Experiment set1IT045 for Phocaeicola vulgatus CL09T03C04

Compare to:

Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09675 -6.7 -4.0 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15870 -5.5 -8.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS14785 -5.3 -6.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08840 -5.2 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15875 -5.2 -9.4 histidinol dehydrogenase compare
HMPREF1058_RS12105 -5.2 -3.3 shikimate kinase compare
HMPREF1058_RS06175 -5.2 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS14770 -5.0 -8.4 prephenate dehydrogenase compare
HMPREF1058_RS08855 -4.9 -10.8 arginine repressor compare
HMPREF1058_RS14565 -4.8 -14.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS07200 -4.8 -10.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS09585 -4.8 -19.5 argininosuccinate lyase compare
HMPREF1058_RS08875 -4.7 -13.5 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS14545 -4.7 -11.6 2-isopropylmalate synthase compare
HMPREF1058_RS14550 -4.7 -13.5 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14725 -4.7 -12.9 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS06180 -4.6 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS07170 -4.6 -10.4 tryptophan synthase subunit beta compare
HMPREF1058_RS08830 -4.6 -9.5 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS04065 -4.5 -1.9 VWA domain-containing protein compare
HMPREF1058_RS02220 -4.5 -7.4 branched-chain amino acid aminotransferase compare
HMPREF1058_RS16835 -4.4 -8.0 ketol-acid reductoisomerase compare
HMPREF1058_RS02410 -4.4 -21.3 methylmalonyl-CoA mutase compare
HMPREF1058_RS02405 -4.4 -17.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS16815 -4.4 -13.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS07955 -4.4 -10.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15885 -4.4 -8.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS07175 -4.4 -12.0 anthranilate synthase component I family protein compare
HMPREF1058_RS02975 -4.4 -2.2 hypothetical protein compare
HMPREF1058_RS14730 -4.4 -10.9 threonine synthase compare
HMPREF1058_RS14200 -4.3 -18.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS11270 -4.3 -10.0 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS06340 -4.3 -4.2 electron transport complex subunit RsxC compare
HMPREF1058_RS12490 -4.3 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS07185 -4.3 -11.1 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS01270 -4.3 -4.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS12780 -4.3 -13.4 M20 family metallo-hydrolase compare
HMPREF1058_RS06170 -4.3 -5.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08850 -4.3 -9.6 N-acetyltransferase compare
HMPREF1058_RS07195 -4.2 -4.3 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS01540 -4.2 -6.5 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS01685 -4.2 -2.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS06195 -4.2 -7.0 diaminopimelate decarboxylase compare
HMPREF1058_RS14790 -4.2 -14.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS12115 -4.2 -10.9 acetylglutamate kinase compare
HMPREF1058_RS01590 -4.2 -10.1 glucuronate isomerase compare
HMPREF1058_RS04080 -4.1 -2.9 AAA family ATPase compare
HMPREF1058_RS11205 -4.1 -2.1 radical SAM protein compare
HMPREF1058_RS16505 -4.1 -9.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS14720 -4.1 -16.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS03000 -4.1 -7.9 IMP dehydrogenase compare
HMPREF1058_RS08535 -4.1 -2.5 elongation factor P compare
HMPREF1058_RS08645 -4.1 -13.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS07190 -4.1 -7.0 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15880 -4.1 -12.6 histidinol-phosphate transaminase compare
HMPREF1058_RS04070 -4.1 -2.8 hypothetical protein compare
HMPREF1058_RS07655 -4.1 -1.4 hypothetical protein compare
HMPREF1058_RS14610 -4.1 -16.4 adenylosuccinate synthase compare
HMPREF1058_RS08025 -4.1 -7.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS01700 -4.0 -7.1 altronate dehydratase compare
HMPREF1058_RS16495 -4.0 -3.7 biotin/lipoyl-binding protein compare
HMPREF1058_RS06320 -4.0 -8.4 electron transport complex subunit RsxA compare
HMPREF1058_RS06335 -4.0 -7.1 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS14835 -3.9 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS17155 -3.9 -2.7 dCMP deaminase family protein compare
HMPREF1058_RS04075 -3.9 -2.7 DUF58 domain-containing protein compare
HMPREF1058_RS01570 -3.9 -4.6 ABC transporter substrate-binding protein compare
HMPREF1058_RS08640 -3.9 -3.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS04300 -3.9 -4.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS18205 -3.8 -4.6 ferrous iron transport protein B compare
HMPREF1058_RS08650 -3.8 -9.9 glutamate 5-kinase compare
HMPREF1058_RS06345 -3.8 -7.1 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06325 -3.8 -3.7 electron transport complex subunit E compare
HMPREF1058_RS06310 -3.7 -5.1 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS10080 -3.7 -16.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13795 -3.6 -13.1 DUF4954 family protein compare
HMPREF1058_RS08845 -3.6 -6.3 argininosuccinate synthase compare
HMPREF1058_RS19090 -3.6 -0.9 tRNA-Phe compare
HMPREF1058_RS16500 -3.6 -6.0 OadG family protein compare
HMPREF1058_RS01560 -3.6 -6.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS10995 -3.6 -9.0 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS04045 -3.6 -4.9 tetratricopeptide repeat protein compare
HMPREF1058_RS15915 -3.6 -4.2 OmpH family outer membrane protein compare
HMPREF1058_RS16820 -3.6 -12.0 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS15075 -3.5 -12.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS00560 -3.5 -3.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS17080 -3.5 -3.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS02485 -3.5 -7.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS01585 -3.5 -7.8 tagaturonate reductase compare
HMPREF1058_RS12070 -3.4 -3.3 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS05805 -3.4 -11.1 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS10075 -3.4 -12.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS01690 -3.4 -6.1 sugar kinase compare
HMPREF1058_RS04050 -3.4 -2.3 protein BatD compare
HMPREF1058_RS0119830 -3.4 -0.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01395 -3.3 -6.0 cobyric acid synthase compare
HMPREF1058_RS14920 -3.3 -13.3 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS06190 -3.3 -5.5 aspartate kinase compare
HMPREF1058_RS01550 -3.3 -8.6 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS02170 -3.3 -7.7 hypothetical protein compare
HMPREF1058_RS14220 -3.3 -3.9 energy transducer TonB compare
HMPREF1058_RS05780 -3.3 -9.5 PD40 domain-containing protein compare
HMPREF1058_RS14795 -3.3 -8.1 prephenate dehydratase compare
HMPREF1058_RS11040 -3.3 -6.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS12110 -3.3 -10.0 biosynthetic arginine decarboxylase compare
HMPREF1058_RS04295 -3.2 -5.8 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS01575 -3.2 -7.2 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS03800 -3.2 -7.6 serine hydroxymethyltransferase compare
HMPREF1058_RS03085 -3.2 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14490 -3.2 -13.2 S9 family peptidase compare
HMPREF1058_RS01405 -3.2 -7.1 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS08325 -3.2 -5.5 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS07180 -3.2 -5.3 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS14005 -3.1 -2.2 3-dehydroquinate synthase compare
HMPREF1058_RS02540 -3.1 -5.8 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS01545 -3.1 -5.2 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS17205 -3.1 -2.0 DUF4199 domain-containing protein compare
HMPREF1058_RS01565 -3.0 -8.7 iron ABC transporter permease compare
HMPREF1058_RS14560 -3.0 -8.5 2-isopropylmalate synthase compare
HMPREF1058_RS01385 -3.0 -6.7 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS10720 -2.9 -4.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS01275 -2.9 -7.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS02480 -2.9 -4.9 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS13635 -2.9 -4.7 gliding motility lipoprotein GldH compare
HMPREF1058_RS08835 -2.9 -5.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS17965 -2.8 -1.4 DUF452 family protein compare
HMPREF1058_RS02495 -2.8 -8.8 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS17975 -2.8 -9.7 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS17815 -2.8 -7.7 MFS transporter compare
HMPREF1058_RS16730 -2.8 -2.7 chorismate synthase compare
HMPREF1058_RS11730 -2.8 -2.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS15375 -2.8 -2.2 DUF4369 domain-containing protein compare
HMPREF1058_RS06350 -2.8 -5.8 SoxR reducing system RseC family protein compare
HMPREF1058_RS17535 -2.7 -1.4 IS21-like element helper ATPase IstB compare
HMPREF1058_RS05140 -2.7 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS11490 -2.7 -4.9 redox-regulated ATPase YchF compare
HMPREF1058_RS17035 -2.7 -8.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS14215 -2.7 -3.2 (d)CMP kinase compare
HMPREF1058_RS04375 -2.7 -10.8 carbon-nitrogen hydrolase compare
HMPREF1058_RS01280 -2.7 -4.9 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS16510 -2.6 -3.6 methylmalonyl-CoA epimerase compare
HMPREF1058_RS01555 -2.6 -5.4 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS04025 -2.6 -7.6 hypothetical protein compare
HMPREF1058_RS10270 -2.6 -3.4 hypothetical protein compare
HMPREF1058_RS00700 -2.6 -10.6 DUF4831 family protein compare
HMPREF1058_RS06165 -2.5 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS10820 -2.5 -13.1 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS16760 -2.5 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS05145 -2.5 -7.0 ATP-binding protein compare
HMPREF1058_RS13970 -2.5 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS07670 -2.4 -3.1 HAMP domain-containing histidine kinase compare
HMPREF1058_RS06330 -2.4 -4.7 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS01650 -2.4 -4.1 hypothetical protein compare
HMPREF1058_RS04015 -2.4 -7.7 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS08295 -2.4 -5.8 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS15435 -2.4 -7.3 hypothetical protein compare
HMPREF1058_RS12705 -2.3 -6.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS09685 -2.3 -10.8 tetratricopeptide repeat protein compare
HMPREF1058_RS02715 -2.3 -11.3 DeoR/GlpR transcriptional regulator compare
HMPREF1058_RS16070 -2.3 -6.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18695 -2.2 -2.4 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS01390 -2.2 -5.0 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS12505 -2.2 -3.3 RNA polymerase factor sigma-54 compare
HMPREF1058_RS07325 -2.2 -8.3 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS11925 -2.2 -1.7 DUF2975 domain-containing protein compare
HMPREF1058_RS17970 -2.2 -4.7 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS14555 -2.1 -2.3 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS10835 -2.1 -6.5 UDP-galactopyranose mutase compare
HMPREF1058_RS18265 -2.1 -2.8 aspartate 1-decarboxylase compare
HMPREF1058_RS01665 -2.1 -2.4 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS17960 -2.1 -8.1 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS11920 -2.1 -8.0 DUF2975 domain-containing protein compare
HMPREF1058_RS14380 -2.1 -4.1 AAA family ATPase compare
HMPREF1058_RS14035 -2.1 -1.1 hypothetical protein compare
HMPREF1058_RS02525 -2.0 -5.3 glutamate formimidoyltransferase compare
HMPREF1058_RS10840 -2.0 -1.9 hypothetical protein compare
HMPREF1058_RS16690 -2.0 -6.6 NTP transferase domain-containing protein compare
HMPREF1058_RS16845 -2.0 -3.6 SurA N-terminal domain-containing protein compare
HMPREF1058_RS15640 -2.0 -5.9 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS03970 -2.0 -1.3 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS15660 -2.0 -10.3 galactokinase compare
HMPREF1058_RS17955 -2.0 -6.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS07330 -2.0 -11.0 efflux RND transporter permease subunit compare
HMPREF1058_RS17130 -2.0 -1.7 tetratricopeptide repeat protein compare
HMPREF1058_RS14385 -1.9 -9.5 DUF4435 domain-containing protein compare
HMPREF1058_RS07440 -1.9 -5.1 aspartate--ammonia ligase compare
HMPREF1058_RS05790 -1.9 -2.0 hypothetical protein compare
HMPREF1058_RS09180 -1.9 -5.9 hypothetical protein compare
HMPREF1058_RS03535 -1.9 -1.6 UvrD-helicase domain-containing protein compare
HMPREF1058_RS10920 -1.9 -2.6 viroplasmin family protein compare
HMPREF1058_RS14285 -1.9 -2.2 DUF5056 domain-containing protein compare
HMPREF1058_RS02750 -1.9 -2.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06410 -1.9 -2.2 elongation factor 4 compare
HMPREF1058_RS03980 -1.8 -0.9 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS00590 -1.8 -2.8 hypothetical protein compare
HMPREF1058_RS14465 -1.8 -1.8 enoyl-ACP reductase compare
HMPREF1058_RS14590 -1.8 -1.9 AraC family transcriptional regulator compare
HMPREF1058_RS03290 -1.8 -2.2 thiamine phosphate synthase compare
HMPREF1058_RS10255 -1.8 -2.0 hypothetical protein compare
HMPREF1058_RS06225 -1.8 -3.0 pyridoxal phosphate-dependent aminotransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Rhamnogalacturonan from soy bean pectic fibre in Phocaeicola vulgatus CL09T03C04

For carbon source Rhamnogalacturonan from soy bean pectic fibre across organisms