Experiment set1IT049 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Cisplatin 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14640 +1.0 2.4 UDP-glucose 4-epimerase compare
CA265_RS17315 +0.9 1.8 hypothetical protein compare
CA265_RS20650 +0.8 1.5 hypothetical protein compare
CA265_RS18550 +0.8 1.1 N-acetyltransferase compare
CA265_RS19740 +0.7 3.3 gliding motility lipoprotein GldD compare
CA265_RS13485 +0.7 2.8 hypothetical protein compare
CA265_RS17090 +0.7 2.6 DUF2132 domain-containing protein compare
CA265_RS12280 +0.7 2.7 hypothetical protein compare
CA265_RS15035 +0.6 1.9 prevent-host-death protein compare
CA265_RS17290 +0.6 1.0 tRNA-Lys compare
CA265_RS17115 +0.6 2.2 arsenate reductase compare
CA265_RS19140 +0.6 1.6 tRNA-Ile compare
CA265_RS00490 +0.5 2.8 hypothetical protein compare
CA265_RS16130 +0.5 1.9 cell division protein FtsX compare
CA265_RS25160 +0.5 2.4 glycosyl transferase family 2 compare
CA265_RS09885 +0.5 2.6 hypothetical protein compare
CA265_RS04425 +0.5 2.9 histidine phosphotransferase compare
CA265_RS07470 +0.5 1.7 hypothetical protein compare
CA265_RS21320 +0.5 1.2 hypothetical protein compare
CA265_RS20350 +0.5 2.6 gliding motility lipoprotein GldH compare
CA265_RS11010 +0.5 2.9 hypothetical protein compare
CA265_RS12780 +0.5 1.3 hypothetical protein compare
CA265_RS19525 +0.5 2.4 cyanophycinase compare
CA265_RS03530 +0.5 2.3 hypothetical protein compare
CA265_RS01055 +0.5 2.0 hypothetical protein compare
CA265_RS17085 +0.5 3.0 hypothetical protein compare
CA265_RS25435 +0.5 1.5 hypothetical protein compare
CA265_RS10385 +0.5 1.5 hypothetical protein compare
CA265_RS14325 +0.4 1.7 hypothetical protein compare
CA265_RS13790 +0.4 1.9 L-rhamnose mutarotase compare
CA265_RS03235 +0.4 1.6 hypothetical protein compare
CA265_RS19685 +0.4 2.2 hypothetical protein compare
CA265_RS03155 +0.4 3.0 hypothetical protein compare
CA265_RS10840 +0.4 3.3 TIGR02453 family protein compare
CA265_RS02795 +0.4 1.0 hypothetical protein compare
CA265_RS19465 +0.4 1.5 protein tyrosine phosphatase compare
CA265_RS19810 +0.4 0.9 hypothetical protein compare
CA265_RS09690 +0.4 2.1 hypothetical protein compare
CA265_RS22945 +0.4 1.2 hypothetical protein compare
CA265_RS01225 +0.4 1.3 hypothetical protein compare
CA265_RS23515 +0.4 1.8 hypothetical protein compare
CA265_RS19940 +0.4 3.6 hypothetical protein compare
CA265_RS04885 +0.4 0.8 tRNA-Gly compare
CA265_RS24620 +0.4 2.7 response regulator compare
CA265_RS02345 +0.4 1.8 hypothetical protein compare
CA265_RS22800 +0.4 2.9 glycosyl transferase compare
CA265_RS23950 +0.4 1.5 ribonuclease HII compare
CA265_RS21760 +0.4 1.9 hypothetical protein compare
CA265_RS06110 +0.4 1.7 hypothetical protein compare
CA265_RS21330 +0.4 2.5 TetR family transcriptional regulator compare
CA265_RS05940 +0.4 1.6 hypothetical protein compare
CA265_RS16565 +0.4 2.1 hypothetical protein compare
CA265_RS00195 +0.4 2.0 hypothetical protein compare
CA265_RS18775 +0.4 1.9 hypothetical protein compare
CA265_RS02295 +0.4 1.9 metal-binding protein compare
CA265_RS03260 +0.4 2.7 multidrug ABC transporter ATP-binding protein compare
CA265_RS22535 +0.4 1.3 hypothetical protein compare
CA265_RS01320 +0.4 1.2 hypothetical protein compare
CA265_RS08765 +0.4 1.8 response regulator compare
CA265_RS14125 +0.4 1.2 hypothetical protein compare
CA265_RS23145 +0.4 1.1 hypothetical protein compare
CA265_RS19535 +0.4 2.7 hypothetical protein compare
CA265_RS03400 +0.4 1.8 hypothetical protein compare
CA265_RS01975 +0.4 1.1 cell division protein compare
CA265_RS03450 +0.4 2.1 hypothetical protein compare
CA265_RS20315 +0.4 3.3 hypothetical protein compare
CA265_RS06515 +0.4 1.6 hypothetical protein compare
