Experiment set1IT048 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00060 -6.2 -15.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00040 -6.2 -8.2 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00050 -6.1 -4.2 AAA family ATPase compare
MMJJ_RS00055 -6.0 -7.2 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08005 -6.0 -13.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06260 -5.8 -5.6 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS07670 -5.7 -18.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07660 -5.7 -7.7 carbonic anhydrase compare
MMJJ_RS00045 -5.7 -11.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS04485 -5.5 -8.4 riboflavin synthase compare
MMJJ_RS07995 -5.5 -5.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00065 -5.5 -13.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00035 -5.4 -17.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00080 -5.4 -13.1 DUF166 domain-containing protein compare
MMJJ_RS07665 -5.3 -25.8 formate dehydrogenase subunit alpha compare
MMJJ_RS00075 -5.2 -9.3 AAA family ATPase compare
MMJJ_RS07650 -5.1 -21.7 formate/nitrite transporter family protein compare
MMJJ_RS05155 -5.1 -4.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS04475 -5.0 -3.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07635 -4.9 -13.8 response regulator transcription factor compare
MMJJ_RS02935 -4.8 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00645 -4.8 -7.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06915 -4.8 -16.3 helix-turn-helix domain-containing protein compare
MMJJ_RS06860 -4.8 -2.3 hypothetical protein compare
MMJJ_RS07655 -4.8 -13.4 hypothetical protein compare
MMJJ_RS08065 -4.6 -1.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS00580 -4.6 -1.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS02055 -4.5 -13.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS08855 -4.5 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07640 -4.5 -22.3 cache domain-containing protein compare
MMJJ_RS05575 -4.4 -2.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08035 -4.4 -7.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS05445 -4.4 -1.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05535 -4.4 -13.0 hypothetical protein compare
MMJJ_RS05190 -4.4 -7.2 gamma carbonic anhydrase family protein compare
MMJJ_RS06725 -4.3 -10.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07380 -4.3 -5.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08080 -4.3 -7.7 TIGR00300 family protein compare
MMJJ_RS00275 -4.3 -1.6 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06510 -4.2 -1.8 LL-diaminopimelate aminotransferase compare
MMJJ_RS03620 -4.2 -2.8 DUF2097 domain-containing protein compare
MMJJ_RS08020 -4.2 -9.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06265 -4.1 -13.1 8-amino-7-oxononanoate synthase compare
MMJJ_RS03115 -4.1 -5.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00070 -4.0 -2.6 CooT family nickel-binding protein compare
MMJJ_RS06375 -4.0 -2.1 UbiX family flavin prenyltransferase compare
MMJJ_RS06270 -4.0 -7.1 dethiobiotin synthase compare
MMJJ_RS06600 -4.0 -2.5 DUF555 domain-containing protein compare
MMJJ_RS04200 -3.9 -5.4 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07980 -3.9 -11.2 biotin synthase BioB compare
MMJJ_RS03895 -3.9 -2.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS06855 -3.9 -1.1 DUF2104 domain-containing protein compare
MMJJ_RS06930 -3.8 -1.6 type II methionyl aminopeptidase compare
MMJJ_RS03500 -3.8 -10.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS06050 -3.8 -11.7 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01750 -3.8 -1.6 ferrous iron transport protein A compare
MMJJ_RS08625 -3.8 -2.6 magnesium/cobalt transporter CorA compare
MMJJ_RS06155 -3.8 -4.8 phosphatidylglycerophosphatase A compare
MMJJ_RS06010 -3.8 -5.2 hypothetical protein compare
MMJJ_RS07720 -3.7 -1.2 UPF0058 family protein compare
MMJJ_RS08155 -3.7 -2.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07425 -3.7 -8.8 MBL fold metallo-hydrolase compare
MMJJ_RS03580 -3.7 -1.8 TIGR00303 family protein compare
MMJJ_RS08840 -3.7 -3.6 calcium/sodium antiporter compare
MMJJ_RS06490 -3.6 -1.6 methanogenesis marker 2 protein compare
MMJJ_RS01935 -3.6 -2.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS02190 -3.6 -17.6 molybdopterin biosynthesis protein compare
MMJJ_RS06240 -3.6 -2.1 dihydropteroate synthase-like protein compare
MMJJ_RS04685 -3.6 -6.0 carbamoyltransferase HypF compare
MMJJ_RS04145 -3.5 -10.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS07245 -3.5 -4.8 amidohydrolase family protein compare
MMJJ_RS02090 -3.5 -2.3 tyramine--L-glutamate ligase compare
MMJJ_RS00125 -3.5 -1.6 KEOPS complex subunit Cgi121 compare
MMJJ_RS04790 -3.5 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05065 -3.5 -3.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06940 -3.5 -9.2 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS06715 -3.5 -10.5 lactaldehyde dehydrogenase compare
MMJJ_RS06220 -3.5 -3.8 polyamine aminopropyltransferase compare
MMJJ_RS04800 -3.5 -4.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03865 -3.5 -1.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS00355 -3.5 -1.6 ribonuclease P protein component 4 compare
MMJJ_RS08535 -3.5 -2.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08095 -3.4 -3.0 cobyric acid synthase CobQ compare
MMJJ_RS09375 -3.4 -1.0 hypothetical protein compare
MMJJ_RS06875 -3.4 -1.3 hypothetical protein compare
MMJJ_RS01960 -3.4 -8.0 glycosyltransferase family 2 protein compare
MMJJ_RS04995 -3.4 -3.8 Tfx family DNA-binding protein compare
MMJJ_RS07725 -3.4 -5.3 DNA primase DnaG compare
MMJJ_RS07160 -3.4 -18.3 M20 family metallo-hydrolase compare
MMJJ_RS05260 -3.4 -4.0 ATP-grasp domain-containing protein compare
MMJJ_RS08500 -3.4 -6.8 L-sulfolactate dehydrogenase compare
MMJJ_RS05995 -3.4 -1.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS02200 -3.3 -8.4 chorismate pyruvate-lyase family protein compare
MMJJ_RS02045 -3.3 -1.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03125 -3.3 -3.6 GMC oxidoreductase compare
MMJJ_RS05770 -3.3 -1.7 flagellar protein D compare
MMJJ_RS05655 -3.3 -2.3 HisA/HisF family protein compare
MMJJ_RS06485 -3.2 -1.6 phosphoglycerate kinase compare
MMJJ_RS00570 -3.2 -0.9 ribonuclease P compare
MMJJ_RS03295 -3.2 -14.0 PHP domain-containing protein compare
MMJJ_RS06635 -3.2 -15.2 4Fe-4S binding protein compare
MMJJ_RS03810 -3.2 -3.1 AIR synthase-related protein compare
MMJJ_RS08000 -3.2 -9.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS03150 -3.2 -5.5 2-phospho-L-lactate transferase compare
MMJJ_RS03660 -3.2 -1.6 DUF447 family protein compare
MMJJ_RS04050 -3.2 -1.3 dihydroneopterin aldolase family protein compare
MMJJ_RS01820 -3.1 -3.8 MJ1244 family protein compare
MMJJ_RS05765 -3.1 -0.8 flagellar protein E compare
MMJJ_RS06180 -3.1 -1.5 tryptophan--tRNA ligase compare
MMJJ_RS00475 -3.1 -1.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04700 -3.1 -5.8 deoxyhypusine synthase compare
MMJJ_RS06015 -3.1 -10.7 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS05070 -3.1 -1.2 DNA primase catalytic subunit PriS compare
MMJJ_RS08320 -3.1 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06040 -3.1 -2.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04980 -3.0 -4.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06700 -3.0 -5.4 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04155 -3.0 -6.0 hypothetical protein compare
MMJJ_RS08795 -3.0 -1.4 phosphoglucosamine mutase compare
MMJJ_RS00370 -3.0 -1.4 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS04595 -3.0 -4.2 hypothetical protein compare
MMJJ_RS04615 -3.0 -3.9 methanogenesis marker 3 protein compare
MMJJ_RS06695 -3.0 -1.4 amidohydrolase compare
MMJJ_RS03200 -3.0 -1.5 uroporphyrinogen-III synthase compare
MMJJ_RS00270 -3.0 -1.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS01600 -3.0 -1.3 radical SAM protein compare
MMJJ_RS04620 -3.0 -2.8 homocitrate synthase family protein compare
MMJJ_RS06020 -3.0 -5.8 hypothetical protein compare
MMJJ_RS07950 -3.0 -1.8 4Fe-4S binding protein compare
MMJJ_RS06025 -3.0 -17.4 4Fe-4S binding protein compare
MMJJ_RS02040 -2.9 -1.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03670 -2.9 -3.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS04150 -2.9 -2.1 DUF5379 domain-containing protein compare
MMJJ_RS03110 -2.9 -2.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS09190 -2.9 -1.2 tryptophan synthase subunit beta compare
MMJJ_RS07470 -2.9 -1.5 50S ribosome-binding GTPase compare
MMJJ_RS08340 -2.9 -4.7 archaeoflavoprotein AfpA compare
MMJJ_RS08330 -2.9 -2.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06625 -2.9 -1.0 pyruvate synthase subunit PorB compare
MMJJ_RS05195 -2.9 -4.2 hypothetical protein compare
MMJJ_RS04975 -2.8 -1.1 glycosyltransferase family 4 protein compare
MMJJ_RS03760 -2.8 -2.0 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS07360 -2.8 -0.8 TIGR00269 family protein compare
MMJJ_RS05540 -2.8 -17.4 LysR family transcriptional regulator compare
MMJJ_RS05490 -2.8 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06185 -2.8 -5.6 cobalamin biosynthesis protein compare
MMJJ_RS08055 -2.8 -6.5 methanogenesis marker 14 protein compare
MMJJ_RS03875 -2.8 -2.6 CBS domain-containing protein compare
MMJJ_RS06110 -2.8 -1.2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06390 -2.8 -0.9 NADPH-dependent F420 reductase compare
MMJJ_RS00935 -2.8 -16.6 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS05720 -2.8 -1.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03655 -2.8 -5.3 replication factor C large subunit compare
MMJJ_RS02920 -2.8 -1.5 30S ribosomal protein S27ae compare
MMJJ_RS03190 -2.8 -1.3 phosphopyruvate hydratase compare
MMJJ_RS01360 -2.8 -1.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS01350 -2.7 -6.3 sodium:proton antiporter compare
MMJJ_RS03230 -2.7 -3.7 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06035 -2.7 -10.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03615 -2.7 -1.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08250 -2.7 -5.2 hydrogenase maturation peptidase HycI compare
MMJJ_RS05930 -2.7 -1.0 cell division protein SepF compare
MMJJ_RS08405 -2.7 -11.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00450 -2.7 -1.6 DUF126 domain-containing protein compare
MMJJ_RS03270 -2.7 -1.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00560 -2.7 -2.7 homoisocitrate dehydrogenase compare
MMJJ_RS08430 -2.6 -5.5 small nuclear ribonucleoprotein compare
MMJJ_RS03920 -2.6 -13.4 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07960 -2.6 -2.2 quinolinate synthase NadA compare
MMJJ_RS07975 -2.6 -9.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS04650 -2.6 -5.3 nitrogenase iron protein compare
MMJJ_RS05780 -2.6 -2.1 flagellin compare
MMJJ_RS06760 -2.6 -2.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS01810 -2.6 -1.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03005 -2.6 -2.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03095 -2.6 -1.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS07190 -2.6 -2.2 RtcB family protein compare
MMJJ_RS03635 -2.6 -3.9 methionine--tRNA ligase compare
MMJJ_RS05950 -2.6 -2.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06805 -2.6 -1.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01830 -2.5 -3.1 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS03900 -2.5 -8.5 phosphosulfolactate synthase compare
MMJJ_RS05415 -2.5 -1.0 hypothetical protein compare
MMJJ_RS06255 -2.5 -5.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06835 -2.5 -8.7 4Fe-4S binding protein compare
MMJJ_RS03065 -2.5 -11.6 CBS domain-containing protein compare
MMJJ_RS03170 -2.5 -6.6 DUF5612 domain-containing protein compare
MMJJ_RS00480 -2.5 -12.2 flippase compare
MMJJ_RS07410 -2.5 -2.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS01415 -2.5 -1.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07155 -2.5 -9.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS01765 -2.5 -9.3 winged helix-turn-helix domain-containing protein compare
MMJJ_RS06000 -2.5 -3.4 cation:proton antiporter subunit C compare
MMJJ_RS05330 -2.5 -1.1 DNA polymerase II large subunit compare
MMJJ_RS06225 -2.5 -0.9 adenosylmethionine decarboxylase compare
MMJJ_RS09175 -2.4 -0.6 anthranilate synthase component I compare
MMJJ_RS06005 -2.4 -7.2 energy conserving hydrogenase EhbF compare
MMJJ_RS06565 -2.4 -8.1 segregation/condensation protein A compare
MMJJ_RS00220 -2.4 -5.5 UPF0058 family protein compare
MMJJ_RS08925 -2.4 -9.3 winged helix-turn-helix transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms