Experiment set1IT047 for Pseudomonas fluorescens FW300-N2C3

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LB with Nickel (II) chloride hexahydrate 0.625 mM

Group: stress
Media: LB + Nickel (II) chloride hexahydrate (0.625 mM)
Culturing: pseudo5_N2-C3_1_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 4/28/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 894 A3,A4

Specific Phenotypes

For 10 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2C3

For stress Nickel (II) chloride hexahydrate across organisms

SEED Subsystems

Subsystem #Specific
Alginate metabolism 1
Copper homeostasis: copper tolerance 1
CytR regulation 1
Mannose Metabolism 1
Phosphate metabolism 1
Quorum sensing regulation in Pseudomonas 1
cAMP signaling in bacteria 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
poly-β-1,6-N-acetyl-D-glucosamine biosynthesis 4 3 3
D-mannose degradation I 2 1 1
D-mannose degradation II 2 1 1
β-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation 3 2 1
mannitol biosynthesis 3 1 1
GDP-mannose biosynthesis 4 4 1
mannitol degradation II 4 2 1
1,5-anhydrofructose degradation 5 2 1
β-(1,4)-mannan degradation 7 2 1
colanic acid building blocks biosynthesis 11 9 1
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis 14 7 1