Experiment set1IT049 for Pseudomonas syringae pv. syringae B728a

Compare to:

Green bean; epiphytic

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.0 -3.4 anthranilate synthase, component II compare
Psyr_4609 -3.9 -12.9 anthranilate synthase, component I compare
Psyr_4580 -3.9 -4.5 anthranilate phosphoribosyltransferase compare
Psyr_0532 -3.7 -2.6 conserved hypothetical protein compare
Psyr_0529 -3.6 -3.5 Glycosyl transferase, group 1 compare
Psyr_1663 -3.6 -5.9 phosphoribosylanthranilate isomerase compare
Psyr_1668 -3.5 -7.0 amidophosphoribosyltransferase compare
Psyr_0951 -3.5 -4.2 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3281 -3.4 -3.9 Glycoside hydrolase, family 3, N-terminal compare
Psyr_0033 -3.2 -3.8 tryptophan synthase, alpha chain compare
Psyr_0704 -3.2 -9.8 glutamate 5-kinase compare
Psyr_4684 -3.1 -2.1 biotin synthesis protein BioC compare
Psyr_4852 -3.0 -7.9 D-3-phosphoglycerate dehydrogenase compare
Psyr_4369 -3.0 -6.8 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1408 -3.0 -4.4 Holliday junction endonuclease RuvC compare
Psyr_2462 -2.9 -7.4 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1269 -2.9 -4.3 phosphoribosylformylglycinamidine synthase compare
Psyr_2471 -2.8 -3.8 hydroxymethylglutaryl-CoA lyase compare
Psyr_2980 -2.8 -5.2 UDP-glucose pyrophosphorylase compare
Psyr_0917 -2.8 -7.8 ABC-2 compare
Psyr_0827 -2.8 -5.5 pantothenate synthetase compare
Psyr_0531 -2.8 -1.9 LmbE-like protein compare
Psyr_4683 -2.7 -4.1 dethiobiotin synthase compare
Psyr_0034 -2.7 -4.5 tryptophan synthase, beta chain compare
Psyr_3805 -2.7 -4.0 hypothetical protein compare
Psyr_0411 -2.7 -17.4 glutamate synthase (NADPH) large subunit compare
Psyr_4362 -2.7 -3.5 Rare lipoprotein A compare
Psyr_0099 -2.6 -2.8 Conserved hypothetical protein compare
Psyr_4894 -2.6 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0918 -2.6 -10.9 ABC transporter compare
Psyr_4897 -2.6 -4.5 imidazoleglycerol-phosphate dehydratase compare
Psyr_0454 -2.6 -3.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0378 -2.5 -9.2 Glycosyl transferase, family 2 compare
Psyr_0377 -2.5 -8.5 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4407 -2.5 -2.9 phosphoribosylamine--glycine ligase compare
Psyr_4896 -2.5 -6.8 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_2461 -2.5 -5.0 Uncharacterized conserved protein UCP030820 compare
Psyr_0846 -2.5 -11.7 acetolactate synthase, large subunit compare
Psyr_4887 -2.3 -11.3 Peptidase S41A, C-terminal protease compare
Psyr_3597 -2.3 -1.8 ABC transporter compare
Psyr_4408 -2.2 -8.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0557 -2.2 -4.6 phosphoserine phosphatase compare
Psyr_0826 -2.2 -6.4 glucose-6-phosphate isomerase compare
Psyr_4270 -2.2 -7.9 serine hydroxymethyltransferase compare
Psyr_0444 -2.2 -1.3 Malonate decarboxylase delta subunit compare
Psyr_4687 -2.2 -6.9 biotin synthase compare
Psyr_4512 -2.2 -6.5 putative phage-related protein compare
Psyr_4991 -2.2 -2.0 hypothetical protein compare
Psyr_1378 -2.1 -3.0 RecA protein compare
Psyr_4822 -2.1 -3.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4686 -2.1 -5.5 8-amino-7-oxononanoate synthase compare
Psyr_0983 -2.0 -7.6 Protein of unknown function DUF159 compare
Psyr_4133 -2.0 -11.3 histidinol dehydrogenase compare
Psyr_1410 -1.9 -4.3 Holliday junction DNA helicase RuvB compare
Psyr_3673 -1.9 -2.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3179 -1.9 -3.8 DNA translocase FtsK compare
Psyr_3008 -1.9 -5.7 Undecaprenyl-diphosphatase compare
Psyr_1614 -1.9 -4.0 lipid A biosynthesis acyltransferase compare
Psyr_0412 -1.9 -10.3 glutamate synthase (NADPH) small subunit compare
Psyr_5065 -1.9 -7.1 ATP-dependent DNA helicase UvrD compare
Psyr_1373 -1.9 -2.1 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3202 -1.9 -2.4 NADH dehydrogenase subunit G compare
Psyr_4893 -1.8 -1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4132 -1.8 -9.2 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0847 -1.8 -6.7 acetolactate synthase, small subunit compare
Psyr_3886 -1.8 -2.0 methionyl-tRNA synthetase compare
Psyr_4158 -1.8 -9.0 conserved hypothetical protein compare
Psyr_0385 -1.8 -3.3 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1613 -1.8 -4.4 septum site-determining protein MinC compare
Psyr_4134 -1.8 -7.4 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_3555 -1.7 -2.5 aspartate kinase compare
Psyr_1544 -1.7 -4.2 SirA-like protein compare
Psyr_0920 -1.7 -12.6 Glycosyl transferase, group 1 compare
Psyr_4140 -1.7 -3.1 Protein of unknown function DUF140 compare
Psyr_0936 -1.7 -9.8 Glycosyl transferase, group 1 compare
Psyr_3681 -1.7 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_0976 -1.7 -4.6 Malate:quinone-oxidoreductase compare
Psyr_0914 -1.7 -9.6 Glycosyl transferase, group 1 compare
Psyr_0534 -1.7 -11.6 membrane protein, putative compare
Psyr_0630 -1.7 -7.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_0916 -1.7 -9.7 GDP-mannose 4,6-dehydratase compare
Psyr_4844 -1.7 -8.4 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_4842 -1.7 -6.1 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_3691 -1.7 -6.8 conserved hypothetical protein compare
Psyr_3637 -1.7 -10.1 Glycosyl transferase, family 4 compare
Psyr_0915 -1.6 -9.0 NAD-dependent epimerase/dehydratase compare
Psyr_1985 -1.6 -8.4 3-isopropylmalate dehydrogenase compare
Psyr_0978 -1.6 -6.7 lipoprotein, putative compare
Psyr_0528 -1.6 -2.1 Carbamoyltransferase compare
Psyr_1984 -1.6 -2.9 3-isopropylmalate dehydratase, small subunit compare
Psyr_0487 -1.6 -2.9 glutathione synthase compare
Psyr_3636 -1.6 -10.1 Polysaccharide biosynthesis protein CapD compare
Psyr_0947 -1.6 -6.4 TPR repeat protein:TPR repeat protein compare
Psyr_0469 -1.5 -8.2 dihydroxyacid dehydratase compare
Psyr_3193 -1.5 -2.7 Transcription factor jumonji, jmjC compare
Psyr_3199 -1.5 -3.3 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1341 -1.5 -10.2 Protein-P-II uridylyltransferase conserved
Psyr_4622 -1.5 -4.3 Nucleotidyl transferase compare
Psyr_0919 -1.5 -10.0 Chromosome segregation ATPase-like protein compare
Psyr_0201 -1.5 -5.9 ATP-dependent DNA helicase RecG compare
Psyr_4623 -1.5 -8.8 Aminoglycoside phosphotransferase compare
Psyr_1747 -1.5 -4.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0822 -1.5 -1.9 1-phosphofructokinase compare
Psyr_3174 -1.5 -4.1 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_0923 -1.4 -4.7 hypothetical protein compare
Psyr_1748 -1.4 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3466 -1.4 -2.4 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_1401 -1.4 -5.2 Histidine triad (HIT) protein compare
Psyr_1247 -1.4 -2.2 conserved hypothetical protein compare
Psyr_4895 -1.4 -2.9 conserved hypothetical protein compare
Psyr_1419 -1.3 -2.6 preQ(0) biosynthesis protein QueC compare
Psyr_3287 -1.3 -3.2 DNA topoisomerase I compare
Psyr_0817 -1.3 -2.8 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_4161 -1.3 -2.2 Rod shape-determining protein MreD compare
Psyr_4078 -1.3 -8.6 AmpG-related permease compare
Psyr_4128 -1.3 -6.6 sulfate adenylyltransferase subunit 2 compare
Psyr_0533 -1.3 -4.4 conserved hypothetical protein compare
Psyr_1616 -1.3 -1.9 Rieske [2Fe-2S] region compare
Psyr_0831 -1.3 -2.1 Two-component response regulator CbrB compare
Psyr_1910 -1.3 -4.6 VacJ-like lipoprotein compare
Psyr_1983 -1.3 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psyr_4341 -1.3 -5.1 thiamine-phosphate diphosphorylase compare
Psyr_0811 -1.3 -5.9 Integral membrane protein TerC compare
Psyr_0202 -1.3 -6.1 transcriptional regulator, LysR family compare
Psyr_2244 -1.2 -2.1 DNA topoisomerase III compare
Psyr_0848 -1.2 -6.3 ketol-acid reductoisomerase compare
Psyr_0616 -1.2 -2.5 conserved domain protein compare
Psyr_1108 -1.2 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_0219 -1.2 -7.1 phosphomannomutase compare
Psyr_0294 -1.2 -4.4 Exopolyphosphatase compare
Psyr_3208 -1.2 -2.0 NADH dehydrogenase subunit M compare
Psyr_4141 -1.2 -3.5 ABC transporter compare
Psyr_0402 -1.2 -9.0 Peptidoglycan glycosyltransferase compare
Psyr_3004 -1.2 -3.4 transcriptional regulator, LysR family compare
Psyr_1914 -1.1 -6.4 transaldolase compare
Psyr_1250 -1.1 -2.0 conserved hypothetical protein compare
Psyr_1751 -1.1 -4.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4567 -1.1 -3.5 Protein of unknown function UPF0075 compare
Psyr_5135 -1.1 -1.4 Protein of unknown function DUF37 compare
Psyr_1251 -1.1 -2.7 quinoprotein compare
Psyr_1418 -1.1 -2.7 Radical SAM compare
Psyr_1120 -1.1 -5.8 glucose-6-phosphate 1-dehydrogenase compare
Psyr_4831 -1.1 -2.6 ABC transporter compare
Psyr_0576 -1.1 -2.1 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_2779 -1.1 -2.2 Phage minor tail compare
Psyr_0356 -1.1 -1.5 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_3672 -1.1 -3.1 cobalamin-5'-phosphate synthase compare
Psyr_1816 -1.1 -2.7 transcriptional regulator, GntR family compare
Psyr_5078 -1.1 -2.5 conserved hypothetical protein compare
Psyr_4091 -1.1 -3.3 8-oxo-dGTPase compare
Psyr_3433 -1.1 -3.1 Protein-glutamate methylesterase compare
Psyr_0025 -1.1 -3.1 shikimate dehydrogenase compare
Psyr_0835 -1.1 -3.6 transcriptional regulator, TraR/DksA family compare
Psyr_4627 -1.0 -2.1 dimethyladenosine transferase compare
Psyr_3808 -1.0 -1.4 hypothetical protein compare
Psyr_0832 -1.0 -5.3 Two-component sensor kinase CbrA compare
Psyr_0014 -1.0 -2.6 lipid A biosynthesis acyltransferase compare
Psyr_0473 -1.0 -3.8 Methionine biosynthesis MetW compare
Psyr_0491 -1.0 -3.1 chemotaxis sensory transducer compare
Psyr_1056 -1.0 -2.8 Poly(beta-D-mannuronate) lyase compare
Psyr_1669 -1.0 -5.7 O-succinylhomoserine sulfhydrylase compare
Psyr_3644 -1.0 -2.7 prephenate dehydrogenase compare
Psyr_4821 -1.0 -3.5 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_4125 -1.0 -2.9 Protein of unknown function DUF1043 compare
Psyr_1749 -1.0 -4.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_1198 -1.0 -1.3 type III secretion protein HrpF compare
Psyr_1140 -1.0 -2.5 Disulfide bond formation protein DsbB compare
Psyr_2150 -1.0 -2.3 protein of unknown function DUF903 compare
Psyr_4843 -1.0 -2.5 NUDIX hydrolase compare
Psyr_4093 -1.0 -3.0 glutamate N-acetyltransferase compare
Psyr_3554 -1.0 -1.6 Carbon storage regulator compare
Psyr_1227 -1.0 -2.5 Queuosine biosynthesis protein compare
Psyr_1447 -1.0 -1.7 conserved hypothetical protein compare
Psyr_2588 -1.0 -2.3 HpcH/HpaI aldolase compare
Psyr_4416 -1.0 -2.5 precorrin-8X methylmutase compare
Psyr_0037 -0.9 -2.1 Protein of unknown function DUF1458 compare
Psyr_0695 -0.9 -3.6 extracellular solute-binding protein, family 3 compare
Psyr_2088 -0.9 -1.3 2-methylaconitate cis-trans isomerase compare
Psyr_4126 -0.9 -6.6 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_4463 -0.9 -2.8 Protein of unknown function DUF193 compare
Psyr_0268 -0.9 -1.7 DSBA oxidoreductase compare
Psyr_0579 -0.9 -5.7 RNAse R compare
Psyr_3695 -0.9 -6.1 RelA/SpoT protein compare
Psyr_0635 -0.9 -1.8 MaoC-like dehydratase compare
Psyr_2620 -0.9 -2.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4203 -0.9 -1.1 SsrA-binding protein compare
Psyr_1530 -0.9 -2.2 hypothetical protein compare
Psyr_3545 -0.9 -2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_1687 -0.9 -2.8 Rhomboid-like protein compare
Psyr_4029 -0.9 -3.3 pyruvate kinase compare
Psyr_1651 -0.9 -4.6 Protein of unknown function DUF175 compare
Psyr_4136 -0.9 -1.1 BolA-like protein compare
Psyr_1121 -0.9 -1.4 6-phosphogluconolactonase compare
Psyr_2330 -0.9 -2.9 FAD dependent oxidoreductase compare
Psyr_4634 -0.9 -0.9 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3954 -0.9 -3.2 GTP-binding protein LepA compare
Psyr_3324 -0.9 -3.0 transcriptional regulator, TetR family compare
Psyr_4116 -0.9 -1.2 Transport-associated protein compare
Psyr_4340 -0.9 -3.5 phosphomethylpyrimidine kinase, putative compare
Psyr_4240 -0.9 -4.0 Binding-protein-dependent transport systems inner membrane component compare


Specific Phenotypes

For 4 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a

For in planta epiphytic across organisms