Experiment set1IT051 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Xylose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08840 -7.9 -7.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS12115 -7.6 -10.4 acetylglutamate kinase compare
HMPREF1058_RS07195 -7.2 -5.0 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS08645 -7.2 -9.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS12780 -7.2 -8.6 M20 family metallo-hydrolase compare
HMPREF1058_RS07200 -7.2 -9.9 tryptophan synthase subunit alpha compare
HMPREF1058_RS09585 -7.1 -16.0 argininosuccinate lyase compare
HMPREF1058_RS06170 -6.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS15870 -6.9 -6.7 ATP phosphoribosyltransferase compare
HMPREF1058_RS14565 -6.8 -13.8 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08830 -6.8 -9.3 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS14770 -6.7 -6.6 prephenate dehydrogenase compare
HMPREF1058_RS14720 -6.6 -14.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14545 -6.6 -11.8 2-isopropylmalate synthase compare
HMPREF1058_RS08845 -6.5 -11.7 argininosuccinate synthase compare
HMPREF1058_RS14730 -6.4 -11.6 threonine synthase compare
HMPREF1058_RS10075 -6.4 -14.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14550 -6.4 -12.2 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14610 -6.3 -15.9 adenylosuccinate synthase compare
HMPREF1058_RS02220 -6.3 -4.4 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07185 -6.3 -10.6 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS06655 -6.3 -9.7 carbohydrate kinase compare
HMPREF1058_RS07170 -6.3 -10.5 tryptophan synthase subunit beta compare
HMPREF1058_RS14725 -6.2 -13.9 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS15880 -6.2 -9.5 histidinol-phosphate transaminase compare
HMPREF1058_RS14785 -6.2 -6.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS15885 -6.1 -11.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14795 -6.1 -5.9 prephenate dehydratase compare
HMPREF1058_RS08650 -6.1 -10.9 glutamate 5-kinase compare
HMPREF1058_RS06175 -6.0 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS06180 -6.0 -5.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS03000 -6.0 -5.8 IMP dehydrogenase compare
HMPREF1058_RS14920 -5.9 -12.7 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS16760 -5.9 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS00565 -5.9 -13.0 hemolysin III family protein compare
HMPREF1058_RS07190 -5.9 -9.0 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS12490 -5.8 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS15875 -5.8 -8.0 histidinol dehydrogenase compare
HMPREF1058_RS16815 -5.8 -10.4 dihydroxy-acid dehydratase compare
HMPREF1058_RS10995 -5.7 -5.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06195 -5.7 -5.5 diaminopimelate decarboxylase compare
HMPREF1058_RS16820 -5.7 -8.7 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS09675 -5.7 -5.3 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS13795 -5.5 -12.7 DUF4954 family protein compare
HMPREF1058_RS16835 -5.4 -8.2 ketol-acid reductoisomerase compare
HMPREF1058_RS04065 -5.4 -3.2 VWA domain-containing protein compare
HMPREF1058_RS08850 -5.4 -8.2 N-acetyltransferase compare
HMPREF1058_RS14555 -5.3 -3.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS08025 -5.3 -8.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS04045 -5.2 -5.0 tetratricopeptide repeat protein compare
HMPREF1058_RS08640 -5.2 -3.9 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07955 -5.1 -14.4 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS11270 -5.1 -11.9 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS07175 -5.1 -12.6 anthranilate synthase component I family protein compare
HMPREF1058_RS10080 -5.0 -17.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS04295 -5.0 -3.5 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS11205 -5.0 -3.4 radical SAM protein compare
HMPREF1058_RS14790 -4.9 -15.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS06650 -4.9 -7.5 xylose isomerase compare
HMPREF1058_RS04300 -4.8 -4.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS04070 -4.8 -4.7 hypothetical protein compare
HMPREF1058_RS11730 -4.8 -3.2 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS02410 -4.8 -23.3 methylmalonyl-CoA mutase compare
HMPREF1058_RS02170 -4.6 -9.9 hypothetical protein compare
HMPREF1058_RS05780 -4.6 -10.7 PD40 domain-containing protein compare
HMPREF1058_RS04080 -4.6 -6.3 AAA family ATPase compare
HMPREF1058_RS12105 -4.6 -5.0 shikimate kinase compare
HMPREF1058_RS00700 -4.5 -14.1 DUF4831 family protein compare
HMPREF1058_RS15075 -4.5 -12.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS17815 -4.4 -8.5 MFS transporter compare
HMPREF1058_RS14560 -4.4 -9.2 2-isopropylmalate synthase compare
HMPREF1058_RS03800 -4.4 -11.7 serine hydroxymethyltransferase compare
HMPREF1058_RS00590 -4.4 -5.9 hypothetical protein compare
HMPREF1058_RS08835 -4.3 -10.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16510 -4.2 -5.0 methylmalonyl-CoA epimerase compare
HMPREF1058_RS04075 -4.2 -4.1 DUF58 domain-containing protein compare
HMPREF1058_RS03085 -4.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS04050 -4.1 -4.9 protein BatD compare
HMPREF1058_RS17035 -4.1 -12.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS02405 -4.1 -20.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS08855 -4.1 -6.5 arginine repressor compare
HMPREF1058_RS14005 -4.0 -2.7 3-dehydroquinate synthase compare
HMPREF1058_RS18695 -4.0 -4.7 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS05140 -3.9 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS16495 -3.8 -5.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS14490 -3.8 -16.0 S9 family peptidase compare
HMPREF1058_RS02975 -3.8 -4.2 hypothetical protein compare
HMPREF1058_RS07655 -3.8 -2.7 hypothetical protein compare
HMPREF1058_RS15435 -3.8 -13.4 hypothetical protein compare
HMPREF1058_RS09685 -3.8 -15.4 tetratricopeptide repeat protein compare
HMPREF1058_RS14590 -3.8 -4.4 AraC family transcriptional regulator compare
HMPREF1058_RS16505 -3.7 -12.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS08325 -3.7 -7.7 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS17080 -3.7 -3.8 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS07040 -3.7 -16.9 tetratricopeptide repeat protein compare
HMPREF1058_RS06165 -3.6 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS16825 -3.6 -7.2 acetolactate synthase small subunit compare
HMPREF1058_RS13970 -3.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS16730 -3.6 -3.5 chorismate synthase compare
HMPREF1058_RS03535 -3.5 -2.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS14200 -3.5 -15.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS01640 -3.4 -16.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06190 -3.4 -7.8 aspartate kinase compare
HMPREF1058_RS06225 -3.4 -5.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17155 -3.3 -5.5 dCMP deaminase family protein compare
HMPREF1058_RS18265 -3.3 -3.2 aspartate 1-decarboxylase compare
HMPREF1058_RS17885 -3.3 -18.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS07180 -3.2 -6.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS00560 -3.2 -5.3 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS05145 -3.2 -8.0 ATP-binding protein compare
HMPREF1058_RS17130 -3.2 -2.2 tetratricopeptide repeat protein compare
HMPREF1058_RS04365 -3.1 -16.4 translocation/assembly module TamB compare
HMPREF1058_RS04375 -3.1 -10.0 carbon-nitrogen hydrolase compare
HMPREF1058_RS10820 -3.1 -14.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS01745 -3.1 -8.4 PorT family protein compare
HMPREF1058_RS06660 -3.1 -6.9 NUDIX hydrolase compare
HMPREF1058_RS12070 -3.1 -4.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS03530 -3.1 -2.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS16845 -3.0 -3.6 SurA N-terminal domain-containing protein compare
HMPREF1058_RS01270 -3.0 -7.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS15645 -3.0 -9.0 NUDIX hydrolase compare
HMPREF1058_RS10720 -3.0 -5.9 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS09750 -2.9 -8.8 glycosyltransferase compare
HMPREF1058_RS02750 -2.9 -4.0 BamA/TamA family outer membrane protein compare
HMPREF1058_RS12505 -2.9 -4.8 RNA polymerase factor sigma-54 compare
HMPREF1058_RS03970 -2.9 -2.0 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS16260 -2.9 -5.9 hotdog fold thioesterase compare
HMPREF1058_RS02485 -2.8 -9.8 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS02115 -2.8 -12.8 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS15395 -2.8 -1.9 dihydroorotase compare
HMPREF1058_RS01385 -2.8 -10.0 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS10955 -2.8 -7.2 phosphatase PAP2 family protein compare
HMPREF1058_RS14380 -2.7 -8.4 AAA family ATPase compare
