Experiment set1IT045 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.6 -4.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14365 -6.4 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS16265 -6.1 -5.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS05860 -5.8 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS30655 -5.7 -6.7 LysR family transcriptional regulator compare
RR42_RS16255 -5.2 -9.3 sulfate adenylyltransferase compare
RR42_RS19005 -5.1 -4.9 3-dehydroquinate synthase compare
RR42_RS14390 -5.0 -4.8 3-isopropylmalate dehydratase compare
RR42_RS06485 -5.0 -8.3 chorismate synthase compare
RR42_RS14400 -4.9 -3.4 isopropylmalate isomerase compare
RR42_RS16280 -4.8 -7.6 transcriptional regulator compare
RR42_RS18300 -4.8 -6.6 anthranilate synthase subunit II compare
RR42_RS16250 -4.6 -7.7 sulfate adenylyltransferase compare
RR42_RS01160 -4.4 -9.4 homoserine O-acetyltransferase compare
RR42_RS04475 -4.4 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS19010 -4.3 -10.0 shikimate kinase compare
RR42_RS18305 -4.3 -3.7 anthranilate phosphoribosyltransferase compare
RR42_RS18295 -4.2 -13.7 anthranilate synthase component I compare
RR42_RS14320 -4.1 -5.1 O-succinylhomoserine sulfhydrylase compare
RR42_RS30660 -4.1 -9.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04535 -4.0 -6.0 cysteine synthase compare
RR42_RS16270 -3.9 -10.4 sulfite reductase compare
RR42_RS17645 -3.9 -7.9 shikimate dehydrogenase compare
RR42_RS14385 -3.9 -7.0 3-isopropylmalate dehydrogenase compare
RR42_RS01845 -3.9 -2.5 glycerol-3-phosphate dehydrogenase compare
RR42_RS16245 -3.8 -6.2 uroporphyrin-III methyltransferase compare
RR42_RS28290 -3.6 -5.0 DNA-binding protein compare
RR42_RS04470 -3.5 -5.8 prephenate dehydrogenase compare
RR42_RS17355 -3.4 -1.5 hypothetical protein compare
RR42_RS01290 -3.3 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS16275 -3.2 -3.4 membrane protein compare
RR42_RS33255 -3.2 -5.1 protein-tyrosine phosphatase compare
RR42_RS14360 -3.1 -1.9 tryptophan synthase subunit alpha compare
RR42_RS04460 -3.1 -6.9 chorismate mutase compare
RR42_RS19750 -3.0 -1.9 MBL fold metallo-hydrolase compare
RR42_RS30640 -2.7 -6.4 DNA mismatch repair protein MutT compare
RR42_RS33355 -2.4 -4.9 membrane protein compare
RR42_RS06095 -2.4 -3.2 hypothetical protein compare
RR42_RS04700 -2.3 -2.0 ribonuclease G compare
RR42_RS16240 -2.3 -2.0 cobalamin biosynthesis protein CbiX compare
RR42_RS16260 -2.3 -1.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS09580 -2.3 -1.7 hypothetical protein compare
RR42_RS06020 -2.2 -1.6 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS33250 -2.2 -7.6 tyrosine protein kinase compare
RR42_RS06240 -2.2 -2.4 tryptophan--tRNA ligase compare
RR42_RS33260 -2.1 -6.6 multidrug MFS transporter compare
RR42_RS07555 -2.0 -2.1 potassium transporter Kup compare
RR42_RS15525 -2.0 -1.7 hypothetical protein compare
RR42_RS01775 -2.0 -5.9 glutamate--cysteine ligase compare
RR42_RS20205 -2.0 -3.6 chromosome partitioning protein compare
RR42_RS15470 -2.0 -2.4 biopolymer transporter ExbD compare
RR42_RS02775 -1.9 -3.1 molecular chaperone SurA compare
RR42_RS08450 -1.9 -2.2 hypothetical protein compare
RR42_RS15035 -1.9 -5.6 ZIP zinc transporter compare
RR42_RS27520 -1.8 -2.9 hypothetical protein compare
RR42_RS07365 -1.8 -3.6 pyruvate dehydrogenase compare
RR42_RS18855 -1.8 -4.2 preprotein translocase compare
RR42_RS01505 -1.7 -1.8 tRNA-Cys compare
RR42_RS03035 -1.7 -1.5 membrane protein compare
RR42_RS26900 -1.7 -1.6 enoyl-CoA hydratase compare
RR42_RS27120 -1.6 -1.8 amino acid ABC transporter permease compare
RR42_RS13935 -1.6 -3.1 hemin transporter compare
RR42_RS01920 -1.6 -3.0 protoheme IX farnesyltransferase compare
RR42_RS08000 -1.6 -1.6 hypothetical protein compare
RR42_RS05955 -1.6 -1.3 hypothetical protein compare
RR42_RS15890 -1.5 -5.5 heme biosynthesis protein HemY compare
RR42_RS15090 -1.5 -4.7 DNA helicase compare
RR42_RS01380 -1.5 -1.4 membrane protein compare
RR42_RS33240 -1.5 -9.9 GDP-L-fucose synthase compare
RR42_RS17375 -1.5 -1.5 hypothetical protein compare
RR42_RS03980 -1.5 -4.5 Fis family transcriptional regulator compare
RR42_RS19045 -1.5 -1.2 frataxin compare
RR42_RS17050 -1.5 -4.3 phosphoribosylglycinamide formyltransferase compare
RR42_RS32590 -1.4 -1.7 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS02705 -1.4 -2.1 Holliday junction DNA helicase RuvA compare
RR42_RS15120 -1.4 -1.7 4-oxalocrotonate tautomerase compare
RR42_RS09015 -1.4 -2.3 trigger factor compare
RR42_RS29490 -1.4 -2.1 toxin HipA compare
RR42_RS03080 -1.4 -3.2 recombinase RecA compare
RR42_RS33235 -1.4 -6.6 GDP-mannose 4,6-dehydratase compare
RR42_RS32600 -1.4 -3.4 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS12040 -1.3 -5.7 MFS transporter compare
RR42_RS03985 -1.3 -5.9 histidine kinase conserved
RR42_RS12215 -1.3 -3.1 ribonuclease compare
RR42_RS08575 -1.3 -1.2 tail protein compare
RR42_RS14790 -1.3 -7.6 cobalamin biosynthesis protein CobD compare
RR42_RS07565 -1.3 -6.8 transcription accessory protein compare
RR42_RS02500 -1.3 -1.5 TetR family transcriptional regulator compare
RR42_RS13040 -1.3 -3.2 iron transporter compare
RR42_RS07605 -1.3 -4.7 poly-beta-hydroxybutyrate polymerase compare
RR42_RS12550 -1.3 -3.1 hypothetical protein compare
RR42_RS09290 -1.3 -1.4 hypothetical protein compare
RR42_RS15000 -1.2 -2.6 GTP cyclohydrolase compare
RR42_RS15895 -1.2 -5.8 uroporphyrinogen III methyltransferase compare
RR42_RS03085 -1.2 -1.1 RecX family transcriptional regulator compare
RR42_RS22585 -1.2 -1.6 MarR family transcriptional regulator compare
RR42_RS12050 -1.2 -4.4 DNA polymerase compare
RR42_RS28525 -1.2 -3.3 PadR family transcriptional regulator compare
RR42_RS17885 -1.2 -4.1 ABC transporter permease compare
RR42_RS19885 -1.2 -1.5 aminoglycoside transporter compare
RR42_RS15050 -1.2 -5.8 DNA polymerase I compare
RR42_RS00420 -1.2 -2.7 hypothetical protein compare
RR42_RS23515 -1.2 -4.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS32520 -1.2 -2.1 cytochrome C compare
RR42_RS17735 -1.2 -4.3 hypothetical protein compare
RR42_RS03990 -1.2 -5.1 aspartate:proton symporter Glt (from data) compare
RR42_RS18385 -1.2 -1.7 hypothetical protein compare
RR42_RS17390 -1.1 -5.5 ATP-dependent DNA helicase RecG compare
RR42_RS17105 -1.1 -6.2 Clp protease ClpX compare
RR42_RS20195 -1.1 -0.8 ATPase F0F1 compare
RR42_RS19895 -1.1 -1.7 elongation factor GreAB compare
RR42_RS33245 -1.1 -5.2 mannose-1-phosphate guanyltransferase compare
RR42_RS13910 -1.1 -5.3 glutamate racemase compare
RR42_RS03530 -1.1 -1.2 hypothetical protein compare
RR42_RS14755 -1.1 -2.9 hypothetical protein compare
RR42_RS04895 -1.1 -5.5 serine/threonine protein phosphatase compare
RR42_RS16220 -1.1 -1.2 DNA polymerase III subunit chi compare
RR42_RS10920 -1.1 -1.7 hypothetical protein compare
RR42_RS11795 -1.1 -2.1 PEP synthetase regulatory protein compare
RR42_RS28315 -1.1 -3.0 GntR family transcriptional regulator compare
RR42_RS02085 -1.1 -4.7 RNA polymerase subunit sigma-54 compare
RR42_RS02380 -1.0 -3.8 FAD-linked oxidase compare
RR42_RS15795 -1.0 -3.0 spore coat protein compare
RR42_RS21220 -1.0 -1.8 iron transporter FeoB compare
RR42_RS08590 -1.0 -1.3 baseplate assembly protein compare
RR42_RS22230 -1.0 -1.4 hypothetical protein compare
RR42_RS17060 -1.0 -7.6 histidine kinase compare
RR42_RS18825 -1.0 -2.7 ubiquinol-cytochrome C reductase compare
RR42_RS07295 -1.0 -2.3 LysR family transcriptional regulator compare
RR42_RS32740 -1.0 -1.0 enoyl-CoA hydratase compare
RR42_RS19485 -1.0 -1.1 general secretion pathway protein GspH compare
RR42_RS02045 -1.0 -6.8 GTPase compare
RR42_RS18020 -1.0 -2.7 ornithine acetyltransferase compare
RR42_RS18270 -1.0 -1.6 murein transglycosylase compare
RR42_RS12925 -1.0 -1.8 ATPase compare
RR42_RS36130 -0.9 -5.9 phytanoyl-CoA dioxygenase compare
RR42_RS17970 -0.9 -1.0 hypothetical protein compare
RR42_RS32710 -0.9 -1.7 hypothetical protein compare
RR42_RS33215 -0.9 -5.1 transferase compare
RR42_RS11520 -0.9 -2.0 ABC transporter ATP-binding protein compare
RR42_RS01500 -0.9 -1.8 hypothetical protein compare
RR42_RS07150 -0.9 -1.1 hypothetical protein compare
RR42_RS19900 -0.9 -1.7 MerR family transcriptional regulator compare
RR42_RS26985 -0.9 -2.3 hypothetical protein compare
RR42_RS26200 -0.9 -1.4 hypothetical protein compare
RR42_RS12615 -0.9 -1.2 LexA family transcriptional regulator compare
RR42_RS27915 -0.9 -1.4 acyl-CoA synthetase compare
RR42_RS17055 -0.9 -4.1 LuxR family transcriptional regulator compare
RR42_RS10545 -0.9 -2.5 NADPH:quinone dehydrogenase compare
RR42_RS11770 -0.9 -0.7 cyclase compare
RR42_RS18850 -0.9 -2.2 preprotein translocase subunit TatC compare
RR42_RS15475 -0.9 -3.5 protein tolQ compare
RR42_RS08210 -0.9 -0.9 hypothetical protein compare
RR42_RS28400 -0.9 -1.1 CoA-transferase compare
RR42_RS25645 -0.9 -2.6 hypothetical protein compare
RR42_RS15410 -0.9 -2.7 membrane protein compare
RR42_RS21075 -0.9 -1.0 phosphoribosyltransferase compare
RR42_RS02490 -0.9 -2.7 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
RR42_RS06355 -0.9 -2.4 Fe-S cluster assembly protein HesB compare
RR42_RS24820 -0.9 -1.3 hypothetical protein compare
RR42_RS06565 -0.9 -1.8 metal-binding protein compare
RR42_RS31035 -0.9 -1.6 CDP-alcohol phosphatidyltransferase compare
RR42_RS31290 -0.9 -1.2 XRE family transcriptional regulator compare
RR42_RS08365 -0.9 -4.5 hypothetical protein compare
RR42_RS04180 -0.9 -1.5 methyltransferase compare
RR42_RS32975 -0.8 -1.3 LysR family transcriptional regulator compare
RR42_RS27215 -0.8 -2.1 LysR family transcriptional regulator compare
RR42_RS24040 -0.8 -2.8 hypothetical protein compare
RR42_RS33210 -0.8 -3.0 teichoic acid biosynthesis protein compare
RR42_RS37240 -0.8 -1.2 hypothetical protein compare
RR42_RS36495 -0.8 -1.5 enoyl-CoA hydratase compare
RR42_RS00940 -0.8 -4.2 biotin synthase compare
RR42_RS19555 -0.8 -1.7 hypothetical protein compare
RR42_RS20285 -0.8 -2.2 amino acid ABC transporter ATP-binding protein compare
RR42_RS30940 -0.8 -3.2 cobalt-zinc-cadmium resistance protein compare
RR42_RS13905 -0.8 -2.3 fumarate hydratase compare
RR42_RS23140 -0.8 -0.8 peptidylprolyl isomerase compare
RR42_RS35895 -0.8 -3.0 PadR family transcriptional regulator compare
RR42_RS08795 -0.8 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein B compare
RR42_RS13465 -0.8 -2.2 phosphate transporter permease subunit PstC compare
RR42_RS19655 -0.8 -1.1 tRNA-Ala compare
RR42_RS04770 -0.8 -1.0 methylglyoxal synthase compare
RR42_RS08330 -0.8 -1.0 hypothetical protein compare
RR42_RS12325 -0.8 -3.1 glutathione S-transferase compare
RR42_RS01915 -0.8 -2.6 cytochrome C oxidase subunit I compare
RR42_RS32800 -0.8 -2.8 nucleotidyltransferase compare
RR42_RS34680 -0.8 -1.0 short-chain dehydrogenase compare
RR42_RS16175 -0.8 -1.2 enoyl-CoA hydratase compare
RR42_RS17720 -0.8 -1.4 sugar kinase compare
RR42_RS20485 -0.8 -2.4 thiol-disulfide isomerase compare
RR42_RS14055 -0.8 -1.5 elongation factor 4 compare
RR42_RS21605 -0.8 -1.6 S-adenosylhomocysteine hydrolase compare
RR42_RS08170 -0.8 -1.8 hypothetical protein compare
RR42_RS01885 -0.8 -2.7 cytochrome C oxidase assembly protein compare
RR42_RS19920 -0.8 -2.9 membrane protein compare
RR42_RS35875 -0.8 -4.6 UDP-galactose-4-epimerase compare
RR42_RS29235 -0.8 -2.1 hypothetical protein compare
RR42_RS35220 -0.8 -1.0 peptide ABC transporter ATP-binding protein compare
RR42_RS27245 -0.8 -2.2 hypothetical protein compare
RR42_RS29040 -0.8 -2.5 histidyl-tRNA synthetase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Cupriavidus basilensis FW507-4G11

For carbon source L-Asparagine across organisms