265_RS19030 +1.7 11.9 hypothetical protein compare
CA265_RS02990 +1.6 10.2 mannosyltransferase compare
CA265_RS18115 +1.6 13.5 gliding motility protein GldN compare
CA265_RS15615 +1.6 7.3 malate dehydrogenase compare
CA265_RS17555 +1.6 13.3 hypothetical protein compare
CA265_RS15640 +1.6 11.3 sugar kinase compare
CA265_RS18990 +1.6 15.0 cell surface protein SprA compare
CA265_RS01975 +1.6 4.6 cell division protein compare
CA265_RS15085 +1.6 10.0 hypothetical protein compare
CA265_RS18225 +1.6 10.0 DNA-binding response regulator compare
CA265_RS03260 +1.6 11.3 multidrug ABC transporter ATP-binding protein compare
CA265_RS18120 +1.5 12.1 gliding motility protein GldM compare
CA265_RS18130 +1.5 12.9 gliding motility-associated lipoprotein compare
CA265_RS08155 +1.5 11.1 Bcr/CflA family drug resistance efflux transporter compare
CA265_RS23635 +1.5 13.1 gliding motility lipoprotein GldJ compare
CA265_RS18530 +1.5 5.6 aspartate aminotransferase family protein compare
CA265_RS00655 +1.5 9.4 RNA polymerase subunit sigma-24 compare
CA265_RS12890 +1.5 11.0 hypothetical protein compare
CA265_RS23640 +1.4 12.0 hypothetical protein compare
CA265_RS03290 +1.4 10.9 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS03295 +1.4 11.1 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18125 +1.4 9.8 gliding motility protein GldL compare
CA265_RS23985 +1.4 9.5 gliding motility lipoprotein GldB compare
CA265_RS15070 +1.3 6.0 hypothetical protein compare
CA265_RS06585 +1.3 8.7 hypothetical protein compare
CA265_RS23520 +1.3 9.1 phosphate ABC transporter substrate-binding protein compare
CA265_RS12945 +1.3 10.0 hypothetical protein compare
CA265_RS19380 +1.3 8.4 beta-carotene 15,15'-monooxygenase compare
CA265_RS05165 +1.3 6.2 hypothetical protein compare
CA265_RS14825 +1.2 2.7 outer membrane protein assembly factor BamD compare
CA265_RS14535 +1.2 4.3 DUF4783 domain-containing protein compare
CA265_RS10000 +1.2 4.2 nitrite reductase small subunit compare
CA265_RS15115 +1.2 9.0 porin compare
CA265_RS22800 +1.2 9.0 glycosyl transferase compare
CA265_RS15195 +1.2 6.2 hypothetical protein compare
CA265_RS09435 +1.2 6.3 hypothetical protein compare
CA265_RS04385 +1.2 4.5 hypothetical protein compare
CA265_RS18770 +1.2 4.5 hypothetical protein compare
CA265_RS17560 +1.1 6.4 peptidylprolyl isomerase compare
CA265_RS21905 +1.1 5.6 hypothetical protein compare
CA265_RS04330 +1.1 6.7 transcriptional regulator compare
CA265_RS22805 +1.1 7.2 glycosyl transferase compare
CA265_RS15895 +1.1 4.6 hypothetical protein compare
CA265_RS02760 +1.1 2.4 hypothetical protein compare
CA265_RS10475 +1.0 5.7 amidinotransferase compare
CA265_RS08085 +1.0 7.3 aminodeoxychorismate lyase compare
CA265_RS13695 +1.0 3.8 hypothetical protein compare
CA265_RS24790 +1.0 7.7 peptidylprolyl isomerase compare
CA265_RS00940 +1.0 3.0 hypothetical protein compare
CA265_RS12780 +1.0 2.7 hypothetical protein compare
CA265_RS11670 +1.0 5.3 hypothetical protein compare
CA265_RS01205 +1.0 5.4 import component protein compare
CA265_RS17455 +1.0 4.8 hypothetical protein compare
CA265_RS02965 +1.0 5.8 hypothetical protein compare
CA265_RS08070 +1.0 2.1 tRNA-Ser compare
CA265_RS15330 +1.0 2.6 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS19575 +0.9 3.0 glycoside hydrolase compare
CA265_RS14580 +0.9 5.5 cytidylate kinase compare
CA265_RS02765 +0.9 2.3 cell division protein ZapA compare
CA265_RS15005 +0.9 7.5 porin compare
CA265_RS24680 +0.9 5.0 hypothetical protein compare
CA265_RS08905 +0.9 4.6 DNA helicase RecQ compare
CA265_RS14750 +0.9 5.1 energy transducer TonB compare
CA265_RS19025 +0.9 2.7 peptidase M23 compare
CA265_RS19535 +0.9 7.0 hypothetical protein compare
CA265_RS01195 +0.9 4.0 hypothetical protein compare
CA265_RS01200 +0.9 3.8 hypothetical protein compare
CA265_RS04395 +0.9 5.2 heptosyltransferase compare
CA265_RS05460 +0.9 6.1 glycosyl transferase family 2 compare
CA265_RS18090 +0.9 7.2 gliding motility protein compare
CA265_RS10610 +0.9 3.8 hypothetical protein compare
CA265_RS21865 +0.9 5.3 two-component sensor histidine kinase compare
CA265_RS06320 +0.9 5.2 hypothetical protein compare
CA265_RS04400 +0.9 4.7 hypothetical protein compare
CA265_RS21690 +0.9 4.0 hypothetical protein compare
CA265_RS18495 +0.8 2.2 hypothetical protein compare
CA265_RS18140 +0.8 5.6 DUF4271 domain-containing protein compare
CA265_RS08850 +0.8 3.0 hypothetical protein compare
CA265_RS24655 +0.8 5.7 maltose phosphorylase (EC 2.4.1.8) (from data) compare
CA265_RS25360 +0.8 3.1 phosphoribosyltransferase compare
CA265_RS21900 +0.8 6.9 two-component sensor histidine kinase compare
CA265_RS18540 +0.8 2.4 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS20375 +0.8 3.7 methyltransferase compare
CA265_RS23705 +0.8 2.9 esterase compare
CA265_RS04990 +0.8 3.2 short chain dehydrogenase compare
CA265_RS21255 +0.8 5.2 hypothetical protein compare
CA265_RS23845 +0.8 3.4 fumarate hydratase compare
CA265_RS10470 +0.8 5.9 amidinotransferase compare
CA265_RS19465 +0.8 3.1 protein tyrosine phosphatase compare
CA265_RS18500 +0.8 4.7 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS22475 +0.8 2.8 hypothetical protein compare
CA265_RS02605 +0.8 5.2 hypothetical protein compare
CA265_RS11120 +0.8 4.8 phosphohydrolase compare
CA265_RS14740 +0.7 4.2 biopolymer transporter ExbB compare
CA265_RS23710 +0.7 3.9 esterase compare
CA265_RS07230 +0.7 1.3 hypothetical protein compare
CA265_RS14670 +0.7 5.6 hypothetical protein compare
CA265_RS15650 +0.7 3.1 hypothetical protein compare
CA265_RS00855 +0.7 4.8 hypothetical protein compare
CA265_RS09720 +0.7 5.1 transglycosylase compare
CA265_RS13225 +0.7 4.8 exonuclease compare
CA265_RS04835 +0.7 3.3 dihydrodipicolinate synthetase compare
CA265_RS10495 +0.7 1.4 hypothetical protein compare
CA265_RS00270 +0.7 1.5 hypothetical protein compare
CA265_RS21470 +0.7 3.7 elongation factor P compare
CA265_RS00665 +0.7 1.8 lysine transporter LysE compare
CA265_RS08445 +0.7 1.2 endonuclease compare
CA265_RS04820 +0.7 4.4 GntR family transcriptional regulator compare
CA265_RS10600 +0.6 4.1 RNA polymerase subunit sigma-24 compare
CA265_RS22720 +0.6 2.4 hypothetical protein compare
CA265_RS24980 +0.6 1.7 hypothetical protein compare
CA265_RS14665 +0.6 5.0 hypothetical protein compare
CA265_RS20975 +0.6 2.3 hypothetical protein compare
CA265_RS21290 +0.6 2.2 hypothetical protein compare
CA265_RS06610 +0.6 4.9 transmembrane HD family protein compare
CA265_RS00025 +0.6 1.4 hypothetical protein compare
CA265_RS24385 +0.6 1.8 GNAT family N-acetyltransferase compare
CA265_RS16000 +0.6 3.7 hypothetical protein compare
CA265_RS17760 +0.6 4.6 hypothetical protein compare
CA265_RS18035 +0.6 2.8 hypothetical protein compare
