Experiment set1IT044 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Threonine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.8 -4.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14365 -6.6 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -6.4 -4.4 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.1 -4.2 3-isopropylmalate dehydratase compare
RR42_RS30655 -6.0 -5.8 LysR family transcriptional regulator compare
RR42_RS19005 -5.8 -4.0 3-dehydroquinate synthase compare
RR42_RS14320 -5.2 -6.1 O-succinylhomoserine sulfhydrylase compare
RR42_RS06485 -5.1 -8.4 chorismate synthase compare
RR42_RS16265 -5.0 -4.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS25930 -4.9 -10.0 glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) compare
RR42_RS13910 -4.8 -8.8 glutamate racemase compare
RR42_RS16250 -4.8 -7.3 sulfate adenylyltransferase compare
RR42_RS05860 -4.6 -5.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS19010 -4.5 -8.7 shikimate kinase compare
RR42_RS07555 -4.5 -3.1 potassium transporter Kup compare
RR42_RS18295 -4.5 -12.8 anthranilate synthase component I compare
RR42_RS14400 -4.5 -4.3 isopropylmalate isomerase compare
RR42_RS04475 -4.4 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16280 -4.1 -7.0 transcriptional regulator compare
RR42_RS01845 -4.0 -2.5 glycerol-3-phosphate dehydrogenase compare
RR42_RS18300 -4.0 -6.3 anthranilate synthase subunit II compare
RR42_RS01160 -3.9 -8.0 homoserine O-acetyltransferase compare
RR42_RS16245 -3.8 -5.8 uroporphyrin-III methyltransferase compare
RR42_RS30660 -3.8 -9.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16255 -3.7 -10.0 sulfate adenylyltransferase compare
RR42_RS33355 -3.6 -6.4 membrane protein compare
RR42_RS14385 -3.6 -5.5 3-isopropylmalate dehydrogenase compare
RR42_RS17645 -3.5 -8.4 shikimate dehydrogenase compare
RR42_RS16270 -3.4 -9.5 sulfite reductase compare
RR42_RS14360 -3.4 -2.0 tryptophan synthase subunit alpha compare
RR42_RS18990 -3.3 -18.1 glutamate synthase compare
RR42_RS20195 -3.1 -1.3 ATPase F0F1 compare
RR42_RS07605 -2.9 -6.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS12925 -2.9 -2.9 ATPase compare
RR42_RS33255 -2.8 -4.7 protein-tyrosine phosphatase compare
RR42_RS04535 -2.8 -4.1 cysteine synthase compare
RR42_RS04470 -2.7 -6.9 prephenate dehydrogenase compare
RR42_RS18855 -2.7 -4.4 preprotein translocase compare
RR42_RS18985 -2.7 -6.5 glutamate synthase compare
RR42_RS16275 -2.6 -4.0 membrane protein compare
RR42_RS28300 -2.5 -6.6 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) compare
RR42_RS01290 -2.5 -4.6 thiamine biosynthesis protein ThiC compare
RR42_RS17720 -2.5 -2.6 sugar kinase compare
RR42_RS04460 -2.4 -4.7 chorismate mutase compare
RR42_RS28295 -2.3 -10.3 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) compare
RR42_RS06095 -2.3 -3.5 hypothetical protein compare
RR42_RS33250 -2.3 -7.5 tyrosine protein kinase compare
RR42_RS05990 -2.2 -7.3 aromatic amino acid aminotransferase compare
RR42_RS12185 -2.2 -2.2 LysR family transcriptional regulator compare
RR42_RS13905 -2.2 -3.7 fumarate hydratase compare
RR42_RS33260 -2.1 -6.8 multidrug MFS transporter compare
RR42_RS17050 -2.1 -4.9 phosphoribosylglycinamide formyltransferase compare
RR42_RS12980 -2.0 -7.0 chemotaxis protein CheY compare
RR42_RS26900 -2.0 -2.8 enoyl-CoA hydratase compare
RR42_RS12175 -2.0 -11.1 malate synthase compare
RR42_RS01920 -2.0 -3.6 protoheme IX farnesyltransferase compare
RR42_RS25200 -1.9 -5.5 TetR family transcriptional regulator compare
RR42_RS33240 -1.9 -11.4 GDP-L-fucose synthase compare
RR42_RS14860 -1.8 -3.2 hypothetical protein compare
RR42_RS15000 -1.8 -3.1 GTP cyclohydrolase compare
RR42_RS35140 -1.8 -2.6 2-hydroxylaminobenzoate mutase compare
RR42_RS03080 -1.8 -3.6 recombinase RecA compare
RR42_RS03095 -1.7 -1.5 succinyl-CoA synthetase subunit beta compare
RR42_RS20205 -1.7 -2.6 chromosome partitioning protein compare
RR42_RS33245 -1.6 -7.0 mannose-1-phosphate guanyltransferase compare
RR42_RS30640 -1.6 -5.7 DNA mismatch repair protein MutT compare
RR42_RS16240 -1.6 -1.2 cobalamin biosynthesis protein CbiX compare
RR42_RS36130 -1.6 -7.4 phytanoyl-CoA dioxygenase compare
RR42_RS28305 -1.6 -6.1 L-threonine:H+ symporter (from data) compare
RR42_RS34215 -1.6 -1.6 ferredoxin compare
RR42_RS18850 -1.5 -2.2 preprotein translocase subunit TatC compare
RR42_RS33235 -1.5 -7.4 GDP-mannose 4,6-dehydratase compare
RR42_RS17060 -1.5 -10.8 histidine kinase compare
RR42_RS26905 -1.5 -6.0 methylcrotonoyl-CoA carboxylase compare
RR42_RS15895 -1.5 -5.1 uroporphyrinogen III methyltransferase compare
RR42_RS00940 -1.5 -6.2 biotin synthase compare
RR42_RS05420 -1.4 -5.9 membrane protein compare
RR42_RS33210 -1.4 -3.9 teichoic acid biosynthesis protein compare
RR42_RS12040 -1.4 -8.0 MFS transporter compare
RR42_RS07365 -1.4 -2.9 pyruvate dehydrogenase compare
RR42_RS16260 -1.4 -0.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS02705 -1.4 -2.1 Holliday junction DNA helicase RuvA compare
RR42_RS14790 -1.4 -6.3 cobalamin biosynthesis protein CobD compare
RR42_RS08805 -1.4 -2.4 nitrate reductase compare
RR42_RS11770 -1.4 -1.0 cyclase compare
RR42_RS04895 -1.4 -7.3 serine/threonine protein phosphatase compare
RR42_RS12550 -1.4 -3.2 hypothetical protein compare
RR42_RS18270 -1.4 -3.4 murein transglycosylase compare
RR42_RS14235 -1.4 -1.7 hypothetical protein compare
RR42_RS17730 -1.3 -2.6 hypothetical protein compare
RR42_RS19895 -1.3 -1.9 elongation factor GreAB compare
RR42_RS01780 -1.3 -5.9 glutathione synthetase compare
RR42_RS08945 -1.3 -1.3 hypothetical protein compare
RR42_RS02045 -1.3 -8.1 GTPase compare
RR42_RS15890 -1.3 -6.1 heme biosynthesis protein HemY compare
RR42_RS21000 -1.3 -2.8 glycosyl transferase compare
RR42_RS05775 -1.2 -3.9 hypothetical protein compare
RR42_RS15410 -1.2 -3.8 membrane protein compare
RR42_RS01775 -1.1 -4.1 glutamate--cysteine ligase compare
RR42_RS32975 -1.1 -1.5 LysR family transcriptional regulator compare
RR42_RS13040 -1.1 -3.4 iron transporter compare
RR42_RS12985 -1.1 -5.1 histidine kinase compare
RR42_RS23565 -1.1 -1.0 flagellar motor switch protein G compare
RR42_RS06020 -1.1 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS04015 -1.1 -1.1 RNA polymerase sigma factor compare
RR42_RS36105 -1.1 -2.7 MarR family transcriptional regulator compare
RR42_RS32600 -1.1 -2.6 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS07565 -1.1 -5.4 transcription accessory protein compare
RR42_RS19685 -1.1 -1.8 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS11655 -1.1 -1.6 heat-shock protein Hsp20 compare
RR42_RS15035 -1.1 -3.6 ZIP zinc transporter compare
RR42_RS17055 -1.0 -3.9 LuxR family transcriptional regulator compare
RR42_RS06895 -1.0 -1.8 hypothetical protein compare
RR42_RS20070 -1.0 -7.7 glycine dehydrogenase compare
RR42_RS17565 -1.0 -6.8 LysR family transcriptional regulator compare
RR42_RS23460 -1.0 -1.6 alpha/beta hydrolase compare
RR42_RS07360 -1.0 -3.0 ATPase compare
RR42_RS22590 -1.0 -0.8 organic hydroperoxide resistance protein compare
RR42_RS36010 -1.0 -2.3 peptidase compare
RR42_RS19485 -1.0 -1.1 general secretion pathway protein GspH compare
RR42_RS02065 -1.0 -1.4 phosphate starvation-inducible protein PsiF compare
RR42_RS34815 -1.0 -3.3 diguanylate cyclase compare
RR42_RS17390 -1.0 -3.8 ATP-dependent DNA helicase RecG compare
RR42_RS36920 -1.0 -2.3 TetR family transcriptional regulator compare
RR42_RS06545 -1.0 -1.8 thioesterase compare
RR42_RS24040 -1.0 -2.9 hypothetical protein compare
RR42_RS07150 -1.0 -1.1 hypothetical protein compare
RR42_RS18995 -1.0 -4.0 transposase compare
RR42_RS12615 -1.0 -2.0 LexA family transcriptional regulator compare
RR42_RS17560 -1.0 -4.8 Fur family transcriptional regulator compare
RR42_RS31900 -1.0 -1.5 short-chain dehydrogenase compare
RR42_RS18310 -0.9 -0.8 indole-3-glycerol-phosphate synthase compare
RR42_RS12180 -0.9 -3.0 haloacid dehalogenase compare
RR42_RS11635 -0.9 -2.4 signal transduction protein compare
RR42_RS18825 -0.9 -3.0 ubiquinol-cytochrome C reductase compare
RR42_RS00420 -0.9 -4.0 hypothetical protein compare
RR42_RS04710 -0.9 -2.9 50S rRNA methyltransferase compare
RR42_RS32590 -0.9 -1.3 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS09555 -0.9 -1.2 universal stress protein UspA compare
RR42_RS35875 -0.9 -5.7 UDP-galactose-4-epimerase compare
RR42_RS30250 -0.9 -2.5 peptide ABC transporter compare
RR42_RS24930 -0.9 -0.9 AraC family transcriptional regulator compare
RR42_RS04700 -0.9 -1.2 ribonuclease G compare
RR42_RS02590 -0.9 -1.7 amino acid ABC transporter ATP-binding protein compare
RR42_RS28400 -0.9 -2.1 CoA-transferase compare
RR42_RS10250 -0.9 -3.7 enoyl-CoA hydratase compare
RR42_RS09015 -0.9 -1.9 trigger factor compare
RR42_RS04980 -0.9 -1.3 hypothetical protein compare
RR42_RS01880 -0.9 -4.0 cytochrome oxidase subunit I compare
RR42_RS12305 -0.9 -0.9 hypothetical protein compare
RR42_RS19555 -0.9 -1.7 hypothetical protein compare
RR42_RS17105 -0.9 -5.0 Clp protease ClpX compare
RR42_RS01165 -0.9 -2.5 methionine biosynthesis protein MetW compare
RR42_RS19885 -0.8 -0.8 aminoglycoside transporter compare
RR42_RS12580 -0.8 -1.6 phosphate transport regulator compare
RR42_RS00805 -0.8 -1.7 membrane protein compare
RR42_RS19090 -0.8 -1.3 cytochrome C compare
RR42_RS06355 -0.8 -3.5 Fe-S cluster assembly protein HesB compare
RR42_RS02205 -0.8 -1.3 succinate dehydrogenase compare
RR42_RS01380 -0.8 -0.7 membrane protein compare
RR42_RS27145 -0.8 -2.3 hypothetical protein compare
RR42_RS15120 -0.8 -1.2 4-oxalocrotonate tautomerase compare
RR42_RS06250 -0.8 -1.0 dihydrodipicolinate synthase compare
RR42_RS07610 -0.8 -2.7 acetyl-CoA acetyltransferase compare
RR42_RS08365 -0.8 -3.2 hypothetical protein compare
RR42_RS00785 -0.8 -1.9 LuxR family transcriptional regulator compare
RR42_RS15225 -0.8 -1.1 RNA-binding protein compare
RR42_RS05465 -0.8 -5.2 2-isopropylmalate synthase compare
RR42_RS14880 -0.8 -1.4 hypothetical protein compare
RR42_RS08085 -0.8 -2.1 hypothetical protein compare
RR42_RS20005 -0.8 -2.5 hypothetical protein compare
RR42_RS03525 -0.8 -1.2 type VI secretion system effector compare
RR42_RS18020 -0.8 -2.4 ornithine acetyltransferase compare
RR42_RS06275 -0.8 -3.0 peptidylprolyl isomerase compare
RR42_RS15475 -0.8 -3.4 protein tolQ compare
RR42_RS09590 -0.8 -2.0 hypothetical protein compare
RR42_RS34945 -0.8 -1.9 bb3-type cytochrome oxidase subunit III compare
RR42_RS29040 -0.8 -2.8 histidyl-tRNA synthetase compare
RR42_RS09780 -0.8 -2.0 hypothetical protein compare
RR42_RS33215 -0.7 -4.5 transferase compare
RR42_RS12015 -0.7 -1.5 dihydrolipoamide acyltransferase compare
RR42_RS18820 -0.7 -3.3 cytochrome B compare
RR42_RS32595 -0.7 -3.1 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS21685 -0.7 -1.9 hypothetical protein compare
RR42_RS03630 -0.7 -0.9 cold-shock protein compare
RR42_RS27950 -0.7 -1.3 peptidylprolyl isomerase compare
RR42_RS10415 -0.7 -0.9 hypothetical protein compare
RR42_RS04250 -0.7 -1.6 chemotaxis protein CheY compare
RR42_RS07615 -0.7 -1.2 3-ketoacyl-ACP reductase compare
RR42_RS05500 -0.7 -0.9 preprotein translocase subunit SecG compare
RR42_RS07380 -0.7 -2.2 dihydrolipoamide dehydrogenase compare
RR42_RS26365 -0.7 -1.8 dienelactone hydrolase compare
RR42_RS02500 -0.7 -0.9 TetR family transcriptional regulator compare
RR42_RS19445 -0.7 -3.1 TetR family transcriptional regulator compare
RR42_RS24665 -0.7 -1.3 hypothetical protein compare
RR42_RS11220 -0.7 -2.5 peptide ABC transporter compare
RR42_RS11525 -0.7 -2.0 hypothetical protein compare
RR42_RS12055 -0.7 -2.1 acyltransferase compare
RR42_RS00300 -0.7 -2.1 kinase compare
RR42_RS22595 -0.7 -2.6 LysR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Threonine in Cupriavidus basilensis FW507-4G11

For carbon source L-Threonine across organisms