Experiment set1IT050 for Pseudomonas syringae pv. syringae B728a

Compare to:

Green bean; epiphytic

200 most detrimental genes:

  gene name fitness t score description  
Psyr_1039 +4.3 2.6 FecR protein compare
Psyr_3698 +3.2 8.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4183 +3.1 1.5 protein translocase subunit secG compare
Psyr_2897 +2.5 8.0 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3665 +2.4 1.8 conserved hypothetical protein compare
Psyr_0699 +1.6 1.4 CDS compare
Psyr_0885 +1.5 1.1 conserved hypothetical protein compare
Psyr_3083 +1.5 1.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3446 +1.4 2.8 Surface presentation of antigens (SPOA) protein compare
Psyr_RNA28 +1.4 2.6 tRNA-Val compare
Psyr_3445 +1.4 2.0 Flagellar biosynthesis protein, FliO compare
Psyr_2259 +1.4 1.9 Beta-lactamase-like protein compare
Psyr_3461 +1.4 9.8 Helix-turn-helix, Fis-type compare
Psyr_4393 +1.4 4.1 type II secretion system protein E compare
Psyr_3055 +1.4 1.6 Aminoglycoside phosphotransferase compare
Psyr_2476 +1.4 2.7 Exodeoxyribonuclease III compare
Psyr_3443 +1.4 5.2 Flagellar biosynthesis protein FliQ compare
Psyr_3462 +1.4 3.3 conserved hypothetical protein compare
Psyr_3456 +1.3 9.0 Flagellar motor switch protein FliG conserved
Psyr_2508 +1.3 1.6 transcriptional regulator, IclR family compare
Psyr_2999 +1.3 1.6 LmbE-like protein compare
Psyr_1774 +1.2 2.1 Mg2+ transporter protein, CorA-like protein compare
Psyr_1972 +1.2 3.3 conserved hypothetical protein compare
Psyr_1615 +1.2 1.8 Patatin compare
Psyr_3437 +1.2 9.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_1779 +1.1 2.5 hypothetical protein compare
Psyr_1955 +1.1 1.1 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3596 +1.1 2.2 Selenoprotein W-related protein compare
Psyr_3442 +1.1 7.4 Flagellar biosynthesis protein FliR compare
Psyr_1322 +1.1 2.0 Protein of unknown function DUF72 compare
Psyr_3755 +1.1 1.7 conserved hypothetical protein compare
Psyr_3441 +1.1 9.1 Flagellar biosynthetic protein FlhB compare
Psyr_1312 +1.1 7.8 transcriptional regulator, TetR family conserved
Psyr_1393 +1.1 2.8 conserved hypothetical protein compare
Psyr_2297 +1.0 1.2 glucose 1-dehydrogenase compare
Psyr_0070 +1.0 2.3 hypothetical protein compare
Psyr_3440 +1.0 5.9 Flagellar biosynthesis protein FlhA compare
Psyr_1725 +1.0 1.5 Protein of unknown function DUF204 compare
Psyr_3463 +1.0 3.2 Flagellar protein FliS compare
Psyr_4490 +1.0 1.2 transcriptional regulator, DeoR family compare
Psyr_0444 +1.0 1.2 Malonate decarboxylase delta subunit compare
Psyr_3457 +1.0 5.5 Flagellar FliF M-ring protein compare
Psyr_3447 +1.0 5.1 Flagellar motor switch protein FliM compare
Psyr_0153 +1.0 1.9 conserved hypothetical protein compare
Psyr_3932 +0.9 1.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1309 +0.9 2.1 response regulator receiver modulated diguanylate cyclase compare
Psyr_1374 +0.9 5.1 RNA polymerase, sigma 38 subunit, RpoS compare
Psyr_0231 +0.9 2.4 conserved hypothetical protein compare
Psyr_2822 +0.9 1.3 hypothetical protein compare
Psyr_3454 +0.9 5.7 ATPase FliI/YscN compare
Psyr_3315 +0.9 2.1 conserved hypothetical protein compare
Psyr_4466 +0.9 2.8 Thioredoxin compare
Psyr_3675 +0.9 2.0 adenosylcobinamide kinase compare
Psyr_2717 +0.9 1.3 Antibiotic biosynthesis monooxygenase compare
Psyr_3487 +0.9 5.2 flagellar protein FlgA compare
Psyr_0636 +0.9 2.1 LrgA compare
Psyr_3133 +0.9 1.6 Amidohydrolase 2 compare
Psyr_3305 +0.9 3.8 Glycosyl transferase, group 1 compare
Psyr_3455 +0.9 4.8 Flagellar assembly protein FliH compare
Psyr_2227 +0.8 1.0 conserved hypothetical protein compare
Psyr_1833 +0.8 5.7 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3453 +0.8 4.6 flagellar protein FliJ, putative compare
Psyr_1127 +0.8 1.6 Heavy metal response regulator compare
Psyr_2872 +0.8 1.6 hypothetical protein compare
Psyr_2108 +0.8 2.4 23S rRNA m(2)G-2445 methyltransferase compare
Psyr_5029 +0.8 1.5 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_4085 +0.8 3.0 hypothetical protein compare
Psyr_0791 +0.8 1.4 MOSC compare
Psyr_0212 +0.8 1.8 Conserved hypothetical protein 255 compare
Psyr_2474 +0.8 2.1 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_2344 +0.8 2.3 CDS compare
Psyr_1841 +0.8 2.3 Aminotransferase, class I and II compare
Psyr_2225 +0.8 2.1 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_3706 +0.8 1.5 Protein of unknown function DUF335 compare
Psyr_3667 +0.8 2.1 conserved hypothetical protein compare
Psyr_1900 +0.8 2.9 ApbE-like lipoprotein compare
Psyr_4663 +0.7 1.8 hypothetical protein compare
Psyr_3310 +0.7 2.7 transferase hexapeptide repeat protein compare
Psyr_2414 +0.7 2.3 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 compare
Psyr_0899 +0.7 1.6 Tripartite ATP-independent periplasmic transporter, DctQ component compare
Psyr_2287 +0.7 1.9 outer membrane transport energization protein TonB compare
Psyr_4730 +0.7 1.5 FecR protein compare
Psyr_4710 +0.7 1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4278 +0.7 1.8 regulatory protein, LuxR compare
Psyr_0178 +0.7 2.1 regulator of nucleoside diphosphate kinase compare
Psyr_0085 +0.7 2.4 conserved hypothetical protein compare
Psyr_2839 +0.7 2.3 conserved hypothetical protein compare
Psyr_0694 +0.7 2.6 ABC transporter compare
Psyr_3458 +0.7 1.4 Flagellar hook-basal body complex protein FliE compare
Psyr_3702 +0.7 1.7 Arsenate reductase compare
Psyr_1887 +0.7 2.2 CDS compare
Psyr_0875 +0.7 1.0 outer membrane transport energization protein TonB compare
Psyr_2389 +0.7 1.7 oxidoreductase, molybdopterin-binding subunit, putative compare
Psyr_2376 +0.7 2.1 MltA-interacting MipA compare
Psyr_1317 +0.7 0.7 conserved hypothetical protein compare
Psyr_1570 +0.7 2.7 Copper resistance B precursor compare
Psyr_2350 +0.7 2.2 Protein of unknown function UPF0025 compare
Psyr_2112 +0.7 1.8 Protein with unknown function DUF469 compare
Psyr_1505 +0.7 2.4 Protein of unknown function DUF156 compare
Psyr_3473 +0.7 1.9 Flagellar P-ring protein compare
Psyr_4418 +0.7 1.3 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_2074 +0.7 1.3 ketopantoate reductase compare
Psyr_3837 +0.7 1.6 conserved hypothetical protein compare
Psyr_1197 +0.7 2.4 type III secretion protein HrpE compare
Psyr_2572 +0.7 1.2 ribose-5-phosphate isomerase compare
Psyr_1621 +0.7 2.2 Autoinducer synthesis protein compare
Psyr_0726 +0.7 2.4 ribosomal large subunit pseudouridine synthase D compare
Psyr_3825 +0.7 3.1 transcriptional regulator, LysR family compare
Psyr_2132 +0.6 1.6 shikimate dehydrogenase compare
Psyr_4470 +0.6 1.7 ABC transporter compare
Psyr_3084 +0.6 0.9 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1402 +0.6 1.8 SlyX compare
Psyr_3611 +0.6 1.8 Protein of unknown function DUF815 compare
Psyr_4806 +0.6 1.8 hypothetical protein compare
Psyr_3585 +0.6 1.8 Sua5/YciO/YrdC/YwlC compare
Psyr_5036 +0.6 1.4 Response regulator receiver compare
Psyr_4300 +0.6 1.5 DNA polymerase III, epsilon subunit compare
Psyr_2079 +0.6 1.4 phosphoserine phosphatase / phosphoserine:homoserine phosphotransferase compare
Psyr_1802 +0.6 1.2 transcriptional regulator, AsnC family compare
Psyr_3475 +0.6 2.0 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_1961 +0.6 3.6 TonB-dependent siderophore receptor compare
Psyr_4394 +0.6 4.6 type II secretion system protein compare
Psyr_3662 +0.6 1.9 NAD(P)H dehydrogenase (quinone) compare
Psyr_3474 +0.6 4.5 Flagellar L-ring protein compare
Psyr_0796 +0.6 3.2 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_0417 +0.6 1.9 gluconate permease GntT compare
Psyr_1719 +0.6 1.3 conserved hypothetical protein compare
Psyr_2197 +0.6 1.6 urease, Metallo peptidase, MEROPS family M38 compare
Psyr_2676 +0.6 1.7 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3418 +0.6 2.1 PilT protein, N-terminal compare
Psyr_1698 +0.6 2.8 Glutathionylspermidine synthase compare
Psyr_0076 +0.6 0.9 Xanthine phosphoribosyltransferase compare
Psyr_2292 +0.6 1.3 L-glutaminase compare