CA265_RS15165 +0.6 3.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS20610 +0.6 1.3 hypothetical protein compare
CA265_RS07515 +0.6 4.0 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS19680 +0.6 3.6 DNA-binding transcriptional regulator OxyR compare
CA265_RS05720 +0.6 3.1 hypothetical protein compare
CA265_RS23800 +0.6 2.8 methyltransferase type 12 compare
CA265_RS00335 +0.6 0.7 hypothetical protein compare
CA265_RS19405 +0.6 2.0 transcriptional regulator compare
CA265_RS23090 +0.6 2.9 transcriptional regulator compare
CA265_RS00795 +0.6 1.9 HAD family hydrolase compare
CA265_RS17990 +0.6 3.1 hypothetical protein compare
CA265_RS02580 +0.5 2.6 hypothetical protein compare
CA265_RS04645 +0.5 3.7 cation transporter compare
CA265_RS19645 +0.5 3.2 GNAT family N-acetyltransferase compare
CA265_RS04265 +0.5 2.0 hypothetical protein compare
CA265_RS10195 +0.5 3.2 hypothetical protein compare
CA265_RS23615 +0.5 4.4 hemolysin compare
CA265_RS06680 +0.5 3.7 hypothetical protein compare
CA265_RS10615 +0.5 2.6 diacylglycerol kinase compare
CA265_RS20645 +0.5 2.5 RNA polymerase subunit sigma-70 compare
CA265_RS00165 +0.5 2.9 hypothetical protein compare
CA265_RS18550 +0.5 1.1 N-acetyltransferase compare
CA265_RS09035 +0.5 2.1 anti-anti-sigma factor compare
CA265_RS20330 +0.5 4.4 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS21250 +0.5 4.0 thioredoxin compare
CA265_RS20305 +0.5 4.4 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS21260 +0.5 3.8 hypothetical protein compare
CA265_RS20395 +0.5 2.0 hypothetical protein compare
CA265_RS23850 +0.5 2.2 hypothetical protein compare
CA265_RS23140 +0.5 2.6 hypothetical protein compare
CA265_RS24845 +0.5 1.6 STAS/SEC14 domain-containing protein compare
CA265_RS10480 +0.5 1.9 hypothetical protein compare
CA265_RS09335 +0.5 3.0 DUF4442 domain-containing protein compare
CA265_RS25235 +0.5 3.4 hypothetical protein compare
CA265_RS06595 +0.5 1.0 Arc family DNA binding domain-containing protein compare
CA265_RS07470 +0.5 1.4 hypothetical protein compare
CA265_RS09885 +0.5 2.8 hypothetical protein compare
CA265_RS21330 +0.5 3.1 TetR family transcriptional regulator compare
CA265_RS04010 +0.5 3.4 hypothetical protein compare
CA265_RS09425 +0.5 1.4 hypothetical protein compare
CA265_RS19000 +0.5 4.0 NADP-dependent malic enzyme compare
CA265_RS03050 +0.5 1.9 hypothetical protein compare
CA265_RS20310 +0.5 4.2 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS13470 +0.5 3.1 hypothetical protein compare
CA265_RS16380 +0.5 3.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS12940 +0.5 2.3 peptidase dimerization domain protein compare
CA265_RS19605 +0.5 3.0 serine hydrolase compare
CA265_RS21945 +0.5 2.8 DeoR family transcriptional regulator compare
CA265_RS11000 +0.5 1.5 large-conductance mechanosensitive channel compare
CA265_RS18945 +0.5 3.1 LacI family transcriptional regulator compare
CA265_RS08825 +0.5 3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS19345 +0.5 3.1 hypothetical protein compare
CA265_RS14705 +0.5 3.7 hypothetical protein compare
CA265_RS22860 +0.5 2.4 hypothetical protein compare
CA265_RS22750 +0.5 2.0 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Zinc sulfate heptahydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress Zinc sulfate heptahydrate across organisms