Experiment set1IT049 for Paraburkholderia graminis OAS925

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_003158 -4.9 -2.3 phosphoserine aminotransferase compare
ABIE53_000838 -3.9 -3.8 starvation-inducible DNA-binding protein compare
ABIE53_000830 -3.7 -3.6 preprotein translocase subunit YajC compare
ABIE53_000403 -3.6 -2.5 rod shape-determining protein MreD compare
ABIE53_000414 -3.5 -10.7 homoserine O-acetyltransferase compare
ABIE53_003017 -3.5 -9.0 trehalose 6-phosphate phosphatase compare
ABIE53_001277 -3.4 -7.8 glucose/mannose transport system substrate-binding protein compare
ABIE53_003305 -3.3 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003517 -3.3 -2.3 phosphogluconate dehydratase compare
ABIE53_000667 -3.3 -5.9 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_005662 -3.2 -0.9 DNA replication protein DnaC compare
ABIE53_003157 -3.2 -4.3 chorismate mutase/prephenate dehydratase compare
ABIE53_001273 -3.1 -6.9 glucokinase compare
ABIE53_005782 -3.0 -1.1 hypothetical protein compare
ABIE53_003735 -3.0 -2.1 hypothetical protein compare
ABIE53_001279 -3.0 -8.4 glucose/mannose transport system permease protein compare
ABIE53_005863 -3.0 -9.7 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_002762 -3.0 -2.0 enolase compare
ABIE53_002857 -3.0 -10.3 phosphomethylpyrimidine synthase compare
ABIE53_004801 -3.0 -4.5 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_001314 -2.9 -4.9 phosphoenolpyruvate carboxylase compare
ABIE53_001275 -2.9 -1.2 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_001278 -2.9 -4.9 glucose/mannose transport system permease protein compare
ABIE53_004804 -2.9 -2.9 3-isopropylmalate dehydrogenase compare
ABIE53_000768 -2.9 -5.3 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_003306 -2.9 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_000663 -2.9 -9.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_003536 -2.9 -3.9 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_004803 -2.8 -3.3 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_004811 -2.8 -4.7 tryptophan synthase alpha chain compare
ABIE53_002116 -2.8 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003749 -2.7 -3.3 diaminopimelate decarboxylase compare
ABIE53_004817 -2.7 -6.3 O-succinylhomoserine sulfhydrylase compare
ABIE53_000423 -2.7 -3.3 DnaK suppressor protein compare
ABIE53_003428 -2.7 -2.6 phosphoglycerate kinase compare
ABIE53_000061 -2.7 -4.1 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003733 -2.7 -2.6 glutamate synthase domain-containing protein 3 compare
ABIE53_003734 -2.6 -7.0 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_003973 -2.5 -1.8 3-oxoadipate enol-lactonase compare
ABIE53_005516 -2.5 -1.8 beta-RFAP synthase compare
ABIE53_001228 -2.5 -5.0 phosphoadenosine phosphosulfate reductase compare
ABIE53_001226 -2.5 -5.3 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_001276 -2.4 -8.1 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_001229 -2.4 -6.1 sulfate adenylyltransferase subunit 2 compare
ABIE53_001232 -2.4 -1.3 sirohydrochlorin cobaltochelatase compare
ABIE53_003159 -2.3 -4.2 phosphoserine aminotransferase compare
ABIE53_003588 -2.3 -2.8 glutamate 5-kinase compare
ABIE53_004630 -2.3 -0.7 hypothetical protein compare
ABIE53_004548 -2.3 -1.1 4-oxalocrotonate tautomerase compare
ABIE53_003531 -2.3 -1.3 Fur family ferric uptake transcriptional regulator compare
ABIE53_000262 -2.3 -1.5 chromosome partitioning protein compare
ABIE53_001227 -2.2 -1.3 uncharacterized protein (DUF934 family) compare
ABIE53_000567 -2.2 -1.6 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_001644 -2.2 -1.5 aromatic-amino-acid transaminase compare
ABIE53_003815 -2.2 -1.5 tRNA-Arg compare
ABIE53_003640 -2.2 -4.4 anthranilate synthase component 1 compare
ABIE53_003298 -2.1 -3.9 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_001757 -2.1 -1.7 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_002402 -2.1 -1.8 low affinity Fe/Cu permease compare
ABIE53_001994 -2.1 -6.9 LysR family cys regulon transcriptional activator compare
ABIE53_001588 -2.0 -3.6 triosephosphate isomerase compare
ABIE53_002232 -2.0 -1.9 tellurite resistance protein compare
ABIE53_001280 -2.0 -2.8 multiple sugar transport system ATP-binding protein compare
ABIE53_000840 -2.0 -3.3 pyrroline-5-carboxylate reductase compare
ABIE53_005141 -2.0 -1.4 putative spermidine/putrescine transport system permease protein compare
ABIE53_000666 -1.9 -3.2 preprotein translocase subunit SecB compare
ABIE53_001230 -1.9 -7.6 sulfate adenylyltransferase subunit 1 compare
ABIE53_002846 -1.9 -2.8 uncharacterized membrane protein YtjA (UPF0391 family) compare
ABIE53_000841 -1.8 -6.1 pyridoxal phosphate enzyme (YggS family) compare
ABIE53_006380 -1.8 -1.6 hypothetical protein compare
ABIE53_005566 -1.8 -3.2 FMN reductase compare
ABIE53_005547 -1.8 -0.7 putative porin compare
ABIE53_002117 -1.8 -4.2 ATP-dependent Lon protease compare
ABIE53_001846 -1.8 -4.4 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_006409 -1.8 -1.4 hypothetical protein compare
ABIE53_004602 -1.8 -1.0 hypothetical protein compare
ABIE53_005281 -1.8 -2.2 cytochrome c oxidase subunit 2 compare
ABIE53_002138 -1.7 -5.0 glucose-6-phosphate isomerase compare
ABIE53_005223 -1.7 -1.1 4-hydroxy-2-oxoheptanedioate aldolase compare
ABIE53_005412 -1.7 -1.7 type I restriction-modification system DNA methylase subunit compare
ABIE53_001231 -1.7 -7.1 uroporphyrin-III C-methyltransferase compare
ABIE53_001135 -1.7 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_001225 -1.7 -4.5 LysR family cys regulon transcriptional activator compare
ABIE53_002804 -1.7 -4.6 two-component system nitrogen regulation response regulator GlnG compare
ABIE53_000063 -1.7 -2.9 adenosylhomocysteinase compare
ABIE53_004435 -1.7 -1.4 hypothetical protein compare
ABIE53_000706 -1.6 -2.1 large subunit ribosomal protein L25 compare
ABIE53_004514 -1.6 -1.8 glutamine transport system ATP-binding protein compare
ABIE53_001490 -1.6 -1.8 uncharacterized protein (DUF1330 family) compare
ABIE53_001667 -1.6 -2.8 hypothetical protein compare
ABIE53_001866 -1.6 -3.0 ribose/xylose/arabinose/galactoside ABC-type transport system permease subunit compare
ABIE53_000413 -1.6 -3.5 methionine biosynthesis protein MetW compare
ABIE53_002077 -1.5 -1.0 phosphoserine phosphatase compare
ABIE53_001538 -1.5 -5.2 ribonuclease G compare
ABIE53_005752 -1.5 -3.9 DNA-binding PadR family transcriptional regulator compare
ABIE53_000858 -1.5 -7.7 heat-inducible transcriptional repressor compare
ABIE53_002605 -1.5 -2.0 polar amino acid transport system substrate-binding protein compare
ABIE53_006196 -1.5 -2.0 lipoprotein NlpD compare
ABIE53_006365 -1.5 -1.3 hypothetical protein compare
ABIE53_005236 -1.5 -0.8 DNA-binding MarR family transcriptional regulator compare
ABIE53_001257 -1.4 -1.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ABIE53_004031 -1.4 -1.3 DNA-binding transcriptional LysR family regulator compare
ABIE53_002066 -1.4 -5.9 acetoacetyl-CoA reductase compare
ABIE53_002703 -1.4 -0.7 aspartate kinase compare
ABIE53_000883 -1.4 -1.0 colicin import membrane protein compare
ABIE53_000833 -1.4 -3.1 ATP-dependent DNA helicase RecG compare
ABIE53_000620 -1.4 -3.0 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_005529 -1.4 -2.3 putative transcriptional regulator YheO compare
ABIE53_005264 -1.4 -1.5 hemerythrin superfamily protein compare
ABIE53_003483 -1.4 -6.0 magnesium and cobalt transporter compare
ABIE53_000465 -1.4 -6.7 cation diffusion facilitator family transporter compare
ABIE53_002794 -1.4 -1.9 PAS domain S-box-containing protein compare
ABIE53_002788 -1.4 -4.6 IclR family KDG regulon transcriptional repressor compare
ABIE53_006282 -1.3 -2.4 DNA-binding HxlR family transcriptional regulator compare
ABIE53_001991 -1.3 -3.7 sulfate transport system permease protein compare
ABIE53_003162 -1.3 -1.8 OOP family OmpA-OmpF porin compare
ABIE53_003586 -1.3 -5.1 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_001416 -1.3 -4.2 transaldolase compare
ABIE53_004618 -1.3 -1.5 pimeloyl-ACP methyl ester carboxylesterase compare
ABIE53_001434 -1.3 -2.1 hypothetical protein compare
ABIE53_003210 -1.3 -0.9 acyl carrier protein compare
ABIE53_002761 -1.3 -2.8 cell division protein FtsB compare
ABIE53_000776 -1.3 -1.5 putative FmdB family regulatory protein compare
ABIE53_005051 -1.3 -0.8 hypothetical protein compare
ABIE53_002034 -1.3 -2.5 uncharacterized protein YidB (DUF937 family) compare
ABIE53_004152 -1.3 -0.7 hypothetical protein compare
ABIE53_005044 -1.3 -1.4 putative AcnD-accessory protein PrpF compare
ABIE53_000435 -1.3 -2.3 hypothetical protein compare
ABIE53_006550 -1.3 -1.5 malonate decarboxylase beta subunit compare
ABIE53_001031 -1.3 -1.9 two-component system sensor histidine kinase QseC compare
ABIE53_002572 -1.3 -1.0 hyperosmotically inducible protein compare
ABIE53_002947 -1.3 -0.7 simple sugar transport system ATP-binding protein compare
ABIE53_004023 -1.2 -1.4 hypothetical protein compare
ABIE53_004395 -1.2 -1.2 hypothetical protein compare
ABIE53_005390 -1.2 -1.1 hypothetical protein compare
ABIE53_002733 -1.2 -1.3 uncharacterized protein YjeT (DUF2065 family) compare
ABIE53_005185 -1.2 -0.9 DNA-binding transcriptional LysR family regulator compare
ABIE53_000367 -1.2 -1.3 NAD-dependent SIR2 family protein deacetylase compare
ABIE53_004910 -1.2 -1.0 hypothetical protein compare
ABIE53_004232 -1.2 -1.7 osmotically inducible protein OsmC compare
ABIE53_005307 -1.2 -1.2 catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme compare
ABIE53_002782 -1.2 -3.0 Rrf2 family iron-sulfur cluster assembly transcriptional regulator compare
ABIE53_003444 -1.2 -2.7 succinyl-CoA synthetase alpha subunit compare
ABIE53_005230 -1.2 -1.2 homoprotocatechuate degradation regulator HpaR compare
ABIE53_001897 -1.2 -1.5 uncharacterized protein YciI compare
ABIE53_001152 -1.2 -7.5 bifunctional enzyme CysN/CysC compare
ABIE53_005733 -1.2 -2.3 malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase compare
ABIE53_005086 -1.2 -1.8 protein-tyrosine-phosphatase compare
ABIE53_002593 -1.2 -2.3 SfnB family sulfur acquisition oxidoreductase compare
ABIE53_004508 -1.2 -1.8 molybdate transport repressor ModE-like protein compare
ABIE53_004033 -1.2 -1.3 uncharacterized protein YndB with AHSA1/START domain compare
ABIE53_002455 -1.2 -2.8 DNA-binding MarR family transcriptional regulator compare
ABIE53_002306 -1.2 -1.1 hypothetical protein compare
ABIE53_002585 -1.1 -2.2 heme-degrading monooxygenase HmoA compare
ABIE53_000782 -1.1 -5.1 AcrR family transcriptional regulator compare
ABIE53_004594 -1.1 -1.2 hypothetical protein compare
ABIE53_002805 -1.1 -5.0 two-component system nitrogen regulation sensor histidine kinase GlnL compare
ABIE53_003931 -1.1 -2.5 hypothetical protein compare
ABIE53_005693 -1.1 -3.2 L-rhamnose 1-dehydrogenase compare
ABIE53_000313 -1.1 -7.9 glutamate--cysteine ligase compare
ABIE53_003940 -1.1 -1.1 hypothetical protein compare
ABIE53_003980 -1.1 -2.1 nucleoside-diphosphate-sugar epimerase compare
ABIE53_005700 -1.1 -3.4 rhamnose transport system substrate-binding protein compare
ABIE53_005275 -1.1 -1.7 GNAT superfamily N-acetyltransferase compare
ABIE53_001990 -1.1 -6.1 sulfate/thiosulfate-binding protein compare
ABIE53_003287 -1.1 -4.9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_002010 -1.1 -1.6 putative phosphate transport protein (TIGR00153 family) compare
ABIE53_001318 -1.1 -1.3 hypothetical protein compare
ABIE53_000282 -1.1 -6.1 two-component system OmpR family response regulator compare
ABIE53_002975 -1.1 -2.6 lipoprotein YgeR compare
ABIE53_005329 -1.1 -2.6 4-oxalmesaconate hydratase compare
ABIE53_000860 -1.1 -1.4 ribosome-associated heat shock protein Hsp15 compare
ABIE53_000569 -1.1 -2.6 glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily II) compare
ABIE53_005241 -1.1 -1.9 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_005042 -1.1 -1.8 2-methylcitrate synthase compare
ABIE53_006299 -1.0 -1.1 hypothetical protein compare
ABIE53_005142 -1.0 -0.6 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_002202 -1.0 -1.7 glc operon protein GlcG compare
ABIE53_001983 -1.0 -1.8 hypothetical protein compare
ABIE53_005647 -1.0 -1.7 xanthine/CO dehydrogenase XdhC/CoxF family maturation factor compare
ABIE53_004384 -1.0 -1.0 pyrroloquinoline quinone biosynthesis protein D compare
ABIE53_004191 -1.0 -2.0 DNA-binding NarL/FixJ family response regulator compare
ABIE53_002296 -1.0 -2.1 hypothetical protein compare
ABIE53_005821 -1.0 -0.5 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_004067 -1.0 -1.2 fructose transport system ATP-binding protein compare
ABIE53_002195 -1.0 -3.0 hypothetical protein compare
ABIE53_003494 -1.0 -1.7 Holliday junction DNA helicase RuvA compare
ABIE53_005975 -1.0 -2.0 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
ABIE53_006248 -1.0 -0.6 urea carboxylase-associated protein 2 compare
ABIE53_005554 -1.0 -0.5 AcrR family transcriptional regulator compare
ABIE53_000243 -1.0 -3.5 delta 1-pyrroline-5-carboxylate dehydrogenase compare
ABIE53_004896 -1.0 -3.1 hypothetical protein compare
ABIE53_005342 -1.0 -1.0 cytochrome o ubiquinol oxidase subunit 3 compare
ABIE53_003495 -1.0 -1.7 Holliday junction DNA helicase RuvB compare
ABIE53_001848 -1.0 -0.9 putative 3-demethylubiquinone-9 3-methyltransferase (glyoxalase superfamily) compare
ABIE53_003923 -1.0 -1.4 protein phosphatase compare
ABIE53_001948 -1.0 -2.7 ElaA protein compare
ABIE53_000237 -1.0 -1.9 glycine cleavage system H protein compare
ABIE53_006322 -0.9 -1.3 6-phosphogluconolactonase compare
ABIE53_006501 -0.9 -1.8 TRAP-type C4-dicarboxylate transport system permease small subunit compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Paraburkholderia graminis OAS925

For carbon source D-Glucose across organisms