Experiment set1IT045 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with 1-ethyl-3-methylimidazolium chloride 5 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_0171 -3.9 -3.4 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_4188 -2.8 -8.0 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_2707 -2.8 -8.0 fructose-1,6-bisphosphatase, class II compare
Ga0059261_2189 -2.7 -9.7 uncharacterized domain 1 compare
Ga0059261_4187 -2.7 -12.3 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_0790 -2.7 -4.0 putative membrane protein insertion efficiency factor compare
Ga0059261_0175 -2.4 -9.6 heme exporter protein CcmC compare
Ga0059261_0349 -2.3 -5.2 MarR family compare
Ga0059261_0170 -2.3 -5.8 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_0321 -2.2 -3.3 hypothetical protein compare
Ga0059261_0163 -2.2 -4.9 Major Facilitator Superfamily compare
Ga0059261_0613 -2.1 -5.4 FecR family protein compare
Ga0059261_0172 -1.9 -8.7 Cytochrome c biogenesis factor compare
Ga0059261_4012 -1.9 -3.2 AMP nucleosidase compare
Ga0059261_3488 -1.8 -2.9 Histidine kinase/HAMP domain compare
Ga0059261_3615 -1.8 -2.0 hypothetical protein compare
Ga0059261_1369 -1.8 -10.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_4186 -1.8 -2.3 Phosphopantetheine attachment site compare
Ga0059261_1507 -1.7 -3.7 deoxycytidine triphosphate deaminase compare
Ga0059261_2417 -1.6 -4.4 phytoene desaturase compare
Ga0059261_1909 -1.6 -6.9 MAF protein compare
Ga0059261_1696 -1.5 -4.9 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_3502 -1.5 -3.6 Fatty acid desaturase compare
Ga0059261_2490 -1.5 -5.6 Small protein A (tmRNA-binding) compare
Ga0059261_2005 -1.5 -5.0 protoheme IX farnesyltransferase compare
Ga0059261_1312 -1.5 -5.6 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_2286 -1.5 -6.0 Fe2+ transport system protein B compare
Ga0059261_1911 -1.5 -1.9 Thioredoxin-like proteins and domains compare
Ga0059261_3103 -1.4 -4.7 Glycosyltransferase compare
Ga0059261_2444 -1.3 -5.9 5-aminolevulinic acid synthase compare
Ga0059261_1370 -1.3 -6.9 Signal transduction histidine kinase compare
Ga0059261_1419 -1.3 -4.8 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_2391 -1.3 -2.4 Helix-turn-helix domain compare
Ga0059261_3097 -1.2 -5.3 Calcineurin-like phosphoesterase compare
Ga0059261_1560 -1.2 -3.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_2181 -1.1 -8.4 penicillin-binding protein, 1A family compare
Ga0059261_4224 -1.1 -2.2 hypothetical protein compare
Ga0059261_1846 -1.0 -6.4 Xaa-Pro aminopeptidase compare
Ga0059261_3979 -1.0 -3.1 elongation factor 4 compare
Ga0059261_1985 -1.0 -1.9 transcriptional regulator NrdR compare
Ga0059261_3866 -0.9 -6.6 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
Ga0059261_0136 -0.9 -3.6 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_1214 -0.9 -1.8 hypothetical protein compare
Ga0059261_3196 -0.8 -1.8 Transcriptional regulator compare
Ga0059261_1287 -0.8 -5.2 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_3451 -0.8 -1.5 hypothetical protein compare
Ga0059261_0875 -0.8 -1.3 Leucyl aminopeptidase compare
Ga0059261_1774 -0.8 -1.8 hypothetical protein compare
Ga0059261_1472 -0.8 -1.9 hypothetical protein compare
Ga0059261_3671 -0.8 -2.1 Citrate lyase beta subunit compare
Ga0059261_0246 -0.8 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_2179 -0.8 -5.4 Phospholipid N-methyltransferase compare
Ga0059261_1563 -0.8 -1.5 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_3276 -0.8 -4.2 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_1605 -0.8 -3.7 transcriptional regulator, TetR family compare
Ga0059261_0255 -0.8 -2.2 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_0290 -0.8 -3.2 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_2190 -0.7 -2.0 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_0656 -0.7 -2.3 Predicted dehydrogenases and related proteins compare
Ga0059261_3101 -0.7 -2.2 nucleotide sugar dehydrogenase compare
Ga0059261_3339 -0.7 -4.3 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_1951 -0.7 -3.0 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_1831 -0.7 -2.1 hypothetical protein compare
Ga0059261_1257 -0.7 -4.6 Uncharacterized iron-regulated protein compare
Ga0059261_0623 -0.7 -2.5 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_1565 -0.7 -5.6 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_3657 -0.7 -4.0 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_4060 -0.7 -1.9 Predicted membrane protein compare
Ga0059261_1382 -0.7 -3.8 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_1545 -0.7 -2.2 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_3609 -0.7 -3.0 Protein of unknown function (DUF2945) compare
Ga0059261_0664 -0.7 -1.4 pseudouridine synthase, RluA family compare
Ga0059261_3341 -0.7 -3.4 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_3130 -0.7 -4.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1566 -0.6 -4.4 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_3159 -0.6 -2.5 TolR protein compare
Ga0059261_3127 -0.6 -2.9 hypothetical protein compare
Ga0059261_3748 -0.6 -1.9 ribosomal protein L15, bacterial/organelle compare
Ga0059261_1119 -0.6 -1.5 Chemotaxis signal transduction protein compare
Ga0059261_1008 -0.6 -1.9 Geranylgeranyl pyrophosphate synthase compare
Ga0059261_2013 -0.6 -4.8 signal peptidase I, bacterial type compare
Ga0059261_2089 -0.6 -2.6 flagellar basal-body rod protein FlgB compare
Ga0059261_1561 -0.6 -3.4 Signal transduction histidine kinase compare
Ga0059261_3114 -0.6 -3.7 hypothetical protein compare
Ga0059261_3347 -0.6 -2.3 Domain of unknown function DUF87 compare
Ga0059261_2501 -0.6 -3.5 C-terminal peptidase (prc) compare
Ga0059261_3340 -0.6 -3.2 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_0918 -0.6 -2.7 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_3119 -0.6 -1.9 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_1707 -0.6 -1.4 hypothetical protein compare
Ga0059261_4203 -0.6 -2.8 Arabinose efflux permease compare
Ga0059261_1868 -0.6 -1.7 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_2418 -0.6 -2.5 lycopene cyclase compare
Ga0059261_3938 -0.6 -3.9 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_1527 -0.6 -1.3 hypothetical protein compare
Ga0059261_1339 -0.5 -1.1 hypothetical protein compare
Ga0059261_3493 -0.5 -2.9 hypothetical protein compare
Ga0059261_2481 -0.5 -2.7 Ppx/GppA phosphatase family compare
Ga0059261_3129 -0.5 -3.6 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_1912 -0.5 -1.8 Nitroreductase compare
Ga0059261_2458 -0.5 -3.0 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_1169 -0.5 -2.2 hypothetical protein compare
Ga0059261_1547 -0.5 -3.3 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_0991 -0.5 -3.6 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_3156 -0.5 -2.2 peptidoglycan-associated lipoprotein compare
Ga0059261_2243 -0.5 -1.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1417 -0.5 -1.2 transcriptional regulator, XRE family compare
Ga0059261_0089 -0.5 -2.3 trigger factor compare
Ga0059261_3620 -0.5 -1.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_3321 -0.5 -1.7 pyrroline-5-carboxylate reductase compare
Ga0059261_2416 -0.5 -2.3 TIGR00730 family protein compare
Ga0059261_2076 -0.5 -0.9 hypothetical protein compare
Ga0059261_0245 -0.5 -0.8 pseudouridine synthase compare
Ga0059261_1258 -0.5 -4.4 TonB-dependent siderophore receptor compare
Ga0059261_1869 -0.5 -2.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_1453 -0.5 -2.8 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs compare
Ga0059261_1914 -0.5 -1.0 Acetyltransferases compare
Ga0059261_2351 -0.5 -1.3 hypothetical protein compare
Ga0059261_1451 -0.5 -1.8 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_2522 -0.5 -2.1 export-related chaperone protein CsaA compare
Ga0059261_0990 -0.4 -4.0 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_1213 -0.4 -1.5 hypothetical protein compare
Ga0059261_3085 -0.4 -1.4 Predicted transcriptional regulators compare
Ga0059261_1562 -0.4 -2.1 Uncharacterized conserved protein compare
Ga0059261_0390 -0.4 -0.8 Ribbon-helix-helix protein, copG family compare
Ga0059261_2540 -0.4 -0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1349 -0.4 -1.3 hypothetical protein compare
Ga0059261_3443 -0.4 -2.4 hypothetical protein compare
Ga0059261_1043 -0.4 -1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1601 -0.4 -1.0 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_0411 -0.4 -1.5 Uncharacterized conserved protein compare
Ga0059261_0725 -0.4 -0.9 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_2191 -0.4 -2.3 ribosomal subunit interface protein compare
Ga0059261_1310 -0.4 -1.6 Predicted transcriptional regulators compare
Ga0059261_2021 -0.4 -3.5 Protein of unknown function (DUF2029) compare
Ga0059261_2548 -0.4 -1.3 tRNA compare
Ga0059261_2009 -0.4 -3.3 cytochrome c oxidase, subunit II compare
Ga0059261_2277 -0.4 -1.0 hypothetical protein compare
Ga0059261_3519 -0.4 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_3937 -0.4 -3.3 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0810 -0.4 -1.8 Predicted Zn-dependent proteases and their inactivated homologs compare
Ga0059261_0344 -0.4 -1.4 Molecular chaperone (small heat shock protein) compare
Ga0059261_1496 -0.4 -1.8 uroporphyrin-III C-methyltransferase compare
Ga0059261_0239 -0.4 -0.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_0650 -0.4 -0.8 Negative regulator of beta-lactamase expression compare
Ga0059261_3430 -0.4 -1.1 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_3006 -0.4 -1.7 hypothetical protein compare
Ga0059261_1564 -0.4 -1.6 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1928 -0.4 -1.4 Predicted permeases compare
Ga0059261_1871 -0.4 -2.8 ABC transport permease subunit compare
Ga0059261_2847 -0.4 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1652 -0.4 -0.7 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_1870 -0.4 -2.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_3221 -0.4 -3.1 Cytochrome c1 compare
Ga0059261_0493 -0.4 -0.8 hypothetical protein compare
Ga0059261_0893 -0.4 -1.5 inosine-5'-monophosphate dehydrogenase compare
Ga0059261_4133 -0.4 -2.1 hypothetical protein compare
Ga0059261_2268 -0.4 -2.6 Cytochrome c2 compare
Ga0059261_0950 -0.4 -1.2 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_2048 -0.4 -2.5 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3186 -0.4 -2.7 Excinuclease ABC subunit C compare
Ga0059261_3506 -0.4 -0.9 Predicted permeases compare
Ga0059261_1929 -0.4 -1.6 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_1872 -0.4 -1.9 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_3833 -0.4 -1.4 hypothetical protein compare
Ga0059261_0069 -0.4 -1.8 tRNA dimethylallyltransferase compare
Ga0059261_0155 -0.4 -2.8 peroxiredoxin compare
Ga0059261_4204 -0.4 -1.3 transcriptional regulator, TetR family compare
Ga0059261_2232 -0.4 -1.8 Uncharacterized conserved protein compare
Ga0059261_0393 -0.4 -1.2 hypothetical protein compare
Ga0059261_2293 -0.4 -1.9 cell division ATP-binding protein FtsE compare
Ga0059261_0037 -0.4 -2.5 hypothetical protein compare
Ga0059261_4025 -0.4 -0.9 Nucleotidyl transferase compare
Ga0059261_3944 -0.4 -1.8 hypothetical protein compare
Ga0059261_2970 -0.4 -2.7 PAS domain S-box compare
Ga0059261_2774 -0.4 -0.9 Transcription elongation factor compare
Ga0059261_3865 -0.4 -2.4 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
Ga0059261_4140 -0.3 -1.6 hypothetical protein compare
Ga0059261_4217 -0.3 -0.5 hypothetical protein compare
Ga0059261_1975 -0.3 -2.1 hypothetical protein compare
Ga0059261_3395 -0.3 -1.9 hypothetical protein compare
Ga0059261_0834 -0.3 -1.7 hypothetical protein compare
Ga0059261_3211 -0.3 -2.4 hypothetical protein compare
Ga0059261_1241 -0.3 -2.1 MerT mercuric transport protein compare
Ga0059261_2002 -0.3 -2.1 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_0174 -0.3 -0.7 hypothetical protein compare
Ga0059261_2034 -0.3 -2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0891 -0.3 -1.2 hypothetical protein compare
Ga0059261_0131 -0.3 -1.7 hypothetical protein compare
Ga0059261_3872 -0.3 -1.6 Outer membrane protein compare
Ga0059261_0985 -0.3 -2.0 hypothetical protein compare
Ga0059261_1847 -0.3 -1.5 hypothetical protein compare
Ga0059261_3335 -0.3 -0.7 hypothetical protein compare
Ga0059261_4068 -0.3 -1.6 Predicted membrane protein compare
Ga0059261_3552 -0.3 -2.1 hypothetical protein compare
Ga0059261_3374 -0.3 -1.7 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_3824 -0.3 -2.3 Bacterial Cytochrome Ubiquinol Oxidase compare
Ga0059261_3884 -0.3 -1.6 K+-transporting ATPase, B subunit compare
Ga0059261_0439 -0.3 -1.3 hypothetical protein compare
Ga0059261_2737 -0.3 -1.9 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress 1-ethyl-3-methylimidazolium chloride across organisms