Experiment set1IT044 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS22015 +1.9 3.0 DNA-binding protein compare
HSERO_RS10765 +1.7 5.8 hypothetical protein compare
HSERO_RS00965 +1.7 1.9 trehalose-phosphatase compare
HSERO_RS10200 +1.4 4.7 flagellar basal body rod protein FlgF compare
HSERO_RS17095 +1.4 1.7 antitoxin compare
HSERO_RS04135 +1.4 2.9 amidohydrolase compare
HSERO_RS06935 +1.3 1.9 RNA-binding protein compare
HSERO_RS14320 +1.3 2.0 FmdB family transcriptional regulator compare
HSERO_RS03300 +1.3 2.1 molybdenum cofactor biosynthesis protein MoaC compare
HSERO_RS13885 +1.2 9.5 histidine kinase compare
HSERO_RS18230 +1.2 3.0 pilus assembly protein compare
HSERO_RS18875 +1.2 1.4 ATPase compare
HSERO_RS10305 +1.2 3.8 flagellar motor switch protein FliG compare
HSERO_RS10315 +1.1 3.1 flagellar hook-basal body protein FliE compare
HSERO_RS02735 +1.1 1.3 hypothetical protein compare
HSERO_RS20080 +1.1 1.7 hypothetical protein compare
HSERO_RS10190 +1.1 3.5 flagellar basal body rod modification protein FlgD compare
HSERO_RS18845 +1.1 2.4 hypothetical protein compare
HSERO_RS09085 +1.1 1.8 LysR family transcriptional regulator compare
HSERO_RS14935 +1.1 4.1 hypothetical protein compare
HSERO_RS09835 +1.1 1.8 hypothetical protein compare
HSERO_RS10205 +1.1 5.3 flagellar basal body rod protein FlgG compare
HSERO_RS19490 +1.0 1.4 hypothetical protein compare
HSERO_RS07025 +1.0 2.9 ATP-dependent Clp protease ClpS compare
HSERO_RS06655 +1.0 2.1 hypothetical protein compare
HSERO_RS20980 +1.0 3.5 oxidoreductase compare
HSERO_RS10160 +1.0 5.2 flagellar biosynthesis sigma factor compare
HSERO_RS05435 +1.0 6.9 hemolysin protein compare
HSERO_RS01325 +1.0 2.8 cation/multidrug efflux protein compare
HSERO_RS18090 +1.0 0.7 II family cellulose-binding protein compare
HSERO_RS09420 +1.0 3.9 HAD family hydrolase compare
HSERO_RS09945 +1.0 3.0 sugar transporter compare
HSERO_RS02475 +1.0 3.3 tRNA-Gly compare
HSERO_RS02450 +0.9 1.7 arsenate reductase compare
HSERO_RS20610 +0.9 1.6 phenylacetate-CoA oxygenase subunit PaaA compare
HSERO_RS10310 +0.9 4.8 flagellar M-ring protein FliF compare
HSERO_RS16035 +0.9 2.5 cytochrome C oxidase compare
HSERO_RS23295 +0.9 1.9 transcription factor compare
HSERO_RS18515 +0.9 2.4 membrane protein compare
HSERO_RS13890 +0.9 3.2 LuxR family transcriptional regulator compare
HSERO_RS01090 +0.9 1.3 hypothetical protein compare
HSERO_RS10195 +0.9 5.0 flagellar hook protein FlgE compare
HSERO_RS08535 +0.9 3.3 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS19090 +0.9 1.5 C4-dicarboxylate ABC transporter compare
HSERO_RS10185 +0.9 4.7 flagellar basal body rod protein FlgC compare
HSERO_RS21990 +0.9 1.1 hypothetical protein compare
HSERO_RS10285 +0.9 5.1 flagellar hook-length control protein compare
HSERO_RS11320 +0.9 1.8 hypothetical protein compare
