Experiment set1IT050 for Pseudomonas syringae pv. syringae B728a

Compare to:

Green bean; epiphytic

200 most important genes:

  gene name fitness t score description  
Psyr_4580 -4.5 -3.1 anthranilate phosphoribosyltransferase compare
Psyr_1408 -3.9 -3.7 Holliday junction endonuclease RuvC compare
Psyr_0033 -3.6 -3.5 tryptophan synthase, alpha chain compare
Psyr_1663 -3.5 -5.7 phosphoribosylanthranilate isomerase compare
Psyr_0529 -3.4 -4.0 Glycosyl transferase, group 1 compare
Psyr_4609 -3.3 -13.1 anthranilate synthase, component I compare
Psyr_0917 -3.3 -5.0 ABC-2 compare
Psyr_0034 -3.2 -2.2 tryptophan synthase, beta chain compare
Psyr_4581 -3.1 -2.3 anthranilate synthase, component II compare
Psyr_4369 -3.0 -6.4 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4852 -3.0 -8.0 D-3-phosphoglycerate dehydrogenase compare
Psyr_4896 -2.9 -6.9 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_1668 -2.9 -7.3 amidophosphoribosyltransferase compare
Psyr_1269 -2.9 -3.9 phosphoribosylformylglycinamidine synthase compare
Psyr_0532 -2.9 -4.3 conserved hypothetical protein compare
Psyr_0918 -2.8 -9.6 ABC transporter compare
Psyr_0411 -2.7 -16.6 glutamate synthase (NADPH) large subunit compare
Psyr_0704 -2.6 -9.1 glutamate 5-kinase compare
Psyr_4683 -2.6 -3.8 dethiobiotin synthase compare
Psyr_4887 -2.5 -11.3 Peptidase S41A, C-terminal protease compare
Psyr_4893 -2.5 -2.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4270 -2.4 -8.4 serine hydroxymethyltransferase compare
Psyr_0377 -2.4 -7.7 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4684 -2.4 -2.3 biotin synthesis protein BioC compare
Psyr_0847 -2.4 -7.0 acetolactate synthase, small subunit compare
Psyr_0827 -2.4 -4.8 pantothenate synthetase compare
Psyr_4407 -2.4 -2.7 phosphoribosylamine--glycine ligase compare
Psyr_2980 -2.4 -5.0 UDP-glucose pyrophosphorylase compare
Psyr_2462 -2.3 -6.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4512 -2.3 -6.2 putative phage-related protein compare
Psyr_0531 -2.3 -2.2 LmbE-like protein compare
Psyr_4140 -2.3 -3.9 Protein of unknown function DUF140 compare
Psyr_0378 -2.2 -8.7 Glycosyl transferase, family 2 compare
Psyr_0976 -2.2 -5.0 Malate:quinone-oxidoreductase compare
Psyr_4262 -2.2 -1.8 lipoprotein, putative compare
Psyr_0846 -2.2 -10.7 acetolactate synthase, large subunit compare
Psyr_4894 -2.2 -6.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0099 -2.2 -3.2 Conserved hypothetical protein compare
Psyr_1614 -2.1 -3.9 lipid A biosynthesis acyltransferase compare
Psyr_0831 -2.1 -2.8 Two-component response regulator CbrB compare
Psyr_1140 -2.1 -3.4 Disulfide bond formation protein DsbB compare
Psyr_0454 -2.1 -4.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1544 -2.1 -4.5 SirA-like protein compare
Psyr_1121 -2.1 -2.3 6-phosphogluconolactonase compare
Psyr_0557 -2.1 -4.6 phosphoserine phosphatase compare
Psyr_1373 -2.1 -2.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0951 -2.1 -3.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3179 -2.0 -3.5 DNA translocase FtsK compare
Psyr_0826 -2.0 -5.7 glucose-6-phosphate isomerase compare
Psyr_0576 -2.0 -3.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_2471 -2.0 -3.1 hydroxymethylglutaryl-CoA lyase compare
Psyr_3886 -2.0 -1.9 methionyl-tRNA synthetase compare
Psyr_4362 -1.9 -3.3 Rare lipoprotein A compare
Psyr_1378 -1.9 -3.0 RecA protein compare
Psyr_4408 -1.9 -7.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4897 -1.9 -3.1 imidazoleglycerol-phosphate dehydratase compare
Psyr_1247 -1.9 -2.5 conserved hypothetical protein compare
Psyr_0923 -1.9 -5.2 hypothetical protein compare
Psyr_4158 -1.9 -9.0 conserved hypothetical protein compare
Psyr_1984 -1.9 -3.7 3-isopropylmalate dehydratase, small subunit compare
Psyr_0983 -1.9 -6.8 Protein of unknown function DUF159 compare
Psyr_2461 -1.9 -3.8 Uncharacterized conserved protein UCP030820 compare
Psyr_4687 -1.9 -6.1 biotin synthase compare
Psyr_4686 -1.8 -4.9 8-amino-7-oxononanoate synthase compare
Psyr_0920 -1.8 -13.6 Glycosyl transferase, group 1 compare
