Experiment set1IT045 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Trimethoprim 125 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.8 -3.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -4.3 -3.0 SirA-like protein compare
Psyr_2080 -3.8 -6.3 aminodeoxychorismate synthase, subunit I compare
Psyr_1613 -3.8 -3.7 septum site-determining protein MinC compare
Psyr_4740 -3.6 -6.8 thiazole-phosphate synthase compare
Psyr_1556 -3.4 -3.2 hypothetical protein compare
Psyr_4340 -3.4 -8.1 phosphomethylpyrimidine kinase, putative compare
Psyr_4581 -3.3 -3.3 anthranilate synthase, component II compare
Psyr_4683 -3.3 -3.8 dethiobiotin synthase compare
Psyr_4341 -3.2 -8.7 thiamine-phosphate diphosphorylase compare
Psyr_0454 -2.8 -2.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4686 -2.8 -5.8 8-amino-7-oxononanoate synthase compare
Psyr_1907 -2.7 -4.0 GTP cyclohydrolase I compare
Psyr_1371 -2.7 -7.9 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_4687 -2.7 -6.9 biotin synthase compare
Psyr_1650 -2.6 -4.1 aminodeoxychorismate lyase apoprotein compare
Psyr_3008 -2.6 -6.0 Undecaprenyl-diphosphatase compare
Psyr_0565 -2.5 -6.9 Protein of unknown function UPF0126 compare
Psyr_0487 -2.4 -3.2 glutathione synthase compare
Psyr_4684 -2.4 -3.1 biotin synthesis protein BioC compare
Psyr_4009 -2.3 -8.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0918 -2.3 -10.8 ABC transporter compare
Psyr_0849 -2.3 -11.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0575 -2.3 -4.4 protease FtsH subunit HflC compare
Psyr_2347 -2.2 -3.8 hypothetical protein compare
Psyr_2285 -2.2 -2.8 Twin-arginine translocation pathway signal compare
Psyr_1410 -2.2 -4.8 Holliday junction DNA helicase RuvB compare
Psyr_0549 -2.2 -2.4 Metallophosphoesterase compare
Psyr_3152 -2.1 -1.9 hypothetical protein compare
Psyr_3202 -2.1 -2.4 NADH dehydrogenase subunit G compare
Psyr_2854 -2.1 -6.6 conserved hypothetical protein compare
Psyr_1555 -2.0 -6.3 Cobyrinic acid a,c-diamide synthase compare
Psyr_4091 -2.0 -4.5 8-oxo-dGTPase compare
Psyr_0383 -2.0 -2.6 Twin-arginine translocation protein TatB compare
Psyr_4203 -1.9 -2.4 SsrA-binding protein compare
Psyr_3193 -1.8 -1.7 Transcription factor jumonji, jmjC compare
Psyr_2980 -1.8 -3.9 UDP-glucose pyrophosphorylase compare
Psyr_0917 -1.8 -8.0 ABC-2 compare
Psyr_4627 -1.7 -2.5 dimethyladenosine transferase compare
Psyr_0826 -1.7 -5.8 glucose-6-phosphate isomerase compare
Psyr_2346 -1.7 -4.8 conserved hypothetical protein compare
Psyr_1751 -1.6 -5.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1418 -1.6 -3.4 Radical SAM compare
Psyr_5132 -1.6 -2.6 Glucose-inhibited division protein A subfamily compare
Psyr_3886 -1.5 -1.9 methionyl-tRNA synthetase compare
Psyr_1373 -1.5 -3.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4408 -1.5 -6.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0303 -1.5 -3.4 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2855 -1.5 -3.1 methionine synthase (B12-independent) compare
Psyr_2642 -1.5 -4.3 hypothetical protein compare
Psyr_3287 -1.5 -2.2 DNA topoisomerase I compare
Psyr_1748 -1.5 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0259 -1.4 -3.4 Osmolarity sensor protein envZ compare
Psyr_1747 -1.4 -3.9 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0571 -1.4 -2.9 tRNA isopentenyltransferase compare
Psyr_2095 -1.4 -4.8 Conserved TM helix compare
Psyr_0393 -1.3 -3.4 Protein of unknown function DUF971 compare
Psyr_4940 -1.3 -2.4 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_3728 -1.3 -4.3 hypothetical protein compare
Psyr_2808 -1.3 -2.5 hypothetical protein compare
Psyr_0531 -1.3 -1.8 LmbE-like protein compare
Psyr_2540 -1.3 -2.7 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3090 -1.3 -2.8 hypothetical protein compare
Psyr_1930 -1.3 -2.4 hypothetical protein compare
Psyr_2894 -1.3 -2.2 conserved hypothetical protein compare
Psyr_3020 -1.3 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_3620 -1.3 -1.6 hypothetical protein compare
Psyr_0528 -1.3 -2.2 Carbamoyltransferase compare
Psyr_1447 -1.3 -2.3 conserved hypothetical protein compare
Psyr_0574 -1.2 -3.9 protease FtsH subunit HflK compare
Psyr_0579 -1.2 -7.9 RNAse R compare
Psyr_0475 -1.2 -2.6 Protein of unknown function YGGT compare
Psyr_1935 -1.2 -4.8 Protein of unknown function DUF796 compare
Psyr_3342 -1.2 -1.9 conserved hypothetical protein compare
Psyr_1667 -1.2 -4.4 Colicin V production protein compare
Psyr_4991 -1.2 -1.8 hypothetical protein compare
Psyr_2824 -1.2 -3.6 conserved hypothetical protein compare
Psyr_3341 -1.2 -3.8 hypothetical protein compare
Psyr_4884 -1.2 -4.7 Rhodanese-like protein compare
Psyr_2462 -1.2 -4.0 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_3179 -1.2 -2.4 DNA translocase FtsK compare
Psyr_4362 -1.1 -2.7 Rare lipoprotein A compare
Psyr_3116 -1.1 -3.1 transcriptional regulator, CdaR family compare
Psyr_3427 -1.1 -1.6 conserved hypothetical protein compare
Psyr_5065 -1.1 -5.7 ATP-dependent DNA helicase UvrD compare
Psyr_4424 -1.1 -5.3 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0378 -1.1 -6.0 Glycosyl transferase, family 2 compare
Psyr_0529 -1.1 -3.1 Glycosyl transferase, group 1 compare
Psyr_1931 -1.1 -4.1 hypothetical protein compare
Psyr_0377 -1.1 -5.4 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4316 -1.1 -1.8 conserved hypothetical protein compare
Psyr_4143 -1.1 -2.2 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3808 -1.0 -1.6 hypothetical protein compare
Psyr_4416 -1.0 -2.6 precorrin-8X methylmutase compare
Psyr_4902 -1.0 -2.6 Protein of unknown function DUF495 compare
Psyr_3640 -1.0 -2.6 conserved hypothetical protein compare
Psyr_4093 -1.0 -3.5 glutamate N-acetyltransferase compare
Psyr_3954 -1.0 -3.6 GTP-binding protein LepA compare
Psyr_3701 -1.0 -1.7 thioredoxin, putative compare
Psyr_2848 -1.0 -3.7 hypothetical protein compare
Psyr_2898 -1.0 -4.4 Helix-turn-helix motif protein compare
Psyr_4622 -1.0 -3.1 Nucleotidyl transferase compare
Psyr_1910 -1.0 -3.6 VacJ-like lipoprotein compare
Psyr_2345 -1.0 -4.0 ea59 protein compare
Psyr_2243 -1.0 -2.7 Endoribonuclease L-PSP compare
Psyr_0153 -1.0 -2.8 conserved hypothetical protein compare
Psyr_3199 -1.0 -1.9 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4089 -1.0 -4.0 PAS compare
Psyr_1749 -1.0 -4.2 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3262 -1.0 -1.9 dnaK suppressor protein, putative compare
Psyr_0202 -1.0 -4.9 transcriptional regulator, LysR family compare
Psyr_0724 -1.0 -1.3 conserved hypothetical protein compare
Psyr_1885 -0.9 -1.2 hypothetical protein compare
Psyr_4736 -0.9 -2.1 conserved hypothetical protein compare
Psyr_2292 -0.9 -1.6 L-glutaminase compare
Psyr_0927 -0.9 -2.1 hypothetical protein compare
Psyr_2977 -0.9 -2.4 cointegrate resolution protein T compare
Psyr_4582 -0.9 -0.9 hypothetical protein compare
Psyr_1919 -0.9 -3.5 hypothetical protein compare
Psyr_3581 -0.9 -3.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_3089 -0.9 -6.9 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_3121 -0.9 -2.1 Protein of unknown function DUF1345 compare
Psyr_3377 -0.9 -2.0 transcriptional regulator, MarR family compare
Psyr_4254 -0.9 -1.3 conserved hypothetical protein compare
Psyr_0493 -0.9 -2.0 CheW-like protein compare
Psyr_0595 -0.9 -3.4 Nicotinate phosphoribosyltransferase compare
Psyr_0255 -0.9 -1.5 glutamate-cysteine ligase compare
Psyr_2112 -0.9 -1.5 Protein with unknown function DUF469 compare
Psyr_4015 -0.9 -1.8 conserved domain protein compare
Psyr_5135 -0.9 -1.2 Protein of unknown function DUF37 compare
Psyr_4118 -0.9 -4.0 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1975 -0.9 -2.3 Integrase, catalytic region compare
Psyr_1783 -0.8 -2.1 CDS compare
Psyr_5067 -0.8 -2.9 conserved hypothetical protein compare
Psyr_4566 -0.8 -5.1 Peptidase M23B compare
Psyr_5130 -0.8 -4.6 chromosome segregation ATPase compare
Psyr_2842 -0.8 -4.1 hypothetical protein compare
Psyr_1474 -0.8 -4.6 hypothetical protein compare
Psyr_0919 -0.8 -5.3 Chromosome segregation ATPase-like protein compare
Psyr_1949 -0.8 -2.5 ABC-3 compare
Psyr_2984 -0.8 -1.2 conserved hypothetical protein compare
Psyr_2921 -0.8 -1.8 ADP-ribosylglycohydrolase compare
Psyr_4512 -0.8 -3.6 putative phage-related protein compare
Psyr_4019 -0.8 -2.5 H-NS family protein MvaT compare
Psyr_2664 -0.8 -4.1 hypothetical protein compare
Psyr_3806 -0.8 -2.8 hypothetical protein compare
Psyr_4893 -0.8 -1.3 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3567 -0.8 -1.8 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_3290 -0.8 -2.6 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_5133 -0.8 -2.2 tRNA modification GTPase trmE compare
Psyr_4144 -0.8 -1.4 Protein of unknown function DUF1239 compare
Psyr_4063 -0.8 -3.5 Protein of unknown function DUF1111 compare
Psyr_3905 -0.8 -3.8 glycerol kinase compare
Psyr_2779 -0.8 -1.6 Phage minor tail compare
Psyr_2837 -0.8 -4.9 hypothetical protein compare
Psyr_0395 -0.8 -2.1 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_0369 -0.8 -2.9 lipoprotein, putative compare
Psyr_1924 -0.8 -2.7 hypothetical protein compare
Psyr_4029 -0.8 -4.0 pyruvate kinase compare
Psyr_3547 -0.8 -2.5 transcriptional regulator, TetR family compare
Psyr_3164 -0.8 -4.3 Protein of unknown function UPF0005 compare
Psyr_3857 -0.8 -2.3 conserved hypothetical protein compare
Psyr_1193 -0.8 -1.8 type III helper protein HrpZ1 compare
Psyr_3425 -0.8 -1.9 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_0215 -0.8 -5.2 Exodeoxyribonuclease III xth compare
Psyr_1245 -0.8 -3.6 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_1780 -0.7 -1.0 transcriptional regulator, TetR family compare
Psyr_2247 -0.7 -2.2 ABC transporter compare
Psyr_3637 -0.7 -5.3 Glycosyl transferase, family 4 compare
Psyr_1663 -0.7 -2.7 phosphoribosylanthranilate isomerase compare
Psyr_3904 -0.7 -3.6 Major intrinsic protein compare
Psyr_0970 -0.7 -2.7 Phosphoribosyltransferase compare
Psyr_3198 -0.7 -1.4 NADH dehydrogenase subunit B compare
Psyr_1942 -0.7 -2.3 conserved hypothetical protein compare
Psyr_1460 -0.7 -2.4 hypothetical protein compare
Psyr_0920 -0.7 -5.8 Glycosyl transferase, group 1 compare
Psyr_0835 -0.7 -2.7 transcriptional regulator, TraR/DksA family compare
Psyr_4979 -0.7 -3.5 hypothetical protein compare
Psyr_2182 -0.7 -3.0 hypothetical protein compare
Psyr_3636 -0.7 -4.2 Polysaccharide biosynthesis protein CapD compare
Psyr_1505 -0.7 -1.5 Protein of unknown function DUF156 compare
Psyr_2641 -0.7 -1.8 hypothetical protein compare
Psyr_1459 -0.7 -2.6 DNA polymerase, beta-like region compare
Psyr_0907 -0.7 -1.8 conserved hypothetical protein compare
Psyr_1268 -0.7 -3.5 extracellular solute-binding protein, family 3:SLT compare
Psyr_2154 -0.7 -2.6 transcriptional regulator, LacI family compare
Psyr_4634 -0.7 -1.2 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3740 -0.7 -3.2 Protein of unknown function DUF454 compare
Psyr_2472 -0.7 -3.3 transcriptional regulator, MerR family compare
Psyr_2348 -0.7 -1.5 hypothetical protein compare
Psyr_5129 -0.7 -1.9 chromosome segregation DNA-binding protein compare
Psyr_2461 -0.7 -1.5 Uncharacterized conserved protein UCP030820 compare
Psyr_4055 -0.7 -1.8 conserved domain protein compare
Psyr_4141 -0.7 -2.7 ABC transporter compare
Psyr_4309 -0.7 -2.6 hypothetical protein compare
Psyr_0373 -0.7 -1.4 CDS compare
Psyr_2823 -0.7 -1.3 hypothetical protein compare
Psyr_2698 -0.7 -4.5 Ricin B lectin compare
Psyr_3720 -0.7 -3.3 Filamentation induced by cAMP protein Fic compare
Psyr_2065 -0.7 -3.0 transcription elongation factor GreB compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Trimethoprim across organisms