CA265_RS18225 +0.4 2.2 DNA-binding response regulator compare
CA265_RS05735 +0.4 1.4 hypothetical protein compare
CA265_RS23835 +0.4 1.5 hypothetical protein compare
CA265_RS07655 +0.4 1.7 hypothetical protein compare
CA265_RS24355 +0.4 1.4 transcriptional regulator compare
CA265_RS12960 +0.4 2.0 DUF4440 domain-containing protein compare
CA265_RS25040 +0.4 1.3 excinuclease ABC subunit C compare
CA265_RS04805 +0.4 2.3 XynC protein compare
CA265_RS18455 +0.4 1.7 nucleotidyltransferase compare
CA265_RS11495 +0.4 2.5 hypothetical protein compare
CA265_RS14785 +0.4 2.2 pyrroloquinoline quinone biosynthesis protein PqqB compare
CA265_RS21835 +0.4 0.7 hypothetical protein compare
CA265_RS12850 +0.4 1.3 3-oxoacyl-ACP synthase compare
CA265_RS08060 +0.4 1.0 hypothetical protein compare
CA265_RS16725 +0.4 2.0 hypothetical protein compare
CA265_RS10845 +0.4 2.0 hypothetical protein compare
CA265_RS18255 +0.4 1.0 hypothetical protein compare
CA265_RS04075 +0.4 2.6 decarboxylase compare
CA265_RS23525 +0.4 2.5 hypothetical protein compare
CA265_RS19965 +0.4 1.2 hypothetical protein compare
CA265_RS20320 +0.3 3.2 hypothetical protein compare
CA265_RS15280 +0.3 2.4 glycine C-acetyltransferase compare
CA265_RS06365 +0.3 2.6 hypothetical protein compare
CA265_RS22805 +0.3 2.1 glycosyl transferase compare
CA265_RS22290 +0.3 1.4 NADPH quinone reductase MdaB compare
CA265_RS14615 +0.3 1.4 hypothetical protein compare
CA265_RS20775 +0.3 1.4 hypothetical protein compare
CA265_RS03275 +0.3 1.6 hypothetical protein compare
CA265_RS18570 +0.3 1.3 hypothetical protein compare
CA265_RS04130 +0.3 1.3 hypothetical protein compare
CA265_RS01150 +0.3 1.5 hypothetical protein compare
CA265_RS23915 +0.3 2.0 G-D-S-L family lipolytic protein compare
CA265_RS18855 +0.3 1.3 hypothetical protein compare
CA265_RS06930 +0.3 1.7 hypothetical protein compare
CA265_RS07785 +0.3 1.8 hypothetical protein compare
CA265_RS15690 +0.3 2.1 NADPH-dependent FMN reductase compare
CA265_RS23890 +0.3 0.8 hypothetical protein compare
CA265_RS19620 +0.3 1.6 hypothetical protein compare
CA265_RS17720 +0.3 2.7 hypothetical protein compare
CA265_RS15445 +0.3 2.3 hypothetical protein compare
CA265_RS22260 +0.3 1.7 hypothetical protein compare
CA265_RS25305 +0.3 1.5 hypothetical protein compare
CA265_RS08915 +0.3 1.9 hypothetical protein compare
CA265_RS13710 +0.3 1.4 hypothetical protein compare
CA265_RS15830 +0.3 1.7 3-isopropylmalate dehydratase large subunit compare
CA265_RS15165 +0.3 1.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS20205 +0.3 1.7 very short patch repair endonuclease compare
CA265_RS17420 +0.3 1.6 glyoxalase compare
CA265_RS02245 +0.3 1.5 hypothetical protein compare
CA265_RS01200 +0.3 1.6 hypothetical protein compare
CA265_RS13500 +0.3 1.1 hypothetical protein compare
CA265_RS17145 +0.3 1.4 malate:quinone oxidoreductase compare
CA265_RS18810 +0.3 1.5 thioredoxin family protein compare
CA265_RS21010 +0.3 1.6 hypothetical protein compare
CA265_RS22750 +0.3 1.4 hypothetical protein compare
CA265_RS14395 +0.3 2.4 hypothetical protein compare
CA265_RS15795 +0.3 2.1 dihydroxy-acid dehydratase compare
CA265_RS06315 +0.3 2.1 uridine kinase compare
CA265_RS10390 +0.3 1.3 hypothetical protein compare
CA265_RS21080 +0.3 1.5 hypothetical protein compare
CA265_RS14570 +0.3 1.6 aminoacyl-tRNA hydrolase compare
CA265_RS18380 +0.3 0.9 ribose 5-phosphate isomerase B compare
CA265_RS06440 +0.3 0.9 hypothetical protein compare
CA265_RS03385 +0.3 1.4 hypothetical protein compare
CA265_RS18875 +0.3 2.1 hypothetical protein compare
CA265_RS15640 +0.3 2.4 sugar kinase compare
CA265_RS18975 +0.3 1.5 glycine cleavage system protein H compare
CA265_RS07590 +0.3 1.4 hypothetical protein compare
