Experiment set1IT045 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Paraquat dichloride 0.003 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23145 +8.4 38.4 hypothetical protein compare
CA265_RS17145 +8.0 44.4 malate:quinone oxidoreductase compare
CA265_RS23525 +6.8 51.2 hypothetical protein compare
CA265_RS21060 +6.5 32.9 hypothetical protein compare
CA265_RS16005 +6.2 10.4 hypothetical protein compare
CA265_RS19575 +5.9 18.1 glycoside hydrolase compare
CA265_RS22690 +5.5 44.0 hypothetical protein compare
CA265_RS15895 +5.4 22.5 hypothetical protein compare
CA265_RS13195 +5.3 10.5 SAM-dependent methyltransferase compare
CA265_RS06610 +4.5 38.0 transmembrane HD family protein compare
CA265_RS08965 +4.4 5.0 thioesterase compare
CA265_RS20785 +4.2 3.4 hypothetical protein compare
CA265_RS16130 +4.1 15.7 cell division protein FtsX compare
CA265_RS23505 +4.0 7.3 biopolymer transporter ExbD compare
CA265_RS20315 +3.7 31.4 hypothetical protein compare
CA265_RS19940 +3.7 32.6 hypothetical protein compare
CA265_RS06320 +3.7 27.2 hypothetical protein compare
CA265_RS15200 +3.7 20.0 hypothetical protein compare
CA265_RS20320 +3.6 33.1 hypothetical protein compare
CA265_RS19605 +3.5 21.3 serine hydrolase compare
CA265_RS20350 +3.2 20.1 gliding motility lipoprotein GldH compare
CA265_RS15195 +3.2 11.8 hypothetical protein compare
CA265_RS19945 +3.1 8.1 hypothetical protein compare
CA265_RS10595 +3.0 13.2 dicarboxylate/amino acid:cation symporter compare
CA265_RS22630 +3.0 9.6 nucleoside-diphosphate sugar epimerase compare
CA265_RS15900 +3.0 3.0 hypothetical protein compare
CA265_RS18770 +2.9 7.3 hypothetical protein compare
CA265_RS20790 +2.9 4.6 hypothetical protein compare
CA265_RS05070 +2.8 16.5 Na+/H+ antiporter NhaA compare
CA265_RS20780 +2.8 6.8 hypothetical protein compare
CA265_RS19025 +2.7 9.1 peptidase M23 compare
CA265_RS23565 +2.7 3.5 NADH dehydrogenase compare
CA265_RS22805 +2.7 10.1 glycosyl transferase compare
CA265_RS08895 +2.7 12.7 mannose-1-phosphate guanylyltransferase compare
CA265_RS23510 +2.7 12.7 energy transducer TonB compare
CA265_RS13200 +2.6 6.0 phosphatase PAP2 family protein compare
CA265_RS21910 +2.6 20.6 glycoside hydrolase compare
CA265_RS06395 +2.5 7.4 hypothetical protein compare
CA265_RS12665 +2.4 5.6 cold-shock protein compare
CA265_RS18135 +2.4 6.0 uroporphyrinogen-III synthase compare
CA265_RS20355 +2.4 7.2 hypothetical protein compare
CA265_RS24255 +2.4 10.0 sugar kinase compare
CA265_RS11760 +2.4 5.7 mobilization protein compare
CA265_RS18140 +2.4 11.1 DUF4271 domain-containing protein compare
CA265_RS16605 +2.4 19.6 1-pyrroline-5-carboxylate dehydrogenase compare
CA265_RS22800 +2.3 10.9 glycosyl transferase compare
CA265_RS03630 +2.3 6.6 histidinol-phosphate transaminase compare
CA265_RS22010 +2.2 1.4 hypothetical protein compare
CA265_RS25110 +2.2 11.5 polyprenyl synthetase compare
CA265_RS14580 +2.2 15.7 cytidylate kinase compare
CA265_RS20775 +2.2 4.6 hypothetical protein compare
CA265_RS03085 +2.2 6.1 hypothetical protein compare
CA265_RS14910 +2.1 15.1 ABC transporter ATP-binding protein compare
CA265_RS12745 +2.1 8.7 NUDIX hydrolase compare
CA265_RS10990 +2.1 8.9 hypothetical protein compare
CA265_RS20770 +2.1 3.6 hypothetical protein compare
CA265_RS14485 +2.1 8.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS03515 +2.0 9.0 Fe-S assembly protein IscX compare
CA265_RS10170 +2.0 3.7 hypothetical protein compare
CA265_RS23190 +2.0 7.6 transcription elongation factor GreA compare
CA265_RS17495 +2.0 3.2 lipoprotein signal peptidase compare
CA265_RS08855 +2.0 13.0 MFS transporter compare
CA265_RS17200 +2.0 6.4 DNA mismatch repair protein MutL compare
CA265_RS19740 +2.0 7.9 gliding motility lipoprotein GldD compare
CA265_RS25450 +1.9 5.8 iron-sulfur cluster assembly accessory protein compare