Psyr_2789 +0.6 2.2 conserved hypothetical protein compare
Psyr_1998 +0.6 1.2 lipoprotein, putative compare
Psyr_3118 +0.6 1.6 transcriptional regulator, GntR family compare
Psyr_0403 +0.6 3.3 Type IV pilus assembly protein PilM compare
Psyr_3512 +0.6 2.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2904 +0.6 1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0441 +0.6 1.4 conserved hypothetical protein compare
Psyr_1658 +0.6 2.3 lipoprotein, putative compare
Psyr_4992 +0.6 2.9 YD repeat protein compare
Psyr_3402 +0.6 1.3 Aldehyde dehydrogenase compare
Psyr_0406 +0.6 1.8 Pilus assembly protein, PilQ compare
Psyr_1263 +0.6 5.1 ATPase compare
Psyr_4479 +0.6 1.6 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
Psyr_3563 +0.6 2.8 arginine succinyltransferase compare
Psyr_2524 +0.6 1.4 conserved hypothetical protein compare
Psyr_4155 +0.6 1.1 Protein of unknown function DUF615 compare
Psyr_4027 +0.6 3.3 conserved hypothetical protein compare
Psyr_0485 +0.6 1.9 Protein of unknown function DUF179 compare
Psyr_4367 +0.6 1.9 Iojap-related protein compare
Psyr_4317 +0.6 2.6 Probable taurine catabolism dioxygenase-like protein compare
Psyr_3595 +0.5 2.2 Metallophosphoesterase compare
Psyr_2279 +0.5 2.3 conserved hypothetical protein compare
Psyr_4328 +0.5 2.5 Protein of unknown function DUF633 compare
Psyr_2850 +0.5 2.0 hypothetical protein compare
Psyr_3189 +0.5 2.2 NUDIX hydrolase compare
Psyr_1483 +0.5 1.0 hypothetical protein compare
Psyr_2935 +0.5 1.5 conserved hypothetical protein compare
Psyr_1021 +0.5 1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_2428 +0.5 1.3 GCN5-related N-acetyltransferase compare
Psyr_0603 +0.5 1.0 N-acylglucosamine 2-epimerase compare
Psyr_3526 +0.5 1.9 transcriptional regulator, LysR family compare
Psyr_2809 +0.5 0.8 hypothetical protein compare
Psyr_4404 +0.5 0.9 tRNA-U20-dihydrouridine synthase compare
Psyr_2668 +0.5 1.2 Helix-turn-helix, Fis-type compare
Psyr_1670 +0.5 1.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_2201 +0.5 0.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_1839 +0.5 1.8 Benzoate membrane transport protein compare
Psyr_2974 +0.5 1.7 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
Psyr_0276 +0.5 1.0 zinc uptake regulation protein, putative compare
Psyr_1061 +0.5 2.3 alginate biosynthesis protein Alg44 compare
Psyr_2266 +0.5 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5096 +0.5 1.4 hypothetical protein compare
Psyr_3048 +0.5 1.1 transcriptional regulator, LysR family compare
Psyr_2973 +0.5 0.8 Glyoxalase I compare
Psyr_1389 +0.5 0.9 Protein of unknown function DUF1456 compare
Psyr_0939 +0.5 2.1 CDS compare
Psyr_1123 +0.5 1.4 conserved hypothetical protein compare
Psyr_1056 +0.5 1.9 Poly(beta-D-mannuronate) lyase compare
Psyr_3882 +0.5 1.1 conserved hypothetical protein compare
Psyr_3304 +0.5 3.2 Lipopolysaccharide biosynthesis compare
Psyr_1480 +0.5 1.7 conserved hypothetical protein compare
Psyr_0785 +0.5 1.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_0975 +0.5 2.1 homocysteine S-methyltransferase compare
Psyr_0863 +0.5 1.2 PhnA protein compare
Psyr_3852 +0.5 1.4 lipoprotein SlyB, putative compare
Psyr_4810 +0.5 1.8 sodium/proton antiporter, CPA1 family compare
Psyr_2496 +0.5 2.8 lipopolysaccharide core biosynthesis domain protein compare
Psyr_3707 +0.5 1.5 Sodium:dicarboxylate symporter compare
Psyr_3779 +0.5 1.4 GCN5-related N-acetyltransferase compare
Psyr_4395 +0.5 2.0 type II secretion system protein compare
Psyr_1485 +0.5 1.8 hypothetical protein compare
Psyr_2584 +0.5 1.8 IucA/IucC compare
Psyr_2699 +0.5 2.0 conserved hypothetical protein compare
Psyr_1560 +0.5 2.2 gas vesicle protein, putative compare
Psyr_0148 +0.5 1.6 hypothetical protein compare
Psyr_3478 +0.5 3.7 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE compare
Psyr_3116 +0.5 1.7 transcriptional regulator, CdaR family compare


Specific Phenotypes

For 4 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a

For in planta epiphytic across organisms