CA265_RS19945 +0.3 1.6 hypothetical protein compare
CA265_RS20975 +0.3 1.3 hypothetical protein compare
CA265_RS02655 +0.3 1.1 hypothetical protein compare
CA265_RS00480 +0.3 1.7 (2Fe-2S)-binding protein compare
CA265_RS03360 +0.3 1.6 hypothetical protein compare
CA265_RS19705 +0.3 1.2 tRNA-binding protein compare
CA265_RS07760 +0.3 2.0 hypothetical protein compare
CA265_RS21445 +0.3 1.7 exodeoxyribonuclease III compare
CA265_RS02925 +0.3 1.8 sulfatase compare
CA265_RS04585 +0.3 1.4 GNAT family N-acetyltransferase compare
CA265_RS12745 +0.3 1.3 NUDIX hydrolase compare
CA265_RS03125 +0.3 0.5 hypothetical protein compare
CA265_RS25300 +0.3 2.2 ABC transporter permease compare
CA265_RS18530 +0.3 0.7 aspartate aminotransferase family protein compare
CA265_RS23705 +0.3 1.5 esterase compare
CA265_RS09335 +0.3 1.7 DUF4442 domain-containing protein compare
CA265_RS19910 +0.3 1.2 GDSL family lipase compare
CA265_RS02110 +0.3 1.2 hypothetical protein compare
CA265_RS02425 +0.3 0.9 GTP cyclohydrolase compare
CA265_RS20390 +0.3 2.0 hypothetical protein compare
CA265_RS15175 +0.3 1.8 thioredoxin-dependent thiol peroxidase compare
CA265_RS02615 +0.3 1.4 hypothetical protein compare
CA265_RS09035 +0.3 1.7 anti-anti-sigma factor compare
CA265_RS19095 +0.3 1.7 DNA-binding transcriptional regulator compare
CA265_RS05845 +0.3 1.7 hypothetical protein compare
CA265_RS09725 +0.3 2.5 tolB protein precursor compare
CA265_RS03495 +0.3 0.8 cytochrome c biogenesis protein compare
CA265_RS19050 +0.3 0.8 acylphosphatase compare
CA265_RS15085 +0.3 1.5 hypothetical protein compare
CA265_RS19960 +0.3 1.4 hypothetical protein compare
CA265_RS19970 +0.3 1.5 cyclic nucleotide-binding protein compare
CA265_RS20195 +0.3 0.6 hypothetical protein compare
CA265_RS24385 +0.3 0.8 GNAT family N-acetyltransferase compare
CA265_RS25375 +0.3 1.3 hypothetical protein compare
CA265_RS10380 +0.3 1.7 RNA polymerase subunit sigma-70 compare
CA265_RS07775 +0.3 1.3 hypothetical protein compare
CA265_RS13940 +0.3 1.4 hypothetical protein compare
CA265_RS14435 +0.3 1.6 GNAT family N-acetyltransferase compare
CA265_RS22180 +0.3 1.7 hypothetical protein compare
CA265_RS12645 +0.3 1.4 molybdopterin converting factor compare
CA265_RS04030 +0.3 1.8 alpha-galactosidase compare
CA265_RS02945 +0.3 0.8 hypothetical protein compare
CA265_RS23815 +0.3 1.3 hypothetical protein compare
CA265_RS16970 +0.3 2.0 hypothetical protein compare
CA265_RS16270 +0.3 1.5 hypothetical protein compare
CA265_RS18725 +0.3 1.3 short-chain dehydrogenase compare
CA265_RS21030 +0.3 1.2 hypothetical protein compare
CA265_RS04315 +0.3 1.8 hypothetical protein compare
CA265_RS00850 +0.3 1.6 hypothetical protein compare
CA265_RS07535 +0.3 1.0 ATPase compare
CA265_RS01165 +0.3 0.9 hypothetical protein compare
CA265_RS23640 +0.3 2.1 hypothetical protein compare
CA265_RS03070 +0.3 1.2 sec-independent protein translocase TatC compare
CA265_RS24815 +0.3 1.1 hypothetical protein compare
CA265_RS09050 +0.3 1.2 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS19605 +0.3 1.3 serine hydrolase compare
CA265_RS21620 +0.3 1.3 hybrid sensor histidine kinase/response regulator compare
CA265_RS14875 +0.3 1.6 radical SAM protein compare
CA265_RS02085 +0.3 1.4 hypothetical protein compare
CA265_RS22355 +0.3 1.4 translation initiation factor compare
CA265_RS22035 +0.3 0.8 hypothetical protein compare
CA265_RS04465 +0.3 1.4 PspC family transcriptional regulator compare
CA265_RS18525 +0.3 1.6 four helix bundle protein compare
CA265_RS05165 +0.3 1.7 hypothetical protein compare
CA265_RS06585 +0.3 1.6 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment

For stress Cisplatin in Pedobacter sp. GW460-11-11-14-LB5

For stress Cisplatin across organisms