CA265_RS22790 +1.9 9.6 hypothetical protein compare
CA265_RS09055 +1.9 9.8 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS06315 +1.9 8.7 uridine kinase compare
CA265_RS01010 +1.9 5.2 NADP transhydrogenase subunit alpha compare
CA265_RS14825 +1.9 3.4 outer membrane protein assembly factor BamD compare
CA265_RS01005 +1.8 5.8 SAM-dependent methyltransferase compare
CA265_RS15985 +1.8 13.9 mechanosensitive ion channel protein MscS compare
CA265_RS21900 +1.8 14.8 two-component sensor histidine kinase compare
CA265_RS19380 +1.8 9.9 beta-carotene 15,15'-monooxygenase compare
CA265_RS24980 +1.8 3.1 hypothetical protein compare
CA265_RS19495 +1.8 8.1 FkbM family methyltransferase compare
CA265_RS20610 +1.7 1.6 hypothetical protein compare
CA265_RS09270 +1.7 5.8 hypothetical protein compare
CA265_RS23545 +1.7 3.8 NADH dehydrogenase subunit D compare
CA265_RS18190 +1.7 11.2 cupin compare
CA265_RS23195 +1.7 8.2 HIT family protein compare
CA265_RS02990 +1.6 9.5 mannosyltransferase compare
CA265_RS13255 +1.6 7.2 leucine dehydrogenase compare
CA265_RS15085 +1.6 11.1 hypothetical protein compare
CA265_RS11605 +1.6 9.5 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS20795 +1.6 2.5 hypothetical protein compare
CA265_RS13020 +1.6 7.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS03160 +1.5 6.2 hydrolase compare
CA265_RS22425 +1.5 4.8 oxidoreductase compare
CA265_RS20660 +1.5 3.8 hypothetical protein compare
CA265_RS18435 +1.5 10.7 peptide chain release factor 3 compare
CA265_RS21565 +1.5 2.8 cold-shock protein compare
CA265_RS23640 +1.5 11.6 hypothetical protein compare
CA265_RS12905 +1.5 6.3 hypothetical protein compare
CA265_RS10905 +1.5 2.8 iron-dependent repressor compare
CA265_RS18225 +1.5 10.5 DNA-binding response regulator compare
CA265_RS10610 +1.5 4.4 hypothetical protein compare
CA265_RS15535 +1.5 4.3 methionine sulfoxide reductase B compare
CA265_RS19420 +1.5 2.4 hypothetical protein compare
CA265_RS16115 +1.5 8.8 DEAD/DEAH box helicase compare
CA265_RS16010 +1.4 2.0 short-chain dehydrogenase compare
CA265_RS16090 +1.4 10.2 ribonuclease BN compare
CA265_RS03290 +1.4 9.4 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS07460 +1.4 7.5 deoxynucleoside kinase compare
CA265_RS10940 +1.4 10.2 hypothetical protein compare
CA265_RS03295 +1.4 9.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS25305 +1.4 1.4 hypothetical protein compare
CA265_RS04105 +1.4 11.2 siroheme synthase compare
CA265_RS18120 +1.4 10.8 gliding motility protein GldM compare
CA265_RS23430 +1.4 4.3 hypothetical protein compare
CA265_RS08205 +1.4 4.6 histidine phosphatase family protein compare
CA265_RS21290 +1.3 4.4 hypothetical protein compare
CA265_RS18990 +1.3 12.3 cell surface protein SprA compare
CA265_RS10750 +1.3 6.5 SMC-Scp complex subunit ScpB compare
CA265_RS02580 +1.3 4.2 hypothetical protein compare
CA265_RS10495 +1.3 2.7 hypothetical protein compare
CA265_RS18115 +1.3 9.0 gliding motility protein GldN compare
CA265_RS03260 +1.3 8.3 multidrug ABC transporter ATP-binding protein compare
CA265_RS02435 +1.3 3.8 hypothetical protein compare
CA265_RS20055 +1.3 6.2 thiamine phosphate synthase compare
CA265_RS15910 +1.3 9.6 hypothetical protein compare
CA265_RS23520 +1.3 7.2 phosphate ABC transporter substrate-binding protein compare
CA265_RS10540 +1.3 1.5 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS11770 +1.3 4.3 hypothetical protein compare
CA265_RS04395 +1.3 6.0 heptosyltransferase compare
CA265_RS13740 +1.3 7.6 cysteine synthase compare
CA265_RS09840 +1.2 2.5 YajQ family cyclic di-GMP-binding protein compare
CA265_RS15640 +1.2 7.7 sugar kinase compare
CA265_RS09620 +1.2 8.9 FAD-binding oxidoreductase compare
CA265_RS02605 +1.2 5.2 hypothetical protein compare
CA265_RS20115 +1.2 6.9 hypothetical protein compare
CA265_RS04095 +1.2 9.3 nitrite reductase compare