HMPREF1058_RS02755 -2.7 -3.7 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14465 -2.7 -2.6 enoyl-ACP reductase compare
HMPREF1058_RS14385 -2.7 -13.6 DUF4435 domain-containing protein compare
HMPREF1058_RS13635 -2.6 -6.0 gliding motility lipoprotein GldH compare
HMPREF1058_RS01925 -2.6 -2.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS16750 -2.5 -1.7 shikimate dehydrogenase compare
HMPREF1058_RS08295 -2.5 -7.8 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS02495 -2.5 -11.0 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS01405 -2.5 -9.4 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS17205 -2.5 -3.3 DUF4199 domain-containing protein compare
HMPREF1058_RS16500 -2.5 -5.5 OadG family protein compare
HMPREF1058_RS14505 -2.5 -1.7 mechanosensitive ion channel compare
HMPREF1058_RS15375 -2.4 -3.1 DUF4369 domain-containing protein compare
HMPREF1058_RS10920 -2.4 -3.6 viroplasmin family protein compare
HMPREF1058_RS05035 -2.4 -15.2 C69 family dipeptidase compare
HMPREF1058_RS11040 -2.4 -8.8 polysaccharide deacetylase family protein compare
HMPREF1058_RS01570 -2.4 -7.3 ABC transporter substrate-binding protein compare
HMPREF1058_RS02525 -2.4 -9.2 glutamate formimidoyltransferase compare
HMPREF1058_RS08275 -2.4 -14.6 DoxX family protein compare
HMPREF1058_RS01565 -2.4 -8.6 iron ABC transporter permease compare
HMPREF1058_RS01395 -2.3 -8.7 cobyric acid synthase compare
HMPREF1058_RS07670 -2.3 -2.9 HAMP domain-containing histidine kinase compare
HMPREF1058_RS12110 -2.3 -7.6 biosynthetic arginine decarboxylase compare
HMPREF1058_RS11310 -2.3 -7.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS13350 -2.3 -6.8 Trk system potassium transporter TrkA compare
HMPREF1058_RS02540 -2.3 -4.6 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS07440 -2.3 -7.7 aspartate--ammonia ligase compare
HMPREF1058_RS16255 -2.3 -9.7 isochorismate synthase compare
HMPREF1058_RS15520 -2.3 -4.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01280 -2.3 -5.7 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS01560 -2.2 -5.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS07090 -2.2 -3.0 hypothetical protein compare
HMPREF1058_RS02480 -2.2 -7.3 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS01575 -2.2 -7.8 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS07735 -2.2 -4.8 chloride channel protein compare
HMPREF1058_RS01650 -2.1 -6.9 hypothetical protein compare
HMPREF1058_RS07100 -2.1 -10.7 D-xylose transporter XylE conserved
HMPREF1058_RS02535 -2.1 -9.8 imidazolonepropionase compare
HMPREF1058_RS01540 -2.1 -8.8 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS11915 -2.1 -2.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18205 -2.1 -6.9 ferrous iron transport protein B compare
HMPREF1058_RS09610 -2.1 -7.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS01550 -2.0 -7.8 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS02545 -2.0 -9.4 histidine ammonia-lyase compare
HMPREF1058_RS12705 -2.0 -10.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS14605 -2.0 -5.6 transcriptional repressor compare
HMPREF1058_RS09485 -2.0 -13.4 PDZ domain-containing protein compare
HMPREF1058_RS11215 -2.0 -4.8 DUF4294 domain-containing protein compare
HMPREF1058_RS16440 -2.0 -3.7 endonuclease MutS2 compare
HMPREF1058_RS16250 -2.0 -9.8 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS01460 -1.9 -2.9 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS10970 -1.9 -8.6 ribonuclease R compare
HMPREF1058_RS15550 -1.9 -2.1 thioredoxin family protein compare
HMPREF1058_RS06600 -1.9 -4.9 DedA family protein compare
HMPREF1058_RS06080 -1.9 -6.5 glutamine synthetase III compare
HMPREF1058_RS06820 -1.8 -8.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS06310 -1.8 -7.2 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS02520 -1.8 -11.6 urocanate hydratase compare
HMPREF1058_RS14125 -1.7 -12.8 magnesium transporter compare
HMPREF1058_RS05765 -1.7 -8.9 nucleoside phosphorylase compare
HMPREF1058_RS03260 -1.7 -8.8 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS11625 -1.7 -11.7 S41 family peptidase compare
HMPREF1058_RS14215 -1.7 -3.8 (d)CMP kinase compare
HMPREF1058_RS17965 -1.7 -2.0 DUF452 family protein compare
HMPREF1058_RS12460 -1.7 -10.9 tetratricopeptide repeat protein compare
HMPREF1058_RS03285 -1.7 -6.4 thiazole synthase compare
HMPREF1058_RS10255 -1.7 -2.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Xylose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Xylose across organisms