Experiment set1IT046 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04005 +2.3 14.0 acetate--CoA ligase family protein compare
MMJJ_RS01855 +2.2 10.3 MBL fold metallo-hydrolase compare
MMJJ_RS07240 +1.9 13.0 MBL fold metallo-hydrolase compare
MMJJ_RS07280 +1.8 9.0 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS07680 +1.6 9.0 glucose-6-phosphate isomerase compare
MMJJ_RS08775 +1.6 9.2 PfkB family carbohydrate kinase compare
MMJJ_RS07030 +1.5 12.0 hypothetical protein compare
MMJJ_RS03835 +1.5 4.0 DUF504 domain-containing protein compare
MMJJ_RS08935 +1.5 0.8 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS09300 +1.4 2.0 hypothetical protein compare
MMJJ_RS06950 +1.4 4.7 4-demethylwyosine synthase TYW1 compare
MMJJ_RS08785 +1.4 5.5 D-sedoheptulose 7-phosphate isomerase compare
MMJJ_RS08325 +1.3 1.4 glycosyltransferase family 2 protein compare
MMJJ_RS08490 +1.3 3.8 rubrerythrin family protein compare
MMJJ_RS07750 +1.2 2.4 class III signal peptide-containing protein compare
MMJJ_RS04375 +1.1 2.5 hypothetical protein compare
MMJJ_RS05750 +1.1 5.0 flagellar accessory protein FlaH compare
MMJJ_RS08710 +1.1 5.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS05400 +1.1 2.6 CoA-binding protein compare
MMJJ_RS03395 +1.1 1.6 hypothetical protein compare
MMJJ_RS07935 +1.1 0.9 protein fwdD compare
MMJJ_RS08225 +1.0 2.6 peptidylprolyl isomerase compare
MMJJ_RS08780 +1.0 3.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
MMJJ_RS00420 +1.0 3.8 CBS domain-containing protein conserved
MMJJ_RS04195 +1.0 3.8 XTP/dITP diphosphatase compare
MMJJ_RS01210 +1.0 1.3 hypothetical protein compare
MMJJ_RS06925 +1.0 1.1 GMP synthase subunit A compare
MMJJ_RS07185 +1.0 1.4 DUF371 domain-containing protein compare
MMJJ_RS06500 +1.0 3.7 class I SAM-dependent methyltransferase compare
MMJJ_RS05740 +1.0 5.0 archaellar assembly protein FlaJ compare
MMJJ_RS03605 +0.9 2.2 TIGR00297 family protein compare
MMJJ_RS08830 +0.9 1.7 hypothetical protein compare
MMJJ_RS06740 +0.9 2.8 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS05760 +0.9 4.7 flagellar protein F compare
MMJJ_RS03850 +0.9 2.4 nucleoside-diphosphate kinase compare
MMJJ_RS05745 +0.9 4.3 type II/IV secretion system ATPase subunit compare
MMJJ_RS05510 +0.9 3.3 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS05915 +0.8 1.8 multiprotein bridging factor aMBF1 compare
MMJJ_RS08750 +0.8 4.3 glycosyltransferase compare
MMJJ_RS07500 +0.8 4.4 hypothetical protein compare
MMJJ_RS08730 +0.8 4.3 glycosyltransferase family 4 protein compare
MMJJ_RS05755 +0.8 3.8 flagellar protein G compare
MMJJ_RS07210 +0.8 4.2 AmmeMemoRadiSam system protein B compare
MMJJ_RS07010 +0.8 3.0 preprotein translocase subunit Sec61beta compare
MMJJ_RS08720 +0.8 5.1 UDP-glucose/GDP-mannose dehydrogenase family protein compare
MMJJ_RS06090 +0.8 2.9 hypothetical protein compare
MMJJ_RS02140 +0.8 3.8 preflagellin peptidase FlaK compare
MMJJ_RS03410 +0.8 1.7 hypothetical protein compare
MMJJ_RS07595 +0.8 2.6 hypothetical protein compare
MMJJ_RS05820 +0.8 2.3 DUF2304 domain-containing protein compare
MMJJ_RS05685 +0.7 2.7 class III signal peptide-containing protein compare
MMJJ_RS05975 +0.7 3.0 sulfurtransferase TusA family protein compare
MMJJ_RS02115 +0.7 2.9 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07450 +0.7 2.0 hypothetical protein compare
MMJJ_RS01825 +0.7 2.4 DNA repair and recombination protein RadB compare
MMJJ_RS08715 +0.7 3.6 NAD-dependent epimerase/dehydratase family protein compare
MMJJ_RS09205 +0.7 1.6 hypothetical protein compare
MMJJ_RS05790 +0.7 3.0 flagellin compare
MMJJ_RS08180 +0.7 2.2 ABC transporter ATP-binding protein compare
MMJJ_RS07205 +0.7 1.9 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS04955 +0.7 2.7 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS06975 +0.7 1.5 protein translocase SEC61 complex subunit gamma compare
MMJJ_RS07015 +0.7 0.5 PFL family protein compare
MMJJ_RS03070 +0.7 1.0 MetS family NSS transporter small subunit compare
MMJJ_RS06120 +0.7 2.9 DUF4013 domain-containing protein compare
MMJJ_RS01270 +0.7 3.2 4Fe-4S binding protein compare
MMJJ_RS00305 +0.7 2.8 chemotaxis protein CheC compare
MMJJ_RS02340 +0.7 2.5 SAM-dependent methyltransferase compare
MMJJ_RS05115 +0.7 1.4 P-II family nitrogen regulator compare
MMJJ_RS06540 +0.7 1.3 DUF2120 domain-containing protein compare
MMJJ_RS05365 +0.7 2.1 DUF2798 domain-containing protein compare
MMJJ_RS01055 +0.7 1.8 hypothetical protein compare
MMJJ_RS09065 +0.6 2.1 hypothetical protein compare
MMJJ_RS05585 +0.6 2.5 hypothetical protein compare
MMJJ_RS07405 +0.6 1.4 histone family protein compare
MMJJ_RS08760 +0.6 2.8 glycosyltransferase family 9 protein compare
MMJJ_RS08485 +0.6 1.5 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS00665 +0.6 4.1 lysine 2,3-aminomutase compare
MMJJ_RS08100 +0.6 2.2 hypothetical protein compare
MMJJ_RS04610 +0.6 1.7 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS03575 +0.6 2.0 NUDIX hydrolase compare
MMJJ_RS07260 +0.6 2.6 PspC domain-containing protein compare
MMJJ_RS05785 +0.6 2.8 flagellin compare
MMJJ_RS08930 +0.6 2.2 5'/3'-nucleotidase SurE compare
MMJJ_RS05980 +0.6 2.2 DUF5400 domain-containing protein compare
MMJJ_RS01745 +0.6 1.8 metal-dependent transcriptional regulator compare
MMJJ_RS06455 +0.6 3.0 YeeE/YedE family protein compare
MMJJ_RS08195 +0.6 1.5 DUF4186 domain-containing protein compare
MMJJ_RS03725 +0.6 0.8 sulfurtransferase TusA family protein compare
MMJJ_RS05505 +0.6 4.4 hypothetical protein compare
MMJJ_RS07690 +0.6 2.3 glycosyltransferase family 4 protein compare
MMJJ_RS04585 +0.6 2.0 phenylacetate--CoA ligase compare
MMJJ_RS05525 +0.6 1.8 GTP-binding protein compare
MMJJ_RS04500 +0.5 2.2 hypothetical protein compare
MMJJ_RS06515 +0.5 2.7 ribonuclease III compare
MMJJ_RS05335 +0.5 1.4 heavy metal-binding domain-containing protein compare
MMJJ_RS09020 +0.5 1.6 hypothetical protein compare
MMJJ_RS06800 +0.5 1.6 prefoldin subunit alpha compare
MMJJ_RS02965 +0.5 1.8 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMJJ_RS08040 +0.5 2.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08470 +0.5 0.9 ferredoxin family protein compare
MMJJ_RS04070 +0.5 3.6 DUF2341 domain-containing protein compare
MMJJ_RS09360 +0.5 2.2 hypothetical protein compare
MMJJ_RS08285 +0.5 2.6 class I SAM-dependent methyltransferase compare
MMJJ_RS06520 +0.5 2.5 TldD/PmbA family protein compare
MMJJ_RS08870 +0.5 0.3 2-isopropylmalate synthase compare
MMJJ_RS00405 +0.5 1.7 flavodoxin family protein compare
MMJJ_RS06290 +0.5 2.1 DUF749 domain-containing protein compare
MMJJ_RS01785 +0.5 0.4 50S ribosomal protein L14e compare
MMJJ_RS06085 +0.5 1.5 proteasome assembly chaperone family protein compare
MMJJ_RS05530 +0.5 0.8 roadblock/LC7 domain-containing protein compare
MMJJ_RS08365 +0.5 1.3 DsrE family protein compare
MMJJ_RS02345 +0.5 2.1 ATP-binding protein compare
MMJJ_RS03240 +0.5 0.6 histone family protein compare
MMJJ_RS06460 +0.5 1.9 cytochrome c compare
MMJJ_RS06210 +0.5 1.1 hypothetical protein compare
MMJJ_RS06470 +0.5 2.0 tripartite tricarboxylate transporter permease compare
MMJJ_RS03730 +0.5 1.1 SWIM zinc finger family protein compare
MMJJ_RS05200 +0.5 2.4 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS08445 +0.5 1.5 cell division ATPase MinD compare
MMJJ_RS06340 +0.5 0.5 coenzyme-B sulfoethylthiotransferase subunit alpha compare
MMJJ_RS04775 +0.5 1.7 DNA-binding protein compare
MMJJ_RS05815 +0.5 0.8 hypothetical protein compare
MMJJ_RS04545 +0.4 0.7 PadR family transcriptional regulator compare
MMJJ_RS03375 +0.4 0.9 hypothetical protein compare
MMJJ_RS05405 +0.4 2.0 DNA cytosine methyltransferase compare
MMJJ_RS03905 +0.4 1.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS05900 +0.4 2.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS05175 +0.4 1.9 CBS domain-containing protein compare
MMJJ_RS08725 +0.4 3.0 flippase compare
MMJJ_RS05520 +0.4 1.9 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS00500 +0.4 1.1 GNAT family N-acetyltransferase compare
MMJJ_RS05390 +0.4 1.8 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS06585 +0.4 1.5 alanine racemase compare
MMJJ_RS06710 +0.4 2.1 TldD/PmbA family protein compare
MMJJ_RS02880 +0.4 1.5 hypothetical protein compare
MMJJ_RS09120 +0.4 0.5 aspartate kinase compare
MMJJ_RS07175 +0.4 2.5 DEAD/DEAH box helicase compare
MMJJ_RS04390 +0.4 2.1 rhomboid family intramembrane serine protease compare
MMJJ_RS04815 +0.4 0.9 TIM barrel protein compare
MMJJ_RS03515 +0.4 1.6 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS00430 +0.4 0.5 ribonuclease Z compare
MMJJ_RS00660 +0.4 2.2 putative beta-lysine N-acetyltransferase compare
MMJJ_RS06675 +0.4 2.0 TIGR01212 family radical SAM protein compare
MMJJ_RS09245 +0.4 1.4 hypothetical protein compare
MMJJ_RS07985 +0.4 1.1 hypothetical protein compare
MMJJ_RS06205 +0.4 1.4 EamA family transporter compare
MMJJ_RS06880 +0.4 0.3 EhaG family protein compare
MMJJ_RS07630 +0.4 2.3 hypothetical protein compare
MMJJ_RS08885 +0.4 1.9 cysteine--tRNA ligase compare
MMJJ_RS04350 +0.4 1.0 hypothetical protein compare
MMJJ_RS05085 +0.4 1.3 hypothetical protein compare
MMJJ_RS06280 +0.4 1.8 hypothetical protein compare
MMJJ_RS02230 +0.4 2.1 hypothetical protein compare
MMJJ_RS09230 +0.4 1.3 hypothetical protein compare
MMJJ_RS06735 +0.4 1.6 cobalt ECF transporter T component CbiQ compare
MMJJ_RS01300 +0.4 1.4 MarR family transcriptional regulator compare
MMJJ_RS05665 +0.4 1.5 hypothetical protein compare
MMJJ_RS06640 +0.4 1.5 YfcE family phosphodiesterase compare
MMJJ_RS03015 +0.4 1.7 Ig-like domain-containing protein compare
MMJJ_RS07455 +0.4 0.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS00635 +0.4 1.7 ABC transporter permease subunit compare
MMJJ_RS04725 +0.4 1.7 branched-chain-amino-acid transaminase compare
MMJJ_RS01590 +0.4 0.3 adenine phosphoribosyltransferase compare
MMJJ_RS06790 +0.4 1.9 nucleotidyltransferase family protein compare
MMJJ_RS05500 +0.4 2.4 hypothetical protein compare
MMJJ_RS06770 +0.4 2.0 hypothetical protein compare
MMJJ_RS02325 +0.4 1.8 hypothetical protein compare
MMJJ_RS02845 +0.4 1.7 hypothetical protein compare
MMJJ_RS03510 +0.4 1.4 acyl-CoA dehydratase activase compare
MMJJ_RS02330 +0.4 1.8 ABC transporter ATP-binding protein compare
MMJJ_RS00965 +0.4 1.1 cyclophilin-like fold protein compare
MMJJ_RS08305 +0.4 1.0 peroxiredoxin compare
MMJJ_RS08655 +0.4 1.6 phospholipase D-like domain-containing protein compare
MMJJ_RS03290 +0.4 2.0 amidohydrolase compare
MMJJ_RS06685 +0.3 2.1 S-layer protein compare
MMJJ_RS06495 +0.3 0.5 hypothetical protein compare
MMJJ_RS02890 +0.3 1.5 ATP-binding protein compare
MMJJ_RS03590 +0.3 0.7 restriction endonuclease compare
MMJJ_RS05345 +0.3 1.3 ATP-dependent Clp protease proteolytic subunit compare
MMJJ_RS07495 +0.3 1.3 4Fe-4S binding protein compare
MMJJ_RS04240 +0.3 1.9 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS06550 +0.3 1.5 ABC transporter permease compare
MMJJ_RS07860 +0.3 1.0 hypothetical protein compare
MMJJ_RS03530 +0.3 1.7 phosphate ABC transporter substrate-binding protein compare
MMJJ_RS00890 +0.3 1.5 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS02160 +0.3 1.3 amino acid ABC transporter permease compare
MMJJ_RS00615 +0.3 0.7 nucleoside deaminase compare
MMJJ_RS07775 +0.3 1.1 fluoride efflux transporter CrcB compare
MMJJ_RS08350 +0.3 2.1 heavy metal translocating P-type ATPase compare
MMJJ_RS05410 +0.3 0.9 RecB-family nuclease compare
MMJJ_RS03525 +0.3 1.3 2-hydroxyacyl-CoA dehydratase family protein compare
MMJJ_RS00775 +0.3 1.5 hypothetical protein compare
MMJJ_RS03750 +0.3 1.3 rubredoxin compare
MMJJ_RS08580 +0.3 0.8 YkgJ family cysteine cluster protein compare
MMJJ_RS05495 +0.3 1.3 MinD/ParA family protein compare
MMJJ_RS01290 +0.3 1.4 hypothetical protein compare
MMJJ_RS02165 +0.3 1.2 ABC transporter substrate-binding protein compare
MMJJ_RS03935 +0.3 1.3 NAAT family transporter compare
MMJJ_RS04225 +0.3 1.5 aldo/keto reductase compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms