Experiment set1IT044 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chlorite 0.08 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.1 -4.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -4.0 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4352 -3.5 -5.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4072 -2.6 -8.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3667 -2.5 -2.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3505 -2.1 -3.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2217 -2.1 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4075 -2.0 -6.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2473 -1.9 -2.3 Major outer membrane lipoprotein I compare
Pf6N2E2_4162 -1.9 -4.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_6140 -1.8 -1.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3198 -1.8 -2.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5508 -1.7 -2.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4074 -1.7 -11.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3351 -1.6 -4.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3264 -1.5 -2.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4353 -1.4 -7.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5527 -1.4 -2.1 Cold shock protein CspC compare
Pf6N2E2_2025 -1.4 -6.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_4362 -1.4 -5.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3666 -1.3 -4.3 InaA protein compare
Pf6N2E2_2264 -1.3 -3.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3062 -1.3 -4.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2156 -1.3 -2.4 Putative polyketide synthase (Fragment) compare
Pf6N2E2_5785 -1.2 -3.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2325 -1.2 -5.3 Recombination protein RecR compare
Pf6N2E2_2285 -1.2 -2.1 FIG00954079: hypothetical protein compare
Pf6N2E2_2756 -1.2 -6.7 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5406 -1.1 -2.7 FIG00958224: hypothetical protein compare
Pf6N2E2_5633 -1.1 -9.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5761 -1.1 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4197 -1.1 -6.5 DNA recombination and repair protein RecF compare
Pf6N2E2_5156 -1.1 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5990 -1.1 -1.7 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3199 -1.1 -5.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5428 -1.0 -4.8 DNA recombination and repair protein RecO compare
Pf6N2E2_2277 -1.0 -2.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3460 -1.0 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2753 -1.0 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_4372 -1.0 -4.2 FIG00460773: hypothetical protein compare
Pf6N2E2_4624 -0.9 -1.2 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2121 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_5425 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_3240 -0.9 -1.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2549 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_3908 -0.9 -5.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4204 -0.9 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4273 -0.9 -4.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_1325 -0.9 -2.7 FIG00954773: hypothetical protein compare
Pf6N2E2_3611 -0.9 -1.8 HflC protein compare
Pf6N2E2_1656 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_955 -0.8 -3.1 FIG00953508: hypothetical protein compare
Pf6N2E2_4206 -0.8 -2.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2630 -0.8 -4.7 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) conserved
Pf6N2E2_1691 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_3060 -0.8 -2.6 Outer membrane protein H precursor compare
Pf6N2E2_552 -0.8 -2.1 Uncharacterized protein ImpF compare
Pf6N2E2_2527 -0.8 -3.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2707 -0.8 -2.3 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4073 -0.8 -3.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_43 -0.8 -3.4 Histidine permease YuiF compare
Pf6N2E2_3461 -0.8 -0.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2629 -0.8 -5.3 Phenylalanine hydroxylase transcriptional activator PhhR conserved
Pf6N2E2_423 -0.8 -1.4 Putative phosphatase YfbT compare
Pf6N2E2_4071 -0.7 -2.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_888 -0.7 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2081 -0.7 -1.1 putative exported protein compare
Pf6N2E2_4494 -0.7 -2.2 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3696 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_1652 -0.7 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4205 -0.7 -2.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3370 -0.7 -5.5 DNA repair protein RecN compare
Pf6N2E2_1040 -0.7 -1.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3338 -0.7 -1.8 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2065 -0.7 -2.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3899 -0.7 -4.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3641 -0.7 -2.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4803 -0.7 -1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_170 -0.7 -1.6 lipoprotein, putative compare
Pf6N2E2_1199 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_3021 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2010 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_1543 -0.7 -3.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4416 -0.7 -1.4 Tyrosine recombinase XerC compare
Pf6N2E2_2064 -0.7 -2.2 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1501 -0.7 -2.3 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_2940 -0.7 -2.9 OmpA family protein compare
Pf6N2E2_6022 -0.6 -1.3 StbE replicon stabilization toxin compare
Pf6N2E2_241 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_5632 -0.6 -1.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5430 -0.6 -4.1 Transglycosylase, Slt family compare
Pf6N2E2_3695 -0.6 -2.6 Helix-turn-helix motif compare
Pf6N2E2_5841 -0.6 -1.0 GlcG protein compare
Pf6N2E2_2309 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_3876 -0.6 -2.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3625 -0.6 -4.3 Flagellar motor rotation protein MotA compare
Pf6N2E2_612 -0.6 -1.9 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_3349 -0.6 -1.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3346 -0.6 -3.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2088 -0.6 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3132 -0.6 -2.2 FIG00954548: hypothetical protein compare
Pf6N2E2_2798 -0.6 -2.4 Death on curing protein, Doc toxin compare
Pf6N2E2_613 -0.6 -1.2 lipoprotein, putative compare
Pf6N2E2_4615 -0.6 -1.6 type IV pili signal transduction protein PilI compare
Pf6N2E2_2003 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_4886 -0.6 -4.4 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5316 -0.6 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1099 -0.6 -1.0 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_1343 -0.6 -2.2 Transcriptional regulator compare
Pf6N2E2_5088 -0.6 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4984 -0.6 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1545 -0.6 -1.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5255 -0.6 -4.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_2218 -0.6 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5768 -0.6 -2.1 DNA recombination-dependent growth factor C compare
Pf6N2E2_81 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_546 -0.6 -1.2 FIG00966904: hypothetical protein compare
Pf6N2E2_6095 -0.6 -1.2 tRNA-Asn-GTT compare
Pf6N2E2_3100 -0.6 -1.8 FIG00953063: hypothetical protein compare
Pf6N2E2_2074 -0.6 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_775 -0.6 -1.8 FIG00955061: hypothetical protein compare
Pf6N2E2_5445 -0.6 -2.7 Putative preQ0 transporter compare
Pf6N2E2_4612 -0.6 -3.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2357 -0.5 -2.2 Invasion protein iagA compare
Pf6N2E2_1074 -0.5 -1.5 FIG00953356: hypothetical protein compare
Pf6N2E2_3320 -0.5 -2.3 hypothetical protein compare
Pf6N2E2_3901 -0.5 -1.6 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_1339 -0.5 -1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_344 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_5017 -0.5 -3.2 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_4797 -0.5 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_865 -0.5 -1.5 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3829 -0.5 -2.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3770 -0.5 -1.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1392 -0.5 -2.3 sensor histidine kinase compare
Pf6N2E2_2068 -0.5 -3.2 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_1323 -0.5 -2.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5936 -0.5 -1.5 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_595 -0.5 -1.0 Arsenical resistance operon repressor compare
Pf6N2E2_3941 -0.5 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2469 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_440 -0.5 -1.5 FIG00954920: hypothetical protein compare
Pf6N2E2_698 -0.5 -1.4 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_3006 -0.5 -2.7 Phage tail/DNA circulation protein compare
Pf6N2E2_5902 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_1783 -0.5 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5188 -0.5 -2.3 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2646 -0.5 -0.6 FIG00953416: hypothetical protein compare
Pf6N2E2_330 -0.5 -1.9 Mesenchymal stem cell protein DSCD75 compare
Pf6N2E2_3325 -0.5 -1.8 ABC transporter, ATP-binding protein compare
Pf6N2E2_2900 -0.5 -2.2 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2293 -0.5 -3.0 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf6N2E2_5331 -0.5 -2.9 ATPase, AFG1 family compare
Pf6N2E2_4691 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_2905 -0.5 -1.9 CoA transferase, CAIB/BAIF family compare
Pf6N2E2_1024 -0.5 -1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_1663 -0.5 -2.2 2-keto-3-deoxy-L-fuconate dehydrogenase compare
Pf6N2E2_2274 -0.5 -2.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2965 -0.5 -1.8 FIG00955308: hypothetical protein compare
Pf6N2E2_906 -0.5 -1.2 ISPpu14, transposase Orf2 compare
Pf6N2E2_331 -0.5 -1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_4531 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_3872 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_868 -0.5 -0.9 Transcriptional regulator, HxlR family compare
Pf6N2E2_1383 -0.5 -2.3 YD repeat protein compare
Pf6N2E2_4351 -0.5 -3.3 Predicted signal transduction protein compare
Pf6N2E2_5756 -0.5 -1.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_504 -0.5 -1.1 DNA-binding response regulator compare
Pf6N2E2_3624 -0.5 -3.1 Flagellar motor rotation protein MotB compare
Pf6N2E2_4474 -0.5 -2.9 FIG006231: RNA-binding protein compare
Pf6N2E2_3326 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_1605 -0.5 -3.0 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_338 -0.5 -1.1 Transcriptional regulator, AraC family compare
Pf6N2E2_2688 -0.5 -1.4 YD repeat protein compare
Pf6N2E2_1126 -0.5 -2.2 Two-component system regulatory protein compare
Pf6N2E2_4150 -0.5 -1.4 probable exported protein YPO0432 compare
Pf6N2E2_4609 -0.5 -1.5 UPF0301 protein YqgE compare
Pf6N2E2_1959 -0.5 -1.2 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_2922 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_5389 -0.5 -3.5 UPF0246 protein YaaA compare
Pf6N2E2_1840 -0.5 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5738 -0.4 -3.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_5413 -0.4 -2.1 Glutaredoxin NrdH compare
Pf6N2E2_3478 -0.4 -2.3 Adenosine deaminase (EC 3.5.4.4) compare
Pf6N2E2_417 -0.4 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1153 -0.4 -1.5 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_1606 -0.4 -2.3 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3539 -0.4 -1.4 FIG00955840: hypothetical protein compare
Pf6N2E2_1091 -0.4 -1.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_469 -0.4 -1.4 lipoprotein, putative compare
Pf6N2E2_156 -0.4 -1.2 Carbon storage regulator compare
Pf6N2E2_1895 -0.4 -2.7 PQQ-dependent oxidoreductase, gdhB family compare
Pf6N2E2_2201 -0.4 -1.9 Transmembrane regulator protein PrtR compare
Pf6N2E2_4684 -0.4 -2.4 hypothetical protein compare
Pf6N2E2_234 -0.4 -1.6 FIG00454312: hypothetical protein compare
Pf6N2E2_5943 -0.4 -1.2 hypothetical protein compare
Pf6N2E2_5171 -0.4 -3.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4459 -0.4 -1.1 Transcriptional regulator, GntR family compare
Pf6N2E2_913 -0.4 -1.7 FIG00958137: hypothetical protein compare
Pf6N2E2_2470 -0.4 -2.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chlorite across organisms