HSERO_RS03085 +0.9 3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS14605 +0.9 3.1 hypothetical protein compare
HSERO_RS06130 +0.9 1.3 4-hydroxybenzoyl-CoA thioesterase compare
HSERO_RS05855 +0.9 3.9 flagellar motor protein MotA compare
HSERO_RS21570 +0.9 3.6 asparaginase compare
HSERO_RS06400 +0.8 2.5 LysR family transcriptional regulator compare
HSERO_RS03285 +0.8 1.5 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS08530 +0.8 3.5 glycine/betaine ABC transporter permease compare
HSERO_RS07525 +0.8 2.1 ABC transporter permease compare
HSERO_RS00410 +0.8 1.3 phosphoheptose isomerase compare
HSERO_RS11480 +0.8 2.3 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
HSERO_RS08775 +0.8 2.5 membrane protein compare
HSERO_RS13715 +0.8 1.7 hypothetical protein compare
HSERO_RS18630 +0.8 1.0 hemerythrin compare
HSERO_RS13560 +0.8 2.7 transcriptional regulator compare
HSERO_RS07890 +0.8 0.9 hypothetical protein compare
HSERO_RS14790 +0.8 2.9 membrane protein compare
HSERO_RS00435 +0.8 3.8 glutathione synthetase compare
HSERO_RS06015 +0.8 1.1 hisitidine kinase compare
HSERO_RS02365 +0.8 1.7 hypothetical protein compare
HSERO_RS10215 +0.8 3.8 flagellar P-ring protein FlgI compare
HSERO_RS10120 +0.8 1.5 chemotaxis protein CheD compare
HSERO_RS02780 +0.8 1.5 hypothetical protein compare
HSERO_RS17220 +0.8 1.7 membrane protein compare
HSERO_RS03320 +0.8 3.6 ketosteroid isomerase compare
HSERO_RS08165 +0.8 2.6 DNA-binding protein compare
HSERO_RS06330 +0.8 3.3 transcriptional regulator compare
HSERO_RS03810 +0.8 2.2 hypothetical protein compare
HSERO_RS14985 +0.8 4.6 transcriptional regulator compare
HSERO_RS19885 +0.8 2.2 AsnC family transcriptional regulator compare
HSERO_RS07595 +0.8 2.2 DNA mismatch repair protein MutT compare
HSERO_RS18675 +0.8 1.4 hypothetical protein compare
HSERO_RS01880 +0.8 1.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS21735 +0.8 1.6 hypothetical protein compare
HSERO_RS13450 +0.7 1.4 malonate decarboxylase subunit gamma compare
HSERO_RS14855 +0.7 4.6 helicase compare
HSERO_RS12985 +0.7 1.6 L-lactate dehydrogenase compare
HSERO_RS01505 +0.7 2.4 transketolase compare
HSERO_RS10145 +0.7 4.9 flagellar biosynthesis protein FlhA compare
HSERO_RS22305 +0.7 3.0 oxidoreductase compare
HSERO_RS18935 +0.7 3.7 LysR family transcriptional regulator compare
HSERO_RS19505 +0.7 2.4 membrane protein compare
HSERO_RS10175 +0.7 2.6 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS21480 +0.7 0.8 transcriptional regulator compare
HSERO_RS06640 +0.7 1.9 N-carbamoylsarcosine amidase compare
HSERO_RS06960 +0.7 1.1 chemotaxis protein CheY compare
HSERO_RS13040 +0.7 1.4 hypothetical protein compare
HSERO_RS19240 +0.7 3.8 arginine ABC transporter ATP-binding protein compare
HSERO_RS03520 +0.7 1.3 aminoglycoside phosphotransferase compare
HSERO_RS03550 +0.7 1.4 glyoxalase I compare
HSERO_RS07675 +0.7 2.2 multidrug DMT transporter compare
HSERO_RS22360 +0.7 2.6 lauroyl acyltransferase compare
HSERO_RS23545 +0.7 1.4 sodium transporter compare
HSERO_RS15280 +0.7 2.7 secretion protein compare
HSERO_RS21095 +0.7 4.1 UDP-glucose 4-epimerase compare
HSERO_RS05470 +0.7 3.6 permease compare
HSERO_RS17530 +0.7 2.3 RpiR family transcriptional regulator compare
HSERO_RS03385 +0.7 2.5 flavin reductase compare
HSERO_RS00905 +0.7 4.2 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) compare
HSERO_RS14020 +0.7 1.8 LysR family transcriptional regulator compare
HSERO_RS08485 +0.7 1.6 hypothetical protein compare
HSERO_RS01180 +0.7 3.6 acetyl-CoA acetyltransferase compare
HSERO_RS02575 +0.7 2.3 diguanylate cyclase compare
HSERO_RS00220 +0.7 0.8 hypothetical protein compare
HSERO_RS15055 +0.7 1.4 membrane protein compare
HSERO_RS01315 +0.7 1.2 transcriptional regulator compare
HSERO_RS11695 +0.7 2.0 rhodanese compare
HSERO_RS11655 +0.7 1.4 hemerythrin compare
HSERO_RS13800 +0.7 1.8 glycosyl transferase family 1 compare
HSERO_RS18455 +0.7 1.1 phosphoglycolate phosphatase compare
HSERO_RS02445 +0.7 2.2 proteinase inhibitor compare
HSERO_RS20615 +0.6 0.7 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS01825 +0.6 3.0 RNA pyrophosphohydrolase compare
HSERO_RS08770 +0.6 2.4 membrane protein compare
HSERO_RS21540 +0.6 1.6 alkyl hydroperoxide reductase subunit C compare
HSERO_RS03510 +0.6 1.8 proline aminopeptidase P II compare
HSERO_RS08200 +0.6 2.1 alkanesulfonate monooxygenase compare
HSERO_RS09745 +0.6 1.6 chemotaxis protein CheY compare
HSERO_RS15650 +0.6 1.5 hypothetical protein compare
HSERO_RS00900 +0.6 1.0 L-proline ABC transporter, ATPase component 2 (from data) compare
HSERO_RS12705 +0.6 1.1 metallophosphatase compare
HSERO_RS14375 +0.6 1.3 IscN protein compare
HSERO_RS06680 +0.6 2.0 6-hydroxynicotinate 3-monooxygenase compare
HSERO_RS08420 +0.6 1.0 hypothetical protein compare
HSERO_RS08990 +0.6 1.9 heat shock protein 90 compare
HSERO_RS19970 +0.6 2.3 branched-chain amino acid ABC transporter compare
HSERO_RS14970 +0.6 3.0 flagellar motor protein MotB compare
HSERO_RS11200 +0.6 2.3 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS19245 +0.6 2.0 glutamate/aspartate transporter permease GltK compare
HSERO_RS00810 +0.6 0.9 glutaredoxin compare
HSERO_RS10140 +0.6 3.0 flagellar biosynthesis protein FlhB compare
HSERO_RS07380 +0.6 0.8 hypothetical protein compare
HSERO_RS21020 +0.6 2.1 imidazole glycerol phosphate synthase compare
HSERO_RS03965 +0.6 3.0 hypothetical protein compare
HSERO_RS08745 +0.6 1.5 membrane protein compare
HSERO_RS15940 +0.6 1.9 peptide ABC transporter substrate-binding protein compare
HSERO_RS13675 +0.6 0.6 histidine kinase compare
HSERO_RS12065 +0.6 2.2 hypothetical protein compare
HSERO_RS07010 +0.6 1.2 pseudouridine synthase compare
HSERO_RS05700 +0.6 3.5 LysR family transcriptional regulator compare
HSERO_RS23280 +0.6 2.6 hypothetical protein compare
HSERO_RS08790 +0.6 0.9 hypothetical protein compare
HSERO_RS12965 +0.6 1.7 phytoene synthase compare
HSERO_RS11995 +0.6 1.6 universal stress protein compare
HSERO_RS05020 +0.6 1.6 transcriptional regulator compare
HSERO_RS10295 +0.6 2.1 ATP synthase compare
HSERO_RS09370 +0.6 2.3 hypothetical protein compare
HSERO_RS02130 +0.6 2.1 thiazole synthase compare
HSERO_RS10065 +0.6 1.1 hypothetical protein compare
HSERO_RS19255 +0.6 2.0 ABC transporter compare
HSERO_RS12145 +0.6 1.6 hypothetical protein compare
HSERO_RS12270 +0.6 1.4 ABC transporter compare
HSERO_RS07345 +0.6 0.9 hypothetical protein compare
HSERO_RS21215 +0.6 1.7 hypothetical protein compare
HSERO_RS06800 +0.6 1.5 hypothetical protein compare
HSERO_RS21200 +0.6 2.6 glycosyl transferase family 1 compare
HSERO_RS03625 +0.6 2.4 nicotinamidase-like protein compare
HSERO_RS21730 +0.6 2.2 short-chain dehydrogenase compare
HSERO_RS23455 +0.6 0.8 methylcrotonoyl-CoA carboxylase compare
HSERO_RS21500 +0.6 2.2 hypothetical protein compare
HSERO_RS00425 +0.6 2.6 ammonia channel protein compare
HSERO_RS01160 +0.6 1.7 LysR family transcriptional regulator compare
HSERO_RS12460 +0.6 1.2 light-regulated signal transduction histidine kinase compare
HSERO_RS22995 +0.6 1.6 antitoxin compare
HSERO_RS15355 +0.6 1.6 hypothetical protein compare
HSERO_RS19250 +0.6 2.3 glutamate ABC transporter permease compare
HSERO_RS05630 +0.6 0.7 AsnC family transcriptional regulator compare
HSERO_RS11105 +0.6 0.7 beta-lactamase compare
HSERO_RS06700 +0.6 1.6 LuxR family transcriptional regulator compare
HSERO_RS22380 +0.6 1.7 hypothetical protein compare
HSERO_RS21700 +0.5 2.1 SpoVR family protein compare
HSERO_RS18245 +0.5 1.6 lipase compare
HSERO_RS21220 +0.5 4.1 hypothetical protein compare
HSERO_RS01185 +0.5 1.5 amino acid ABC transporter compare
HSERO_RS06710 +0.5 1.7 ferredoxin compare
HSERO_RS02005 +0.5 1.6 membrane protein compare
HSERO_RS07545 +0.5 2.3 2-dehydro-3-deoxygluconokinase compare
HSERO_RS14000 +0.5 1.2 hypothetical protein compare
HSERO_RS23635 +0.5 1.9 urease accessory protein UreG compare
HSERO_RS23655 +0.5 1.1 phosphonate ABC transporter permease compare
HSERO_RS10275 +0.5 1.7 flagellar motor switch protein FliM compare
HSERO_RS12575 +0.5 1.9 ethanolamine ammonia-lyase small subunit compare
HSERO_RS18540 +0.5 1.8 3-ketoacyl-ACP reductase compare
HSERO_RS14770 +0.5 1.9 GTP-binding protein HflX compare
HSERO_RS01570 +0.5 1.5 esterase compare
HSERO_RS03960 +0.5 2.4 hypothetical protein compare
HSERO_RS21410 +0.5 1.8 NAD-dependent dehydratase compare
HSERO_RS03545 +0.5 1.7 hypothetical protein compare
HSERO_RS06750 +0.5 2.0 sensor histidine kinase compare
HSERO_RS06160 +0.5 2.4 hypothetical protein compare
HSERO_RS17265 +0.5 2.5 glucosyltransferase MdoH compare
HSERO_RS12990 +0.5 0.9 aankyrin compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms