Experiment set1IT050 for Azospirillum brasilense Sp245
LB with copper (II) chloride dihydrate 2 mM
Group: stressMedia: LB + copper (II) chloride dihydrate (2 mM)
Culturing: AzoBra_ML2a, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/5/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1180 B7,B8
Specific Phenotypes
For 4 genes in this experiment
For stress copper (II) chloride dihydrate in Azospirillum brasilense Sp245
For stress copper (II) chloride dihydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Formate hydrogenase | 3 |
| Anaerobic respiratory reductases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| formate oxidation to CO2 | 1 | 1 | 1 |
| oxalate degradation VI | 4 | 2 | 1 |
| oxalate degradation III | 5 | 2 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 8 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 5 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 14 | 1 |