Experiment set1IT048 for Phocaeicola vulgatus CL09T03C04

Compare to:

Polygalacturonic acid 5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS07195 -5.0 -4.4 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS09675 -5.0 -4.5 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS06175 -4.9 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS12780 -4.9 -12.6 M20 family metallo-hydrolase compare
HMPREF1058_RS14545 -4.5 -11.7 2-isopropylmalate synthase compare
HMPREF1058_RS15870 -4.5 -9.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS14770 -4.4 -8.9 prephenate dehydrogenase compare
HMPREF1058_RS11205 -4.3 -2.6 radical SAM protein compare
HMPREF1058_RS15435 -4.3 -10.4 hypothetical protein compare
HMPREF1058_RS08640 -4.2 -3.4 acetylornithine carbamoyltransferase compare
HMPREF1058_RS08855 -4.2 -9.9 arginine repressor compare
HMPREF1058_RS07185 -4.2 -11.7 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS08845 -4.2 -12.0 argininosuccinate synthase compare
HMPREF1058_RS08645 -4.1 -12.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS15880 -4.1 -11.9 histidinol-phosphate transaminase compare
HMPREF1058_RS00560 -4.1 -2.8 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS08830 -4.1 -10.5 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS10080 -4.1 -16.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS07190 -4.0 -5.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS10995 -4.0 -8.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS03000 -4.0 -8.5 IMP dehydrogenase compare
HMPREF1058_RS07670 -4.0 -2.5 HAMP domain-containing histidine kinase compare
HMPREF1058_RS15875 -4.0 -9.9 histidinol dehydrogenase compare
HMPREF1058_RS14725 -3.9 -11.4 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS12115 -3.9 -10.3 acetylglutamate kinase compare
HMPREF1058_RS14730 -3.9 -10.2 threonine synthase compare
HMPREF1058_RS07655 -3.9 -1.6 hypothetical protein compare
HMPREF1058_RS14785 -3.9 -7.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08840 -3.9 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS02170 -3.8 -7.3 hypothetical protein compare
HMPREF1058_RS00700 -3.8 -11.2 DUF4831 family protein compare
HMPREF1058_RS09585 -3.8 -17.7 argininosuccinate lyase compare
HMPREF1058_RS08650 -3.8 -10.5 glutamate 5-kinase compare
HMPREF1058_RS07170 -3.8 -10.1 tryptophan synthase subunit beta compare
HMPREF1058_RS14550 -3.8 -13.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14590 -3.8 -2.6 AraC family transcriptional regulator compare
HMPREF1058_RS08025 -3.8 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14565 -3.8 -13.5 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS10720 -3.7 -2.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS07955 -3.7 -12.6 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS11270 -3.7 -11.4 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS13515 -3.7 -15.7 MFS transporter compare
HMPREF1058_RS16820 -3.7 -9.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS10075 -3.7 -11.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14555 -3.7 -3.1 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS02485 -3.7 -6.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS02220 -3.7 -7.4 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07200 -3.7 -8.8 tryptophan synthase subunit alpha compare
HMPREF1058_RS16815 -3.7 -11.9 dihydroxy-acid dehydratase compare
HMPREF1058_RS15885 -3.6 -7.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS01590 -3.6 -8.7 glucuronate isomerase compare
HMPREF1058_RS09685 -3.6 -14.9 tetratricopeptide repeat protein compare
HMPREF1058_RS17155 -3.6 -2.5 dCMP deaminase family protein compare
HMPREF1058_RS17080 -3.6 -3.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS12490 -3.6 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS13795 -3.5 -13.2 DUF4954 family protein compare
HMPREF1058_RS06195 -3.5 -7.8 diaminopimelate decarboxylase compare
HMPREF1058_RS16835 -3.5 -9.3 ketol-acid reductoisomerase compare
HMPREF1058_RS08295 -3.5 -5.3 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS14795 -3.5 -7.8 prephenate dehydratase compare
HMPREF1058_RS14610 -3.5 -16.2 adenylosuccinate synthase compare
HMPREF1058_RS12105 -3.5 -5.4 shikimate kinase compare
HMPREF1058_RS11380 -3.5 -5.5 DUF4271 domain-containing protein compare
HMPREF1058_RS08850 -3.4 -6.6 N-acetyltransferase compare
HMPREF1058_RS11730 -3.4 -2.1 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS04075 -3.4 -2.3 DUF58 domain-containing protein compare