CA265_RS21905 +1.2 5.3 hypothetical protein compare
CA265_RS23560 +1.2 1.0 DNA-binding protein compare
CA265_RS07470 +1.2 1.5 hypothetical protein compare
CA265_RS19220 +1.2 3.7 hypothetical protein compare
CA265_RS15170 +1.2 7.7 peptidase M23 compare
CA265_RS16325 +1.2 2.0 CsbD family protein compare
CA265_RS18600 +1.2 5.9 hypothetical protein compare
CA265_RS04100 +1.1 4.5 uroporphyrinogen-III C-methyltransferase compare
CA265_RS17025 +1.1 2.8 hypothetical protein compare
CA265_RS23605 +1.1 4.8 alkaline phosphatase compare
CA265_RS17575 +1.1 8.4 acyl-CoA dehydrogenase compare
CA265_RS02200 +1.1 5.2 NUDIX hydrolase compare
CA265_RS08890 +1.1 6.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS16155 +1.1 3.9 tRNA pseudouridine(55) synthase TruB compare
CA265_RS18130 +1.1 8.0 gliding motility-associated lipoprotein compare
CA265_RS17100 +1.1 4.5 hypothetical protein compare
CA265_RS18310 +1.1 4.8 thioredoxin family protein compare
CA265_RS11635 +1.1 4.4 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS14125 +1.1 2.9 hypothetical protein compare
CA265_RS14640 +1.1 2.4 UDP-glucose 4-epimerase compare
CA265_RS17555 +1.0 7.6 hypothetical protein compare
CA265_RS22290 +1.0 3.8 NADPH quinone reductase MdaB compare
CA265_RS04020 +1.0 6.0 hypothetical protein compare
CA265_RS12765 +1.0 6.7 SRPBCC family protein compare
CA265_RS24830 +1.0 8.2 beta-N-acetylhexosaminidase compare
CA265_RS16525 +1.0 4.2 FAD-dependent oxidoreductase compare
CA265_RS23985 +1.0 5.7 gliding motility lipoprotein GldB compare
CA265_RS21255 +1.0 5.7 hypothetical protein compare
CA265_RS03125 +1.0 2.6 hypothetical protein compare
CA265_RS09800 +1.0 6.5 chromosome partitioning protein ParA compare
CA265_RS04000 +1.0 3.5 hypothetical protein compare
CA265_RS23800 +1.0 4.6 methyltransferase type 12 compare
CA265_RS11610 +1.0 1.5 RNA-binding protein S4 compare
CA265_RS20380 +1.0 5.9 hemagglutinin compare
CA265_RS08135 +1.0 5.5 amidohydrolase compare
CA265_RS15115 +1.0 3.5 porin compare
CA265_RS25365 +1.0 4.4 glycerol acyltransferase compare
CA265_RS03110 +1.0 3.9 DUF58 domain-containing protein compare
CA265_RS11775 +1.0 1.9 hypothetical protein compare
CA265_RS12945 +1.0 5.9 hypothetical protein compare
CA265_RS21195 +1.0 7.2 hypothetical protein compare
CA265_RS21260 +1.0 5.7 hypothetical protein compare
CA265_RS23635 +1.0 7.5 gliding motility lipoprotein GldJ compare
CA265_RS08975 +1.0 4.5 hypothetical protein compare
CA265_RS05185 +1.0 3.6 hypothetical protein compare
CA265_RS24280 +1.0 2.7 cupin compare
CA265_RS21395 +0.9 1.7 hypothetical protein compare
CA265_RS18035 +0.9 4.2 hypothetical protein compare
CA265_RS13750 +0.9 4.5 hypothetical protein compare
CA265_RS16035 +0.9 5.5 oxidoreductase compare
CA265_RS17140 +0.9 4.4 thioredoxin family protein compare
CA265_RS04885 +0.9 1.5 tRNA-Gly compare
CA265_RS04400 +0.9 5.3 hypothetical protein compare
CA265_RS22005 +0.9 2.8 S9 family peptidase compare
CA265_RS01800 +0.9 4.2 ABC transporter permease compare
CA265_RS25095 +0.9 3.8 MBL fold metallo-hydrolase compare
CA265_RS00490 +0.9 6.1 hypothetical protein compare
CA265_RS24230 +0.9 6.6 RNA polymerase sigma factor compare
CA265_RS19535 +0.9 5.3 hypothetical protein compare
CA265_RS13190 +0.9 2.4 hypothetical protein compare
CA265_RS14535 +0.9 2.5 DUF4783 domain-containing protein compare
CA265_RS10530 +0.9 4.5 ribonuclease R compare
CA265_RS19005 +0.9 6.1 lytic transglycosylase compare
CA265_RS00995 +0.9 3.1 hypothetical protein compare
CA265_RS14475 +0.9 2.9 glutathione peroxidase compare
CA265_RS10620 +0.9 4.8 hypothetical protein compare
CA265_RS14415 +0.9 6.0 pseudouridine synthase compare
CA265_RS00035 +0.9 6.0 FAD-binding protein compare


Specific Phenotypes

For 48 genes in this experiment

For stress Paraquat dichloride in Pedobacter sp. GW460-11-11-14-LB5

For stress Paraquat dichloride across organisms