Psyr_3805 -1.8 -2.9 hypothetical protein compare
Psyr_0936 -1.8 -10.2 Glycosyl transferase, group 1 compare
Psyr_0919 -1.8 -11.1 Chromosome segregation ATPase-like protein compare
Psyr_5065 -1.8 -6.9 ATP-dependent DNA helicase UvrD compare
Psyr_1983 -1.8 -6.1 3-isopropylmalate dehydratase, large subunit compare
Psyr_0412 -1.8 -9.4 glutamate synthase (NADPH) small subunit compare
Psyr_3013 -1.8 -2.1 magnesium chelatase subunit ChlD compare
Psyr_3008 -1.8 -5.2 Undecaprenyl-diphosphatase compare
Psyr_4133 -1.8 -9.3 histidinol dehydrogenase compare
Psyr_4991 -1.7 -2.0 hypothetical protein compare
Psyr_4940 -1.7 -2.6 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0534 -1.7 -11.5 membrane protein, putative compare
Psyr_4132 -1.7 -7.3 histidinol phosphate aminotransferase apoenzyme compare
Psyr_3637 -1.7 -10.6 Glycosyl transferase, family 4 compare
Psyr_1410 -1.7 -4.3 Holliday junction DNA helicase RuvB compare
Psyr_3692 -1.7 -1.7 conserved hypothetical protein compare
Psyr_4842 -1.7 -6.1 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_4341 -1.7 -5.8 thiamine-phosphate diphosphorylase compare
Psyr_4622 -1.7 -4.2 Nucleotidyl transferase compare
Psyr_1530 -1.7 -3.1 hypothetical protein compare
Psyr_0469 -1.7 -7.9 dihydroxyacid dehydratase compare
Psyr_4627 -1.7 -2.6 dimethyladenosine transferase compare
Psyr_0915 -1.6 -9.1 NAD-dependent epimerase/dehydratase compare
Psyr_0914 -1.6 -9.4 Glycosyl transferase, group 1 compare
Psyr_4623 -1.6 -8.9 Aminoglycoside phosphotransferase compare
Psyr_0916 -1.6 -9.0 GDP-mannose 4,6-dehydratase compare
Psyr_0025 -1.6 -3.8 shikimate dehydrogenase compare
Psyr_4844 -1.6 -7.7 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_0630 -1.6 -5.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_3636 -1.6 -9.0 Polysaccharide biosynthesis protein CapD compare
Psyr_1985 -1.6 -7.8 3-isopropylmalate dehydrogenase compare
Psyr_0947 -1.6 -6.4 TPR repeat protein:TPR repeat protein compare
Psyr_4134 -1.5 -7.0 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4822 -1.5 -2.9 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0201 -1.5 -6.4 ATP-dependent DNA helicase RecG compare
Psyr_4125 -1.5 -3.7 Protein of unknown function DUF1043 compare
Psyr_1748 -1.5 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0167 -1.5 -3.2 hypothetical protein compare
Psyr_1249 -1.5 -4.5 histidyl-tRNA synthetase compare
Psyr_1227 -1.5 -3.2 Queuosine biosynthesis protein compare
Psyr_4161 -1.5 -2.1 Rod shape-determining protein MreD compare
Psyr_0219 -1.5 -7.8 phosphomannomutase compare
Psyr_5072 -1.4 -1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0832 -1.4 -6.6 Two-component sensor kinase CbrA compare
Psyr_3691 -1.4 -6.1 conserved hypothetical protein compare
Psyr_1341 -1.4 -9.7 Protein-P-II uridylyltransferase conserved
Psyr_2779 -1.4 -2.0 Phage minor tail compare
Psyr_4078 -1.4 -8.8 AmpG-related permease compare
Psyr_1751 -1.4 -4.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3555 -1.4 -2.1 aspartate kinase compare
Psyr_1688 -1.4 -2.6 Protein of unknown function DUF1315 compare
Psyr_1914 -1.4 -7.5 transaldolase compare
Psyr_4740 -1.4 -4.1 thiazole-phosphate synthase compare
Psyr_1613 -1.4 -3.5 septum site-determining protein MinC compare
Psyr_1749 -1.4 -5.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3090 -1.3 -3.5 hypothetical protein compare
Psyr_4843 -1.3 -3.8 NUDIX hydrolase compare
Psyr_4567 -1.3 -4.0 Protein of unknown function UPF0075 compare
Psyr_3287 -1.3 -2.5 DNA topoisomerase I compare
Psyr_3281 -1.3 -2.4 Glycoside hydrolase, family 3, N-terminal compare
Psyr_4789 -1.3 -3.0 lipoprotein, putative compare
Psyr_3597 -1.3 -1.3 ABC transporter compare
Psyr_4340 -1.3 -5.5 phosphomethylpyrimidine kinase, putative compare
Psyr_0393 -1.3 -3.2 Protein of unknown function DUF971 compare
Psyr_4128 -1.3 -6.1 sulfate adenylyltransferase subunit 2 compare
Psyr_5062 -1.3 -4.1 transcriptional regulator, LysR family compare
Psyr_4634 -1.3 -1.6 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3202 -1.3 -1.9 NADH dehydrogenase subunit G compare
Psyr_4224 -1.2 -2.3 conserved hypothetical protein compare
Psyr_0402 -1.2 -9.1 Peptidoglycan glycosyltransferase compare
Psyr_2808 -1.2 -2.4 hypothetical protein compare
Psyr_2620 -1.2 -2.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4126 -1.2 -8.2 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_1816 -1.2 -3.0 transcriptional regulator, GntR family compare
Psyr_3174 -1.2 -3.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_3681 -1.2 -1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_4821 -1.2 -4.8 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_1910 -1.2 -4.1 VacJ-like lipoprotein compare
Psyr_1669 -1.2 -6.1 O-succinylhomoserine sulfhydrylase compare
Psyr_3676 -1.2 -3.0 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_5133 -1.1 -3.1 tRNA modification GTPase trmE compare
Psyr_0176 -1.1 -2.3 conserved hypothetical protein compare
Psyr_2823 -1.1 -1.3 hypothetical protein compare
Psyr_4091 -1.1 -3.4 8-oxo-dGTPase compare
Psyr_4463 -1.1 -3.1 Protein of unknown function DUF193 compare
Psyr_0385 -1.1 -2.1 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1108 -1.1 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_4050 -1.1 -1.6 Protein of unknown function DUF479 compare
Psyr_1120 -1.1 -5.5 glucose-6-phosphate 1-dehydrogenase compare
Psyr_2244 -1.1 -1.5 DNA topoisomerase III compare
Psyr_0473 -1.1 -3.9 Methionine biosynthesis MetW compare
Psyr_3199 -1.1 -2.2 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2223 -1.1 -2.1 sarcosine oxidase, delta subunit compare
Psyr_0848 -1.0 -5.7 ketol-acid reductoisomerase compare
Psyr_2285 -1.0 -1.7 Twin-arginine translocation pathway signal compare
Psyr_2248 -1.0 -3.4 Phosphonate-binding periplasmic protein compare
Psyr_1953 -1.0 -1.9 conserved hypothetical protein compare
Psyr_1372 -1.0 -3.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_0528 -1.0 -1.7 Carbamoyltransferase compare
Psyr_3695 -1.0 -6.5 RelA/SpoT protein compare
Psyr_0202 -1.0 -5.4 transcriptional regulator, LysR family compare
Psyr_4116 -1.0 -1.1 Transport-associated protein compare
Psyr_3672 -1.0 -2.4 cobalamin-5'-phosphate synthase compare
Psyr_0184 -1.0 -1.7 Protein of unknown function DUF484 compare
Psyr_1118 -1.0 -2.8 Aldose 1-epimerase compare
Psyr_4203 -1.0 -1.1 SsrA-binding protein compare
Psyr_1251 -1.0 -2.4 quinoprotein compare
Psyr_3280 -1.0 -2.2 methylthioadenosine phosphorylase compare
Psyr_0281 -1.0 -2.7 ABC transporter compare
Psyr_0579 -1.0 -5.9 RNAse R compare
Psyr_2566 -1.0 -2.4 dihydroxyacetone kinase DhaK subunit compare
Psyr_0425 -1.0 -2.3 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_0386 -1.0 -2.1 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0487 -1.0 -1.9 glutathione synthase compare
Psyr_0811 -0.9 -4.2 Integral membrane protein TerC compare
Psyr_4151 -0.9 -0.9 Phosphocarrier HPr protein compare
Psyr_3610 -0.9 -2.4 GAF compare
Psyr_1980 -0.9 -2.9 Heat shock protein Hsp20 compare
Psyr_0475 -0.9 -1.8 Protein of unknown function YGGT compare
Psyr_4838 -0.9 -2.3 transcriptional regulator, MerR family compare
Psyr_4100 -0.9 -3.2 D-alanine--D-alanine ligase compare
Psyr_3193 -0.9 -1.7 Transcription factor jumonji, jmjC compare
Psyr_1966 -0.9 -2.3 Peptidase M19, renal dipeptidase compare
Psyr_4051 -0.9 -1.6 transcriptional regulator, ArsR family compare
Psyr_2612 -0.9 -2.2 syrP protein, putative compare
Psyr_0830 -0.9 -2.8 Poly(A) polymerase compare
Psyr_3020 -0.9 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_1895 -0.9 -1.8 conserved hypothetical protein compare
Psyr_0817 -0.9 -2.7 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2251 -0.9 -1.2 Phosphonate metabolism PhnG compare
Psyr_0533 -0.9 -2.3 conserved hypothetical protein compare
Psyr_1419 -0.9 -1.9 preQ(0) biosynthesis protein QueC compare
Psyr_2557 -0.9 -1.1 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4138 -0.9 -2.8 Toluene tolerance compare
Psyr_0491 -0.9 -2.6 chemotaxis sensory transducer compare


Specific Phenotypes

For 4 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a

For in planta epiphytic across organisms