HMPREF1058_RS09180 -3.4 -6.3 hypothetical protein compare
HMPREF1058_RS16495 -3.4 -4.0 biotin/lipoyl-binding protein compare
HMPREF1058_RS07175 -3.3 -9.9 anthranilate synthase component I family protein compare
HMPREF1058_RS06180 -3.3 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS14720 -3.3 -14.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14790 -3.3 -13.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14490 -3.3 -12.0 S9 family peptidase compare
HMPREF1058_RS17815 -3.2 -5.8 MFS transporter compare
HMPREF1058_RS02405 -3.2 -16.7 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS09750 -3.2 -8.0 glycosyltransferase compare
HMPREF1058_RS16760 -3.2 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS01690 -3.2 -5.7 sugar kinase compare
HMPREF1058_RS11490 -3.1 -4.8 redox-regulated ATPase YchF compare
HMPREF1058_RS00590 -3.1 -3.9 hypothetical protein compare
HMPREF1058_RS14020 -3.1 -9.5 cardiolipin synthase compare
HMPREF1058_RS04300 -3.1 -4.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS07675 -3.1 -10.3 elongation factor G compare
HMPREF1058_RS11890 -3.1 -3.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS01545 -3.1 -4.7 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS08535 -3.0 -2.9 elongation factor P compare
HMPREF1058_RS06310 -3.0 -5.8 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS03800 -3.0 -7.3 serine hydroxymethyltransferase compare
HMPREF1058_RS06340 -3.0 -6.0 electron transport complex subunit RsxC compare
HMPREF1058_RS09185 -3.0 -4.6 DUF4252 domain-containing protein compare
HMPREF1058_RS14200 -3.0 -13.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS12070 -2.9 -4.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS18660 -2.9 -1.2 hypothetical protein compare
HMPREF1058_RS06170 -2.9 -4.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS03085 -2.9 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS02410 -2.9 -18.2 methylmalonyl-CoA mutase compare
HMPREF1058_RS14920 -2.8 -10.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS01700 -2.8 -5.7 altronate dehydratase compare
HMPREF1058_RS01460 -2.8 -2.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS01390 -2.8 -5.1 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS01585 -2.8 -5.5 tagaturonate reductase compare
HMPREF1058_RS01685 -2.8 -3.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS11040 -2.8 -7.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS03190 -2.8 -4.6 V-type ATP synthase subunit D compare
HMPREF1058_RS07330 -2.8 -12.1 efflux RND transporter permease subunit compare
HMPREF1058_RS04070 -2.7 -3.8 hypothetical protein compare
HMPREF1058_RS05805 -2.7 -10.3 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS04045 -2.7 -4.6 tetratricopeptide repeat protein compare
HMPREF1058_RS16505 -2.7 -9.0 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS12505 -2.7 -3.7 RNA polymerase factor sigma-54 compare
HMPREF1058_RS04080 -2.7 -4.1 AAA family ATPase compare
HMPREF1058_RS01575 -2.7 -6.2 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS05780 -2.7 -8.4 PD40 domain-containing protein compare
HMPREF1058_RS03180 -2.7 -7.9 V-type ATP synthase subunit A compare
HMPREF1058_RS16260 -2.7 -5.5 hotdog fold thioesterase compare
HMPREF1058_RS06165 -2.6 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS12705 -2.6 -7.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS07040 -2.6 -13.6 tetratricopeptide repeat protein compare
HMPREF1058_RS03175 -2.6 -3.9 DUF2764 domain-containing protein compare
HMPREF1058_RS02545 -2.6 -10.0 histidine ammonia-lyase compare
HMPREF1058_RS18695 -2.6 -3.1 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS01550 -2.6 -7.4 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS13635 -2.6 -4.6 gliding motility lipoprotein GldH compare
HMPREF1058_RS01560 -2.6 -4.4 ABC transporter ATP-binding protein compare
HMPREF1058_RS06600 -2.6 -4.2 DedA family protein compare
HMPREF1058_RS10955 -2.6 -6.9 phosphatase PAP2 family protein compare
HMPREF1058_RS03185 -2.5 -8.4 V-type ATP synthase subunit B compare
HMPREF1058_RS10970 -2.5 -7.6 ribonuclease R compare
HMPREF1058_RS05145 -2.5 -6.8 ATP-binding protein compare
HMPREF1058_RS20295 -2.5 -2.5 hypothetical protein compare
HMPREF1058_RS07325 -2.5 -7.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS07245 -2.5 -4.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS16510 -2.5 -3.5 methylmalonyl-CoA epimerase compare
HMPREF1058_RS16730 -2.5 -2.9 chorismate synthase compare
HMPREF1058_RS11375 -2.4 -1.4 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS11930 -2.4 -3.7 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS01570 -2.4 -5.2 ABC transporter substrate-binding protein compare
HMPREF1058_RS04025 -2.4 -6.1 hypothetical protein compare
HMPREF1058_RS18265 -2.4 -1.7 aspartate 1-decarboxylase compare
HMPREF1058_RS02535 -2.4 -9.2 imidazolonepropionase compare
HMPREF1058_RS06320 -2.4 -7.2 electron transport complex subunit RsxA compare
HMPREF1058_RS02975 -2.4 -2.6 hypothetical protein compare
HMPREF1058_RS15075 -2.4 -10.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS16255 -2.4 -10.7 isochorismate synthase compare
HMPREF1058_RS04050 -2.4 -3.9 protein BatD compare
HMPREF1058_RS17965 -2.4 -1.3 DUF452 family protein compare
HMPREF1058_RS14215 -2.4 -3.2 (d)CMP kinase compare
HMPREF1058_RS17805 -2.3 -6.8 HAD family hydrolase compare
HMPREF1058_RS02540 -2.3 -5.5 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS04290 -2.3 -6.1 DUF1015 domain-containing protein compare
HMPREF1058_RS12805 -2.3 -8.3 RNA polymerase sigma factor compare
HMPREF1058_RS01745 -2.3 -5.1 PorT family protein compare
HMPREF1058_RS18205 -2.3 -4.9 ferrous iron transport protein B compare
HMPREF1058_RS10840 -2.3 -2.5 hypothetical protein compare
HMPREF1058_RS14835 -2.3 -5.1 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS14005 -2.3 -3.5 3-dehydroquinate synthase compare
HMPREF1058_RS17820 -2.3 -4.8 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS02495 -2.3 -9.5 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS13350 -2.3 -5.0 Trk system potassium transporter TrkA compare
HMPREF1058_RS06325 -2.3 -3.7 electron transport complex subunit E compare
HMPREF1058_RS05140 -2.3 -3.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS15645 -2.3 -5.4 NUDIX hydrolase compare
HMPREF1058_RS11625 -2.2 -13.2 S41 family peptidase compare
HMPREF1058_RS11925 -2.2 -1.9 DUF2975 domain-containing protein compare
HMPREF1058_RS05765 -2.2 -8.7 nucleoside phosphorylase compare
HMPREF1058_RS03195 -2.2 -6.6 V-type ATP synthase subunit I compare
HMPREF1058_RS04295 -2.2 -4.2 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS13730 -2.2 -4.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS15520 -2.2 -3.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS14380 -2.2 -4.5 AAA family ATPase compare
HMPREF1058_RS09745 -2.2 -8.6 glycosyltransferase compare
HMPREF1058_RS09680 -2.2 -3.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS01400 -2.2 -2.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS07960 -2.2 -13.5 response regulator compare
HMPREF1058_RS03200 -2.2 -3.9 V-type ATP synthase subunit K compare
HMPREF1058_RS13910 -2.2 -5.0 nucleoside deaminase compare
HMPREF1058_RS15660 -2.2 -12.1 galactokinase compare
HMPREF1058_RS08875 -2.2 -9.1 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS01270 -2.2 -4.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS01405 -2.2 -6.2 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS01655 -2.2 -6.4 DUF4296 domain-containing protein compare
HMPREF1058_RS08835 -2.2 -6.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15740 -2.1 -2.7 hypothetical protein compare
HMPREF1058_RS14285 -2.1 -2.5 DUF5056 domain-containing protein compare
HMPREF1058_RS01555 -2.1 -3.9 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS01565 -2.1 -6.9 iron ABC transporter permease compare
HMPREF1058_RS03105 -2.1 -2.6 ABC transporter permease compare
HMPREF1058_RS08060 -2.1 -6.0 hypothetical protein compare
HMPREF1058_RS03535 -2.1 -1.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS10290 -2.1 -3.7 hypothetical protein compare
HMPREF1058_RS16845 -2.1 -2.0 SurA N-terminal domain-containing protein compare
HMPREF1058_RS07575 -2.1 -3.1 MCE family protein compare
HMPREF1058_RS16250 -2.1 -8.5 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS00595 -2.1 -4.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS07320 -2.0 -4.9 AraC family transcriptional regulator compare
HMPREF1058_RS20495 -2.0 -5.8 hypothetical protein compare
HMPREF1058_RS15265 -2.0 -3.1 queuosine precursor transporter compare
HMPREF1058_RS03170 -2.0 -4.4 hypothetical protein compare
HMPREF1058_RS01280 -2.0 -4.3 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS01395 -2.0 -5.5 cobyric acid synthase compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source polygalacturonic acid in Phocaeicola vulgatus CL09T03C04

For carbon source polygalacturonic acid across organisms