Experiment set1IT047 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00040 -6.3 -6.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS07670 -6.1 -15.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00060 -6.1 -15.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS04485 -5.9 -6.9 riboflavin synthase compare
MMJJ_RS00045 -5.9 -11.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00055 -5.9 -8.9 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08005 -5.8 -15.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS05190 -5.8 -6.9 gamma carbonic anhydrase family protein compare
MMJJ_RS00080 -5.6 -13.0 DUF166 domain-containing protein compare
MMJJ_RS06260 -5.6 -5.9 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00035 -5.5 -18.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS07635 -5.5 -11.2 response regulator transcription factor compare
MMJJ_RS07665 -5.5 -27.0 formate dehydrogenase subunit alpha compare
MMJJ_RS07650 -5.4 -20.7 formate/nitrite transporter family protein compare
MMJJ_RS00075 -5.3 -9.4 AAA family ATPase compare
MMJJ_RS00050 -5.3 -10.0 AAA family ATPase compare
MMJJ_RS00065 -5.1 -12.2 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07660 -5.1 -8.2 carbonic anhydrase compare
MMJJ_RS06915 -4.9 -16.9 helix-turn-helix domain-containing protein compare
MMJJ_RS07655 -4.9 -13.1 hypothetical protein compare
MMJJ_RS08065 -4.7 -1.0 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS04200 -4.7 -3.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06725 -4.7 -7.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08855 -4.7 -2.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS08035 -4.6 -6.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07995 -4.6 -6.6 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04475 -4.6 -3.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07380 -4.6 -3.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS00580 -4.6 -1.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS07640 -4.6 -21.7 cache domain-containing protein compare
MMJJ_RS00645 -4.5 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05155 -4.5 -5.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05535 -4.5 -12.8 hypothetical protein compare
MMJJ_RS08080 -4.5 -6.1 TIGR00300 family protein compare
MMJJ_RS07425 -4.4 -11.3 MBL fold metallo-hydrolase compare
MMJJ_RS05445 -4.4 -1.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06270 -4.4 -6.7 dethiobiotin synthase compare
MMJJ_RS06600 -4.4 -2.1 DUF555 domain-containing protein compare
MMJJ_RS06050 -4.3 -12.2 molybdopterin molybdotransferase MoeA compare
MMJJ_RS00275 -4.3 -1.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06265 -4.3 -14.1 8-amino-7-oxononanoate synthase compare
MMJJ_RS06860 -4.3 -2.6 hypothetical protein compare
MMJJ_RS00450 -4.3 -1.3 DUF126 domain-containing protein compare
MMJJ_RS03895 -4.3 -1.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS00070 -4.2 -2.8 CooT family nickel-binding protein compare
MMJJ_RS06510 -4.2 -1.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS04050 -4.2 -1.1 dihydroneopterin aldolase family protein compare
MMJJ_RS03620 -4.2 -2.5 DUF2097 domain-containing protein compare
MMJJ_RS02190 -4.1 -19.8 molybdopterin biosynthesis protein compare
MMJJ_RS08020 -4.1 -9.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS02055 -4.1 -13.4 GTP 3',8-cyclase MoaA compare
MMJJ_RS00220 -4.1 -5.7 UPF0058 family protein compare
MMJJ_RS03500 -4.1 -9.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS02920 -4.1 -1.2 30S ribosomal protein S27ae compare
MMJJ_RS06375 -4.0 -1.9 UbiX family flavin prenyltransferase compare
MMJJ_RS06240 -4.0 -1.5 dihydropteroate synthase-like protein compare
MMJJ_RS06155 -3.9 -4.0 phosphatidylglycerophosphatase A compare
MMJJ_RS03150 -3.9 -2.6 2-phospho-L-lactate transferase compare
MMJJ_RS04800 -3.8 -3.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06930 -3.8 -1.5 type II methionyl aminopeptidase compare
MMJJ_RS04980 -3.8 -3.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07720 -3.8 -1.2 UPF0058 family protein compare
MMJJ_RS07980 -3.8 -11.0 biotin synthase BioB compare
MMJJ_RS01750 -3.8 -1.4 ferrous iron transport protein A compare
MMJJ_RS05065 -3.8 -2.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01935 -3.7 -2.5 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06490 -3.6 -1.5 methanogenesis marker 2 protein compare
MMJJ_RS03055 -3.6 -1.7 hypothetical protein compare
MMJJ_RS05575 -3.6 -3.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08095 -3.6 -2.0 cobyric acid synthase CobQ compare
MMJJ_RS04595 -3.6 -4.2 hypothetical protein compare
MMJJ_RS08625 -3.6 -4.8 magnesium/cobalt transporter CorA compare
MMJJ_RS00125 -3.5 -1.4 KEOPS complex subunit Cgi121 compare
MMJJ_RS02045 -3.5 -1.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04155 -3.5 -4.2 hypothetical protein compare
MMJJ_RS04875 -3.5 -0.8 tRNA-Lys compare
MMJJ_RS06715 -3.5 -10.6 lactaldehyde dehydrogenase compare
MMJJ_RS00475 -3.5 -1.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS02200 -3.5 -7.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS03865 -3.5 -0.9 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06185 -3.5 -4.2 cobalamin biosynthesis protein compare
MMJJ_RS03900 -3.5 -10.7 phosphosulfolactate synthase compare
MMJJ_RS00355 -3.5 -1.4 ribonuclease P protein component 4 compare
MMJJ_RS02935 -3.5 -2.1 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS03670 -3.5 -1.9 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS09375 -3.4 -0.9 hypothetical protein compare
MMJJ_RS07960 -3.4 -2.0 quinolinate synthase NadA compare
MMJJ_RS03200 -3.4 -1.2 uroporphyrinogen-III synthase compare
MMJJ_RS06220 -3.4 -3.9 polyamine aminopropyltransferase compare
MMJJ_RS03810 -3.4 -2.7 AIR synthase-related protein compare
MMJJ_RS03115 -3.4 -5.7 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS07725 -3.4 -3.9 DNA primase DnaG compare
MMJJ_RS00560 -3.4 -1.6 homoisocitrate dehydrogenase compare
MMJJ_RS08250 -3.4 -4.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS03270 -3.4 -1.0 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05770 -3.4 -1.6 flagellar protein D compare
MMJJ_RS05995 -3.4 -1.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS06040 -3.3 -1.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06175 -3.3 -1.1 DUF1743 domain-containing protein compare
MMJJ_RS03125 -3.3 -3.3 GMC oxidoreductase compare
MMJJ_RS06635 -3.3 -15.9 4Fe-4S binding protein compare
MMJJ_RS03110 -3.3 -1.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08500 -3.3 -6.9 L-sulfolactate dehydrogenase compare
MMJJ_RS06940 -3.3 -9.2 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS03295 -3.3 -12.8 PHP domain-containing protein compare
MMJJ_RS03005 -3.3 -1.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07160 -3.3 -17.2 M20 family metallo-hydrolase compare
MMJJ_RS08170 -3.3 -1.7 diaminopimelate decarboxylase compare
MMJJ_RS06485 -3.3 -1.4 phosphoglycerate kinase compare
MMJJ_RS04685 -3.2 -7.1 carbamoyltransferase HypF compare
MMJJ_RS03920 -3.2 -16.0 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00570 -3.2 -0.8 ribonuclease P compare
MMJJ_RS04650 -3.2 -4.7 nitrogenase iron protein compare
MMJJ_RS03875 -3.2 -2.0 CBS domain-containing protein compare
MMJJ_RS07245 -3.2 -4.9 amidohydrolase family protein compare
MMJJ_RS04145 -3.2 -8.5 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS04790 -3.2 -2.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06855 -3.2 -1.1 DUF2104 domain-containing protein compare
MMJJ_RS06015 -3.2 -11.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS06180 -3.2 -1.4 tryptophan--tRNA ligase compare
MMJJ_RS05260 -3.2 -4.1 ATP-grasp domain-containing protein compare
MMJJ_RS08535 -3.1 -2.6 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01810 -3.1 -1.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06565 -3.1 -6.7 segregation/condensation protein A compare
MMJJ_RS05765 -3.1 -0.7 flagellar protein E compare
MMJJ_RS06700 -3.1 -5.0 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05935 -3.1 -1.1 Era-like GTP-binding protein compare
MMJJ_RS01820 -3.1 -4.1 MJ1244 family protein compare
MMJJ_RS04700 -3.1 -5.0 deoxyhypusine synthase compare
MMJJ_RS08320 -3.1 -1.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05070 -3.1 -1.0 DNA primase catalytic subunit PriS compare
MMJJ_RS04995 -3.1 -3.8 Tfx family DNA-binding protein compare
MMJJ_RS00370 -3.0 -1.3 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS02090 -3.0 -3.4 tyramine--L-glutamate ligase compare
MMJJ_RS03580 -3.0 -2.2 TIGR00303 family protein compare
MMJJ_RS07350 -3.0 -2.2 4Fe-4S binding protein compare
MMJJ_RS08330 -3.0 -2.2 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08795 -3.0 -1.2 phosphoglucosamine mutase compare
MMJJ_RS06030 -3.0 -4.3 4Fe-4S binding protein compare
MMJJ_RS04670 -3.0 -6.3 DUF2117 domain-containing protein compare
MMJJ_RS01600 -3.0 -1.2 radical SAM protein compare
MMJJ_RS05780 -3.0 -1.8 flagellin compare
MMJJ_RS05950 -3.0 -1.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00270 -3.0 -1.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06695 -3.0 -1.2 amidohydrolase compare
MMJJ_RS06875 -3.0 -1.4 hypothetical protein compare
MMJJ_RS09190 -3.0 -1.1 tryptophan synthase subunit beta compare
MMJJ_RS05380 -3.0 -0.6 hypothetical protein compare
MMJJ_RS02040 -3.0 -1.3 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06025 -3.0 -16.2 4Fe-4S binding protein compare
MMJJ_RS07950 -3.0 -1.6 4Fe-4S binding protein compare
MMJJ_RS00195 -2.9 -2.0 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS05655 -2.9 -4.7 HisA/HisF family protein compare
MMJJ_RS08155 -2.9 -3.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06035 -2.9 -10.2 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS06625 -2.9 -0.9 pyruvate synthase subunit PorB compare
MMJJ_RS08000 -2.9 -7.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS07410 -2.9 -2.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08850 -2.9 -1.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06805 -2.9 -1.5 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06010 -2.9 -4.7 hypothetical protein compare
MMJJ_RS05540 -2.9 -17.3 LysR family transcriptional regulator compare
MMJJ_RS08840 -2.9 -3.5 calcium/sodium antiporter compare
MMJJ_RS01830 -2.8 -2.8 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS04975 -2.8 -1.0 glycosyltransferase family 4 protein compare
MMJJ_RS05490 -2.8 -1.2 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07360 -2.8 -0.7 TIGR00269 family protein compare
MMJJ_RS06110 -2.8 -1.0 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06020 -2.8 -5.2 hypothetical protein compare
MMJJ_RS00935 -2.8 -13.5 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS03660 -2.8 -2.1 DUF447 family protein compare
MMJJ_RS05195 -2.8 -3.7 hypothetical protein compare
MMJJ_RS04150 -2.8 -1.8 DUF5379 domain-containing protein compare
MMJJ_RS06865 -2.8 -1.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00525 -2.8 -2.2 Dabb family protein compare
MMJJ_RS01360 -2.8 -1.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS08405 -2.8 -12.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03190 -2.7 -1.2 phosphopyruvate hydratase compare
MMJJ_RS08055 -2.7 -6.6 methanogenesis marker 14 protein compare
MMJJ_RS07190 -2.7 -1.5 RtcB family protein compare
MMJJ_RS01350 -2.7 -5.7 sodium:proton antiporter compare
MMJJ_RS01960 -2.7 -7.4 glycosyltransferase family 2 protein compare
MMJJ_RS05930 -2.7 -0.9 cell division protein SepF compare
MMJJ_RS05135 -2.7 -1.0 50S ribosomal protein L18Ae compare
MMJJ_RS03655 -2.6 -4.0 replication factor C large subunit compare
MMJJ_RS05810 -2.6 -4.3 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05360 -2.6 -4.7 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS08335 -2.6 -1.5 ABC transporter ATP-binding protein compare
MMJJ_RS00205 -2.6 -4.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00215 -2.6 -1.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS00210 -2.6 -0.9 DUF530 family protein compare
MMJJ_RS03095 -2.6 -1.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03170 -2.6 -6.4 DUF5612 domain-containing protein compare
MMJJ_RS01405 -2.5 -0.8 proline--tRNA ligase compare
MMJJ_RS06840 -2.5 -1.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06835 -2.5 -8.9 4Fe-4S binding protein compare
MMJJ_RS03760 -2.5 -2.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS02205 -2.5 -9.6 hypothetical protein compare
MMJJ_RS07470 -2.5 -1.2 50S ribosome-binding GTPase compare
MMJJ_RS03615 -2.5 -1.4 cobalt-precorrin-8 methylmutase compare


Specific Phenotypes

For 5 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms