Experiment set1IT046 for Phocaeicola vulgatus CL09T03C04
Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Rhamnogalacturonan from soy bean pectic fibre (5 mg/ml)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 12/22/21
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 5 genes in this experiment
For carbon source Rhamnogalacturonan from soy bean pectic fibre in Phocaeicola vulgatus CL09T03C04
For carbon source Rhamnogalacturonan from soy bean pectic fibre across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cobalt-zinc-cadmium resistance | 1 |
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-galactonate degradation | 1 | 1 | 1 |
| D-sorbitol degradation I | 3 | 3 | 1 |