Experiment set1IT047 for Phocaeicola vulgatus CL09T03C04

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Polygalacturonic acid 5 mg/ml carbon source

Group: carbon source
Media: Varel_Bryant_medium + polygalacturonic acid (5 mg/ml)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 12/22/21
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 21 genes in this experiment

For carbon source polygalacturonic acid in Phocaeicola vulgatus CL09T03C04

For carbon source polygalacturonic acid across organisms

SEED Subsystems

Subsystem #Specific
Cobalt-zinc-cadmium resistance 1
Teichoic and lipoteichoic acids biosynthesis 1
p-Aminobenzoyl-Glutamate Utilization 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
Arg/N-end rule pathway (eukaryotic) 14 6 2
poly(glycerol phosphate) wall teichoic acid biosynthesis 11 2 1