Experiment set1IT049 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-ribonic acid lithium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05920 +2.4 13.4 transcriptional regulator, LacI family compare
H281DRAFT_05561 +2.1 12.1 transcriptional regulator, TetR family compare
H281DRAFT_05214 +1.5 4.4 transcriptional regulator, LacI family compare
H281DRAFT_03314 +1.1 1.9 hypothetical protein compare
H281DRAFT_05122 +1.1 5.3 host factor-I protein compare
H281DRAFT_00819 +1.1 1.7 competence protein ComEA compare
H281DRAFT_02136 +1.1 1.8 hypothetical protein compare
H281DRAFT_00504 +1.0 5.2 hypothetical protein compare
H281DRAFT_06483 +1.0 2.5 succinylglutamate desuccinylase compare
H281DRAFT_03278 +1.0 1.8 Threonine dehydrogenase compare
H281DRAFT_03795 +1.0 3.1 hypothetical protein compare
H281DRAFT_05116 +0.9 5.0 cell division protein ZapE compare
H281DRAFT_01229 +0.9 2.2 Sugar phosphate permease compare
H281DRAFT_05298 +0.9 1.4 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_03775 +0.9 1.4 protein of unknown function (DUF4399) compare
H281DRAFT_04773 +0.9 3.5 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_03324 +0.9 2.0 Low affinity Fe/Cu permease compare
H281DRAFT_04869 +0.9 1.8 imidazolonepropionase compare
H281DRAFT_01159 +0.9 2.2 2-deoxy-D-gluconate 3-dehydrogenase compare
H281DRAFT_06070 +0.8 3.4 FimV C-terminal domain-containing protein compare
H281DRAFT_00728 +0.8 3.3 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_02568 +0.8 1.9 Methyl-accepting chemotaxis protein compare
H281DRAFT_03256 +0.8 2.4 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_04986 +0.8 3.1 protein ImuB compare
H281DRAFT_03867 +0.8 3.0 4-hydroxyphenylpyruvate dioxygenase compare
H281DRAFT_02564 +0.8 2.3 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_02940 +0.8 1.6 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_04270 +0.8 4.5 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_05915 +0.8 1.7 hypothetical protein compare
H281DRAFT_04226 +0.8 1.4 hypothetical protein compare
H281DRAFT_05919 +0.8 4.0 dihydroxy-acid dehydratase compare
H281DRAFT_02658 +0.8 2.0 carbonic anhydrase compare
H281DRAFT_03497 +0.8 2.1 transcriptional regulator, DeoR family compare
H281DRAFT_03473 +0.7 3.7 hypothetical protein compare
H281DRAFT_02624 +0.7 2.4 4-carboxymuconolactone decarboxylase compare
H281DRAFT_03296 +0.7 1.8 hypothetical protein compare
H281DRAFT_05764 +0.7 2.1 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_01493 +0.7 1.9 aspartate carbamoyltransferase compare
H281DRAFT_06157 +0.7 1.5 hypothetical protein compare
H281DRAFT_01514 +0.7 1.4 ribose 1,5-bisphosphokinase compare
H281DRAFT_02695 +0.7 2.0 transcriptional regulator, HxlR family compare
H281DRAFT_00253 +0.7 2.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06285 +0.7 1.6 3-dehydroquinate dehydratase compare
H281DRAFT_02743 +0.7 1.5 protein of unknown function (DUF4148) compare
H281DRAFT_01160 +0.7 3.4 transcriptional regulator, IclR family compare
H281DRAFT_03198 +0.7 3.7 flagellar transcriptional activator FlhC compare
H281DRAFT_04876 +0.7 1.7 hypothetical protein compare
H281DRAFT_03292 +0.7 1.4 Mn-containing catalase compare
H281DRAFT_04056 +0.7 4.7 CDP-4-dehydro-6-deoxyglucose reductase compare
H281DRAFT_05776 +0.7 2.5 flagellar biosynthetic protein FliP compare
H281DRAFT_06445 +0.7 1.4 Molybdopterin synthase catalytic subunit compare
H281DRAFT_00240 +0.7 5.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_02375 +0.7 3.5 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_05070 +0.7 2.8 camphor resistance protein CrcB compare
H281DRAFT_05775 +0.7 3.9 flagellar biosynthetic protein FliQ compare
H281DRAFT_02231 +0.7 1.5 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04268 +0.7 5.0 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01069 +0.7 1.6 Cytosine/adenosine deaminase compare
H281DRAFT_04661 +0.7 2.5 paraquat-inducible protein A compare
H281DRAFT_00487 +0.7 1.2 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_05766 +0.7 1.3 flagellar basal-body rod protein FlgF compare
H281DRAFT_03863 +0.7 1.1 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_02859 +0.7 2.9 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_05754 +0.7 1.4 flagellar biosynthesis protein FlhF compare
H281DRAFT_01919 +0.7 2.7 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_06555 +0.6 1.4 hypothetical protein compare
H281DRAFT_05868 +0.6 3.0 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_05398 +0.6 2.6 hypothetical protein compare
H281DRAFT_04099 +0.6 1.8 citrate synthase compare
H281DRAFT_04089 +0.6 2.7 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_04004 +0.6 3.5 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_01448 +0.6 2.9 high affinity sulphate transporter 1 compare
H281DRAFT_04492 +0.6 4.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04683 +0.6 4.6 glycolate oxidase compare
H281DRAFT_03856 +0.6 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06297 +0.6 1.7 L-arabinose-binding protein compare
H281DRAFT_01632 +0.6 5.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_06576 +0.6 1.5 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_03496 +0.6 1.8 hypothetical protein compare
H281DRAFT_05382 +0.6 1.6 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05480 +0.6 2.1 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_02958 +0.6 1.6 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_03573 +0.6 2.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04536 +0.6 3.0 protein of unknown function (DUF4126) compare
H281DRAFT_01257 +0.6 1.6 Catechol 2,3-dioxygenase compare
H281DRAFT_03226 +0.6 1.1 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03530 +0.6 2.9 L-fuconolactonase compare
H281DRAFT_06473 +0.6 2.0 NTE family protein compare
H281DRAFT_06197 +0.6 1.7 hypothetical protein compare
H281DRAFT_01033 +0.6 1.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01098 +0.6 2.3 hypothetical protein compare
H281DRAFT_03297 +0.6 1.1 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_03831 +0.6 1.8 heat shock protein Hsp20 compare
H281DRAFT_06419 +0.6 1.0 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_02376 +0.6 2.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_00244 +0.6 4.0 trehalose 6-phosphate synthase compare
H281DRAFT_06018 +0.6 4.2 choline monooxygenase compare
H281DRAFT_03820 +0.6 0.9 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_01074 +0.6 2.1 catechol 1,2-dioxygenase compare
H281DRAFT_01246 +0.6 0.9 hypothetical protein compare
H281DRAFT_02571 +0.6 1.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04840 +0.6 3.2 Uncharacterized protein conserved in bacteria compare
H281DRAFT_01827 +0.6 1.2 hypothetical protein compare
H281DRAFT_00733 +0.6 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03531 +0.6 3.1 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_06056 +0.6 3.6 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03144 +0.6 1.7 putative phosphoesterase compare
H281DRAFT_00236 +0.6 3.4 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_02169 +0.6 2.0 hypothetical protein compare
H281DRAFT_02481 +0.6 2.5 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_05998 +0.6 1.6 hypothetical protein compare
H281DRAFT_05649 +0.6 2.4 transcriptional regulator, BolA protein family compare
H281DRAFT_03069 +0.6 0.9 Uncharacterized conserved protein compare
H281DRAFT_03118 +0.6 1.2 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_01192 +0.5 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00777 +0.5 1.6 SOS-response transcriptional repressor, LexA compare
H281DRAFT_03743 +0.5 2.1 hypothetical protein compare
H281DRAFT_02559 +0.5 1.7 hypothetical protein compare
H281DRAFT_05345 +0.5 1.5 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_05870 +0.5 2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05810 +0.5 2.6 Uncharacterized membrane protein compare
H281DRAFT_02736 +0.5 2.0 uncharacterized peroxidase-related enzyme compare
H281DRAFT_03462 +0.5 2.4 membrane protein DedA, SNARE-associated domain compare
H281DRAFT_02668 +0.5 2.7 Xanthine/uracil permease compare
H281DRAFT_05752 +0.5 3.8 flagellar biosynthetic protein FlhB compare
H281DRAFT_01050 +0.5 1.9 maleylacetate reductase compare
H281DRAFT_01665 +0.5 1.0 acetaldehyde dehydrogenase compare
H281DRAFT_03705 +0.5 2.2 transcriptional regulator, GntR family compare
H281DRAFT_02541 +0.5 2.3 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33) compare
H281DRAFT_02514 +0.5 1.9 enoyl-CoA hydratase compare
H281DRAFT_04213 +0.5 1.5 hypothetical protein compare
H281DRAFT_01610 +0.5 1.8 Choline kinase compare
H281DRAFT_02825 +0.5 1.8 hypothetical protein compare
H281DRAFT_01283 +0.5 2.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01409 +0.5 1.5 acetate kinase compare
H281DRAFT_02756 +0.5 1.7 Cupin domain protein compare
H281DRAFT_03207 +0.5 1.4 MFS transporter, DHA2 family, methylenomycin A resistance protein compare
H281DRAFT_03179 +0.5 2.5 4-aminobutyrate aminotransferase apoenzyme compare
H281DRAFT_01489 +0.5 2.2 hypothetical protein compare
H281DRAFT_01240 +0.5 1.2 hypothetical protein compare
H281DRAFT_06069 +0.5 2.2 tRNA pseudouridine38-40 synthase compare
H281DRAFT_05436 +0.5 2.1 Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family compare
H281DRAFT_03499 +0.5 2.5 2-aminoethylphosphonate transport system substrate-binding protein compare
H281DRAFT_01905 +0.5 2.2 hypothetical protein compare
H281DRAFT_03154 +0.5 1.6 two-component system, NarL family, sensor kinase compare
H281DRAFT_00381 +0.5 2.5 dihydropyrimidinase compare
H281DRAFT_03426 +0.5 2.2 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_03815 +0.5 1.9 D-glucarate dehydratase compare
H281DRAFT_02906 +0.5 2.7 transcriptional regulator, GntR family compare
H281DRAFT_01269 +0.5 1.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02232 +0.5 2.9 preQ(0) biosynthesis protein QueC compare
H281DRAFT_03501 +0.5 2.0 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_04775 +0.5 1.9 tyrosine-protein kinase Etk/Wzc compare
H281DRAFT_06543 +0.5 1.7 cytochrome b561 compare
H281DRAFT_06378 +0.5 2.0 D-galactonate transporter compare
H281DRAFT_06253 +0.5 3.4 cell division protein ZapD compare
H281DRAFT_03894 +0.5 2.7 3-methylfumaryl-CoA hydratase compare
H281DRAFT_02123 +0.5 2.2 copper homeostasis protein compare
H281DRAFT_03408 +0.5 1.2 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_01053 +0.5 1.1 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_04369 +0.5 1.6 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_01462 +0.5 1.3 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_00141 +0.5 1.7 alpha-ribazole phosphatase compare
H281DRAFT_04682 +0.5 2.8 glycolate oxidase FAD binding subunit compare
H281DRAFT_05962 +0.5 0.9 RraA famliy compare
H281DRAFT_01612 +0.5 3.1 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_00066 +0.5 1.0 hypothetical protein compare
H281DRAFT_03559 +0.5 1.6 hypothetical protein compare
H281DRAFT_05286 +0.5 0.9 transcriptional regulator, LysR family compare
H281DRAFT_00359 +0.5 1.3 Acyl-CoA dehydrogenase compare
H281DRAFT_03315 +0.5 0.7 HSP20 family protein compare
H281DRAFT_00272 +0.5 1.8 Glyoxalase-like domain-containing protein compare
H281DRAFT_01964 +0.5 1.9 hypothetical protein compare
H281DRAFT_00646 +0.5 2.5 transcriptional regulator, AraC family compare
H281DRAFT_06376 +0.5 1.6 transcriptional regulator, LysR family compare
H281DRAFT_01880 +0.5 1.1 two component transcriptional regulator, LuxR family compare
H281DRAFT_05767 +0.5 2.2 flagellar basal-body rod protein FlgG compare
H281DRAFT_02378 +0.5 3.9 amino acid/amide ABC transporter membrane protein 1, HAAT family compare
H281DRAFT_04228 +0.5 3.0 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_06510 +0.5 1.4 methyl-accepting chemotaxis protein compare
H281DRAFT_01862 +0.5 1.5 Outer membrane protein (porin) compare
H281DRAFT_02484 +0.5 2.3 transcriptional regulator, GntR family compare
H281DRAFT_01932 +0.5 2.6 hypothetical protein compare
H281DRAFT_00167 +0.5 1.6 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_00717 +0.5 0.6 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_02696 +0.5 1.8 glutathione S-transferase compare
H281DRAFT_04131 +0.5 2.3 O-acetylserine/cysteine efflux transporter compare
H281DRAFT_06490 +0.5 0.8 hypothetical protein compare
H281DRAFT_04681 +0.5 3.3 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_03549 +0.5 2.1 reactive intermediate/imine deaminase compare
H281DRAFT_01284 +0.5 1.3 transcriptional regulator, LysR family compare
H281DRAFT_04562 +0.5 1.2 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_03703 +0.5 0.9 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01706 +0.5 1.0 transcriptional regulator, MarR family compare
H281DRAFT_03747 +0.5 2.3 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_05248 +0.5 1.2 hypothetical protein compare
H281DRAFT_04857 +0.5 1.1 hypothetical protein compare
H281DRAFT_02230 +0.5 1.9 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_04893 +0.5 1.3 transcriptional regulator, LysR family compare
H281DRAFT_03100 +0.5 1.5 DNA-binding transcriptional regulator, MarR family compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms