Experiment set1IT045 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS18725 +1.3 1.4 hypothetical protein compare
RR42_RS26130 +1.3 4.0 C4-dicarboxylate ABC transporter compare
RR42_RS17805 +1.3 1.6 hypothetical protein compare
RR42_RS09835 +1.3 2.7 chemotaxis protein compare
RR42_RS19635 +1.2 2.2 hypothetical protein compare
RR42_RS23220 +1.2 4.3 MarR family transcriptional regulator compare
RR42_RS34570 +1.0 2.4 hypothetical protein compare
RR42_RS05665 +0.9 1.2 urease accessory protein UreJ compare
RR42_RS03545 +0.9 2.8 hypothetical protein compare
RR42_RS35725 +0.9 1.7 flagellar biosynthesis protein FlgB compare
RR42_RS18700 +0.9 1.9 membrane protein compare
RR42_RS15060 +0.9 2.2 membrane protein compare
RR42_RS24535 +0.9 2.0 tRNA-Asn compare
RR42_RS31330 +0.9 1.1 LysR family transcriptional regulator compare
RR42_RS37045 +0.9 1.3 thiamine biosynthesis protein ApbE compare
RR42_RS05125 +0.9 2.6 malonic semialdehyde reductase compare
RR42_RS16620 +0.9 2.2 hypothetical protein compare
RR42_RS08770 +0.9 1.3 2-nitropropane dioxygenase compare
RR42_RS02210 +0.9 0.8 succinate dehydrogenase compare
RR42_RS20295 +0.9 2.0 alpha/beta hydrolase compare
RR42_RS13865 +0.9 1.8 hypothetical protein compare
RR42_RS27655 +0.9 2.9 hypothetical protein compare
RR42_RS01180 +0.9 3.1 acyl-CoA thioesterase compare
RR42_RS34335 +0.9 2.7 hypothetical protein compare
RR42_RS01095 +0.9 1.8 membrane protein compare
RR42_RS26540 +0.8 1.1 3-phosphoglycerate dehydrogenase compare
RR42_RS00115 +0.8 1.5 hypothetical protein compare
RR42_RS20575 +0.8 2.3 hypothetical protein compare
RR42_RS05750 +0.8 1.5 fructose 2,6-bisphosphatase compare
RR42_RS01045 +0.8 2.0 Fur family transcriptional regulator compare
RR42_RS16565 +0.8 3.0 hypothetical protein compare
RR42_RS03910 +0.8 1.5 (2Fe-2S)-binding protein compare
RR42_RS02420 +0.8 1.0 SAM-dependent methyltransferase compare
RR42_RS17595 +0.8 2.2 hypothetical protein compare
RR42_RS31790 +0.8 1.4 nitrite reductase compare
RR42_RS06925 +0.8 1.4 hypothetical protein compare
RR42_RS27465 +0.8 5.1 ionic transporter y4hA compare
RR42_RS23305 +0.8 1.5 hypothetical protein compare
RR42_RS31240 +0.8 2.7 AMP-dependent synthetase compare
RR42_RS32495 +0.8 1.4 shikimate kinase compare
RR42_RS07240 +0.8 1.5 hypothetical protein compare
RR42_RS10855 +0.8 0.9 diguanylate phosphodiesterase compare
RR42_RS17590 +0.8 1.0 16S rRNA methyltransferase compare
RR42_RS07825 +0.8 2.1 D-amino acid oxidase compare
RR42_RS19490 +0.8 1.8 general secretion pathway protein GspI compare
RR42_RS33815 +0.7 1.0 isochorismatase compare
RR42_RS23370 +0.7 2.6 flagellar motor switch protein FliN compare
RR42_RS09010 +0.7 2.5 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
RR42_RS06000 +0.7 1.3 antibiotic biosynthesis monooxygenase compare
RR42_RS19765 +0.7 2.0 arsenate reductase compare
RR42_RS02030 +0.7 2.0 membrane protein compare
RR42_RS32895 +0.7 2.7 ABC transporter permease compare
RR42_RS10310 +0.7 1.6 NADPH:quinone reductase compare
RR42_RS09830 +0.7 1.2 DNA-binding protein compare
RR42_RS20370 +0.7 1.1 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS05670 +0.7 1.4 urease subunit beta compare
RR42_RS07155 +0.7 1.1 hypothetical protein compare
RR42_RS14700 +0.7 2.3 hypothetical protein compare
RR42_RS22165 +0.7 0.8 hypothetical protein compare
RR42_RS05500 +0.7 1.0 preprotein translocase subunit SecG compare
RR42_RS12860 +0.6 1.4 pseudouridine synthase compare
RR42_RS27050 +0.6 2.0 transporter compare
RR42_RS24355 +0.6 3.2 hypothetical protein compare
RR42_RS10165 +0.6 2.1 hypothetical protein compare
RR42_RS25030 +0.6 1.3 ABC transporter permease compare
RR42_RS34280 +0.6 2.4 hypothetical protein compare
RR42_RS35445 +0.6 1.8 ArsR family transcriptional regulator compare
RR42_RS12095 +0.6 1.7 monooxygenase compare
RR42_RS03680 +0.6 1.4 hypothetical protein compare
RR42_RS02960 +0.6 1.6 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS17635 +0.6 1.7 magnesium transporter CorA compare
RR42_RS32035 +0.6 1.1 short-chain dehydrogenase compare
RR42_RS28910 +0.6 1.5 XRE family transcriptional regulator compare
RR42_RS31435 +0.6 0.9 hypothetical protein compare
RR42_RS27160 +0.6 1.5 acetyl-CoA acetyltransferase compare
RR42_RS35410 +0.6 3.2 arsenic resistance operon repressor compare
RR42_RS01535 +0.6 2.2 3-isopropylmalate dehydratase compare
RR42_RS19525 +0.6 1.6 general secretion pathway protein GspE compare
RR42_RS16400 +0.6 2.8 chitin deacetylase compare
RR42_RS31920 +0.6 1.0 acetyl-CoA acetyltransferase compare
RR42_RS35790 +0.6 3.1 chemotaxis protein CheD compare
RR42_RS04275 +0.6 1.4 hypothetical protein compare
RR42_RS12375 +0.6 2.2 LysR family transcriptional regulator compare
RR42_RS32670 +0.6 0.8 phenol hydroxylase compare
RR42_RS02270 +0.6 1.1 hypothetical protein compare
RR42_RS27475 +0.6 1.7 phospholipid-binding protein compare
RR42_RS20910 +0.6 1.8 hypothetical protein compare
RR42_RS20360 +0.6 1.1 AsnC family transcriptional regulator compare
RR42_RS29525 +0.6 0.8 hypothetical protein compare
RR42_RS08175 +0.6 0.8 hypothetical protein compare
RR42_RS24760 +0.6 0.9 hypothetical protein compare
RR42_RS29505 +0.6 2.2 hypothetical protein compare
RR42_RS29610 +0.6 0.9 cytochrome C2 compare
RR42_RS06710 +0.6 1.2 hypothetical protein compare
RR42_RS32505 +0.6 1.5 sulfonate ABC transporter ATP-binding protein compare
RR42_RS35630 +0.6 3.0 ArsR family transcriptional regulator compare
RR42_RS18720 +0.6 2.8 hypothetical protein compare
RR42_RS11660 +0.6 1.1 hypothetical protein compare
RR42_RS10195 +0.6 0.7 hypothetical protein compare
RR42_RS08490 +0.6 1.8 phage Rha protein compare
RR42_RS11280 +0.6 0.9 phenylacetic acid degradation protein compare
RR42_RS09605 +0.6 1.9 hypothetical protein compare
RR42_RS01860 +0.6 1.0 amidophosphoribosyltransferase compare
RR42_RS21455 +0.6 1.3 transposase compare
RR42_RS10275 +0.6 2.1 LuxR family transcriptional regulator compare
RR42_RS27900 +0.6 2.5 4-hyroxy-2-oxovalerate aldolase compare
RR42_RS06700 +0.6 1.4 hypothetical protein compare
RR42_RS08425 +0.6 1.0 hypothetical protein compare
RR42_RS34050 +0.6 2.4 helicase compare
RR42_RS30765 +0.6 0.8 tRNA-Arg compare
RR42_RS01705 +0.6 1.2 Fis family transcriptional regulator compare
RR42_RS26330 +0.6 1.8 hypothetical protein compare
RR42_RS35455 +0.6 2.6 membrane protein compare
RR42_RS06865 +0.6 1.6 hypothetical protein compare
RR42_RS16375 +0.5 2.4 short-chain dehydrogenase compare
RR42_RS27605 +0.5 2.1 hypothetical protein compare
RR42_RS16430 +0.5 1.7 transposase compare
RR42_RS27705 +0.5 1.0 NAD-dependent deacetylase compare
RR42_RS22575 +0.5 1.2 hypothetical protein compare
RR42_RS26875 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS28005 +0.5 1.0 phosphonate/organophosphate ester transporter subunit compare
RR42_RS30105 +0.5 2.7 taurine dioxygenase compare
RR42_RS35295 +0.5 1.1 diguanylate cyclase compare
RR42_RS08860 +0.5 1.2 radical SAM protein compare
RR42_RS24190 +0.5 2.6 LysR family transcriptional regulator compare
RR42_RS04765 +0.5 0.7 3-oxoacyl-ACP reductase compare
RR42_RS16510 +0.5 1.2 hypothetical protein compare
RR42_RS07200 +0.5 1.3 hypothetical protein compare
RR42_RS35665 +0.5 2.3 hypothetical protein compare
RR42_RS31960 +0.5 0.8 biphenyl 2,3-dioxygenase compare
RR42_RS15205 +0.5 1.6 pyridoxamine 5'-phosphate oxidase compare
RR42_RS20775 +0.5 0.6 hypothetical protein compare
RR42_RS23765 +0.5 1.8 tRNA-Gly compare
RR42_RS06850 +0.5 2.0 hypothetical protein compare
RR42_RS32935 +0.5 2.1 CopG family transcriptional regulator compare
RR42_RS09995 +0.5 2.2 MBL fold metallo-hydrolase compare
RR42_RS21965 +0.5 2.2 hypothetical protein compare
RR42_RS05120 +0.5 1.6 ABC transporter substrate-binding protein compare
RR42_RS01325 +0.5 2.9 hypothetical protein compare
RR42_RS15290 +0.5 1.5 cupin compare
RR42_RS11785 +0.5 0.7 NfeD-like family protein 1 compare
RR42_RS35415 +0.5 2.9 hypothetical protein compare
RR42_RS02455 +0.5 2.3 agmatinase compare
RR42_RS26405 +0.5 1.4 hypothetical protein compare
RR42_RS32850 +0.5 1.2 universal stress protein UspA compare
RR42_RS06335 +0.5 0.9 cyclophilin compare
RR42_RS05425 +0.5 2.7 membrane protein compare
RR42_RS37120 +0.5 2.6 acetyltransferase compare
RR42_RS09630 +0.5 1.5 hypothetical protein compare
RR42_RS33900 +0.5 2.7 membrane protein compare
RR42_RS08970 +0.5 1.9 XRE family transcriptional regulator compare
RR42_RS35535 +0.5 2.8 hypothetical protein compare
RR42_RS10110 +0.5 2.3 phosphonate ABC transporter substrate-binding protein compare
RR42_RS11805 +0.5 1.5 ribonuclease HII compare
RR42_RS20340 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS14520 +0.5 1.2 mobilization protein compare
RR42_RS16440 +0.5 3.0 dihydropyrimidinase compare
RR42_RS34115 +0.5 1.5 hypothetical protein compare
RR42_RS23295 +0.5 1.8 hypothetical protein compare
RR42_RS28490 +0.5 1.7 hypothetical protein compare
RR42_RS09240 +0.5 0.8 MFS transporter compare
RR42_RS06820 +0.5 1.9 hypothetical protein compare
RR42_RS31675 +0.5 1.7 enoyl-CoA hydratase compare
RR42_RS23950 +0.5 2.6 hypothetical protein compare
RR42_RS10255 +0.5 2.2 gluconate 5-dehydrogenase compare
RR42_RS01650 +0.5 1.4 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS15865 +0.5 0.9 uracil phosphoribosyltransferase compare
RR42_RS12335 +0.5 2.0 twin-arginine translocation pathway signal protein compare
RR42_RS35675 +0.5 3.0 flagellar hook protein FlgL compare
RR42_RS03250 +0.5 1.2 MarR family transcriptional regulator compare
RR42_RS06760 +0.5 2.7 hypothetical protein compare
RR42_RS37160 +0.5 2.0 DNA-binding protein compare
RR42_RS31495 +0.5 0.9 Cro/Cl family transcriptional regulator compare
RR42_RS22590 +0.5 0.6 organic hydroperoxide resistance protein compare
RR42_RS07440 +0.5 0.8 hypothetical protein compare
RR42_RS35565 +0.5 3.2 phosphate ABC transporter substrate-binding protein compare
RR42_RS36025 +0.5 1.9 hemagglutinin compare
RR42_RS28815 +0.5 2.0 iron dicitrate transport regulator FecR compare
RR42_RS25650 +0.5 0.8 hypothetical protein compare
RR42_RS04380 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS26435 +0.5 0.9 ferredoxin compare
RR42_RS06430 +0.5 0.8 hypothetical protein compare
RR42_RS10010 +0.5 1.0 3-oxoadipate CoA-transferase compare
RR42_RS25520 +0.5 2.1 alpha/beta hydrolase compare
RR42_RS00655 +0.5 1.1 membrane protein compare
RR42_RS16625 +0.5 2.3 hypothetical protein compare
RR42_RS25625 +0.5 0.8 LysR family transcriptional regulator compare
RR42_RS11595 +0.5 1.4 hypothetical protein compare
RR42_RS35585 +0.5 2.7 hypothetical protein compare
RR42_RS15255 +0.5 2.3 peptidyl-prolyl cis-trans isomerase compare
RR42_RS26575 +0.5 2.0 LysR family transcriptional regulator compare
RR42_RS26885 +0.5 1.8 peptidase M20 compare
RR42_RS15370 +0.5 1.7 MarR family transcriptional regulator compare
RR42_RS21690 +0.5 0.6 acetyltransferase compare
RR42_RS19745 +0.5 1.0 RlpA-like protein compare
RR42_RS24790 +0.5 0.3 LysR family transcriptional regulator compare
RR42_RS34275 +0.5 1.3 virulence protein compare
RR42_RS35500 +0.5 2.3 hypothetical protein compare
RR42_RS22600 +0.5 0.8 heavy metal resistance protein CzcE compare
RR42_RS16535 +0.5 1.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Cupriavidus basilensis FW507-4G11

For carbon source L-Asparagine across organisms