Experiment set1IT044 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Threonine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS20370 +1.6 2.3 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS20310 +1.2 1.5 copper-binding protein compare
RR42_RS06890 +1.1 1.8 hypothetical protein compare
RR42_RS32505 +1.1 3.1 sulfonate ABC transporter ATP-binding protein compare
RR42_RS03920 +1.1 2.2 rubredoxin compare
RR42_RS33815 +1.0 1.4 isochorismatase compare
RR42_RS34585 +1.0 2.1 LysR family transcriptional regulator compare
RR42_RS23230 +1.0 3.0 glycerate kinase compare
RR42_RS13830 +1.0 1.4 hypothetical protein compare
RR42_RS22355 +1.0 2.7 ModE family transcriptional regulator compare
RR42_RS05965 +1.0 2.2 malonic semialdehyde reductase compare
RR42_RS16910 +1.0 1.6 histidine utilization protein HutD compare
RR42_RS23365 +1.0 2.0 flagellar biosynthesis protein FliO compare
RR42_RS16335 +1.0 1.2 hypothetical protein compare
RR42_RS31020 +0.9 2.4 hypothetical protein compare
RR42_RS31330 +0.9 1.2 LysR family transcriptional regulator compare
RR42_RS36835 +0.9 2.5 cytochrome P450 compare
RR42_RS06000 +0.9 1.4 antibiotic biosynthesis monooxygenase compare
RR42_RS27160 +0.9 1.9 acetyl-CoA acetyltransferase compare
RR42_RS11460 +0.9 4.8 pyrroloquinoline quinone biosynthesis protein PqqB compare
RR42_RS16620 +0.9 2.8 hypothetical protein compare
RR42_RS32805 +0.9 1.9 damage-inducible protein compare
RR42_RS36570 +0.9 1.4 prevent-host-death protein compare
RR42_RS10980 +0.9 3.3 hydroxypyruvate isomerase compare
RR42_RS27095 +0.9 2.3 hypothetical protein compare
RR42_RS21470 +0.9 1.2 hypothetical protein compare
RR42_RS26275 +0.8 2.0 CopG family transcriptional regulator compare
RR42_RS30285 +0.8 2.0 amidohydrolase compare
RR42_RS11465 +0.8 3.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
RR42_RS32670 +0.8 1.4 phenol hydroxylase compare
RR42_RS33610 +0.8 2.8 ABC transporter ATP-binding protein compare
RR42_RS07995 +0.8 1.5 hypothetical protein compare
RR42_RS09375 +0.8 1.2 taurine dioxygenase compare
RR42_RS31790 +0.8 1.5 nitrite reductase compare
RR42_RS32895 +0.8 2.7 ABC transporter permease compare
RR42_RS01095 +0.8 1.8 membrane protein compare
RR42_RS29515 +0.8 2.3 hypothetical protein compare
RR42_RS07440 +0.8 1.9 hypothetical protein compare
RR42_RS33600 +0.8 1.3 oxidoreductase compare
RR42_RS30625 +0.8 3.0 cob(II)yrinic acid a,c-diamide reductase compare
RR42_RS14930 +0.8 1.4 biopolymer transporter ExbD compare
RR42_RS06880 +0.8 1.3 hypothetical protein compare
RR42_RS03665 +0.8 2.9 translation initiation factor IF-1 compare
RR42_RS12860 +0.8 2.0 pseudouridine synthase compare
RR42_RS31920 +0.8 1.4 acetyl-CoA acetyltransferase compare
RR42_RS06335 +0.8 1.3 cyclophilin compare
RR42_RS13620 +0.8 1.1 ferredoxin compare
RR42_RS34115 +0.8 1.9 hypothetical protein compare
RR42_RS36450 +0.8 1.0 acyl dehydratase compare
RR42_RS07240 +0.8 1.6 hypothetical protein compare
RR42_RS32645 +0.8 1.1 2-keto-4-pentenoate hydratase compare
RR42_RS06325 +0.7 0.7 serine O-acetyltransferase compare
RR42_RS32035 +0.7 1.7 short-chain dehydrogenase compare
RR42_RS25640 +0.7 1.4 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS31850 +0.7 2.0 2-keto-4-pentenoate hydratase compare
RR42_RS03185 +0.7 2.5 branched-chain amino acid permease compare
RR42_RS29335 +0.7 1.7 integrase compare
RR42_RS07920 +0.7 1.7 cyclophilin-like superfamily protein compare
RR42_RS04765 +0.7 1.3 3-oxoacyl-ACP reductase compare
RR42_RS24270 +0.7 2.7 hypothetical protein compare
RR42_RS09240 +0.7 1.0 MFS transporter compare
RR42_RS31240 +0.7 2.4 AMP-dependent synthetase compare
RR42_RS26080 +0.7 1.1 hypothetical protein compare
RR42_RS20810 +0.7 1.1 hypothetical protein compare
RR42_RS35445 +0.7 2.9 ArsR family transcriptional regulator compare
RR42_RS28155 +0.7 1.1 hypothetical protein compare
RR42_RS04850 +0.7 1.0 hypothetical protein compare
RR42_RS31830 +0.7 1.0 short-chain dehydrogenase compare
RR42_RS36890 +0.7 2.0 hypothetical protein compare
RR42_RS19755 +0.7 2.5 exonuclease compare
RR42_RS18350 +0.7 2.3 NADPH:quinone dehydrogenase compare
RR42_RS01705 +0.7 1.7 Fis family transcriptional regulator compare
RR42_RS02640 +0.7 3.1 membrane protein compare
RR42_RS01860 +0.7 1.4 amidophosphoribosyltransferase compare
RR42_RS31960 +0.6 1.5 biphenyl 2,3-dioxygenase compare
RR42_RS35295 +0.6 1.3 diguanylate cyclase compare
RR42_RS24790 +0.6 0.9 LysR family transcriptional regulator compare
RR42_RS36170 +0.6 2.1 hypothetical protein compare
RR42_RS01605 +0.6 2.2 hydrolase compare
RR42_RS15290 +0.6 1.9 cupin compare
RR42_RS29610 +0.6 1.0 cytochrome C2 compare
RR42_RS16675 +0.6 1.2 hypothetical protein compare
RR42_RS02950 +0.6 1.0 malonate decarboxylase subunit beta compare
RR42_RS13865 +0.6 1.2 hypothetical protein compare
RR42_RS19735 +0.6 1.8 hypothetical protein compare
RR42_RS20295 +0.6 1.9 alpha/beta hydrolase compare
RR42_RS05670 +0.6 1.0 urease subunit beta compare
RR42_RS31600 +0.6 1.9 hypothetical protein compare
RR42_RS24575 +0.6 1.8 endoribonuclease L-PSP compare
RR42_RS12315 +0.6 1.5 transcriptional regulator compare
RR42_RS18700 +0.6 1.2 membrane protein compare
RR42_RS19765 +0.6 1.6 arsenate reductase compare
RR42_RS32090 +0.6 1.2 hypothetical protein compare
RR42_RS36415 +0.6 1.6 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS15315 +0.6 3.3 MFS transporter compare
RR42_RS07155 +0.6 1.2 hypothetical protein compare
RR42_RS21850 +0.6 1.1 3-oxoadipate enol-lactonase compare
RR42_RS26350 +0.6 1.1 bleomycin resistance protein compare
RR42_RS17590 +0.6 0.8 16S rRNA methyltransferase compare
RR42_RS10270 +0.6 2.9 hypothetical protein compare
RR42_RS34265 +0.6 2.5 acetaldehyde dehydrogenase compare
RR42_RS04380 +0.6 2.4 LysR family transcriptional regulator compare
RR42_RS26715 +0.6 1.8 sulfonate ABC transporter substrate-binding protein compare
RR42_RS19750 +0.6 1.1 MBL fold metallo-hydrolase compare
RR42_RS32180 +0.6 2.8 tripartite tricarboxylate transporter TctB compare
RR42_RS17880 +0.6 0.8 hypothetical protein compare
RR42_RS34360 +0.6 2.1 transposase compare
RR42_RS27050 +0.6 2.5 transporter compare
RR42_RS25030 +0.6 1.3 ABC transporter permease compare
RR42_RS04275 +0.6 1.3 hypothetical protein compare
RR42_RS22635 +0.6 2.4 membrane protein compare
RR42_RS01420 +0.6 1.0 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS12250 +0.6 1.1 sulfate ABC transporter ATP-binding protein compare
RR42_RS28490 +0.6 2.1 hypothetical protein compare
RR42_RS21835 +0.6 1.7 muconate cycloisomerase compare
RR42_RS30430 +0.6 2.1 hypothetical protein compare
RR42_RS17555 +0.6 0.8 hypothetical protein compare
RR42_RS04965 +0.6 2.7 hypothetical protein compare
RR42_RS11225 +0.6 1.4 peptide ABC transporter permease compare
RR42_RS09010 +0.6 2.1 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
RR42_RS02675 +0.6 1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
RR42_RS29330 +0.6 2.6 hypothetical protein compare
RR42_RS02135 +0.6 2.4 membrane protein compare
RR42_RS34965 +0.5 1.9 dioxygenase compare
RR42_RS18730 +0.5 1.3 hypothetical protein compare
RR42_RS30450 +0.5 2.0 cation:proton antiporter compare
RR42_RS03685 +0.5 1.7 GTP cyclohydrolase compare
RR42_RS12375 +0.5 2.0 LysR family transcriptional regulator compare
RR42_RS16535 +0.5 1.3 hypothetical protein compare
RR42_RS02215 +0.5 2.1 fumarate reductase compare
RR42_RS34305 +0.5 2.3 glutamine ABC transporter ATP-binding protein compare
RR42_RS27445 +0.5 2.1 hypothetical protein compare
RR42_RS12270 +0.5 2.6 diguanylate phosphodiesterase compare
RR42_RS23360 +0.5 2.0 flagellar biosynthesis protein flip compare
RR42_RS15795 +0.5 1.7 spore coat protein compare
RR42_RS34710 +0.5 2.5 chemotaxis protein CheY compare
RR42_RS07885 +0.5 2.7 chemotaxis protein CheY compare
RR42_RS26925 +0.5 0.8 membrane protein compare
RR42_RS13185 +0.5 2.7 RNA polymerase sigma factor RpoS compare
RR42_RS25510 +0.5 0.8 short-chain dehydrogenase compare
RR42_RS00370 +0.5 2.3 Asp/Glu/hydantoin racemase compare
RR42_RS26885 +0.5 2.1 peptidase M20 compare
RR42_RS17130 +0.5 3.5 hypothetical protein compare
RR42_RS35740 +0.5 2.1 flagellar biosynthesis protein FlgN compare
RR42_RS12155 +0.5 1.1 molecular chaperone compare
RR42_RS34970 +0.5 2.6 bifunctional D-altronate/D-mannonate dehydratase compare
RR42_RS31945 +0.5 1.8 enoyl-CoA hydratase compare
RR42_RS11480 +0.5 1.6 cytochrome C compare
RR42_RS22245 +0.5 1.4 cytochrome C biogenesis protein compare
RR42_RS35970 +0.5 3.1 pilus assembly protein TadD compare
RR42_RS29110 +0.5 1.3 peroxiredoxin compare
RR42_RS00215 +0.5 1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS07185 +0.5 1.9 hypothetical protein compare
RR42_RS08005 +0.5 1.9 hypothetical protein compare
RR42_RS00240 +0.5 2.0 nucleotide pyrophosphohydrolase compare
RR42_RS06510 +0.5 1.9 hypothetical protein compare
RR42_RS15810 +0.5 1.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS05360 +0.5 1.2 membrane protein compare
RR42_RS06860 +0.5 0.9 hypothetical protein compare
RR42_RS10195 +0.5 0.7 hypothetical protein compare
RR42_RS03940 +0.5 1.0 membrane protein compare
RR42_RS22640 +0.5 1.9 CAAX amino protease compare
RR42_RS05780 +0.5 1.6 hypothetical protein compare
RR42_RS33860 +0.5 1.2 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS03670 +0.5 0.6 isochorismatase compare
RR42_RS22030 +0.5 1.1 hypothetical protein compare
RR42_RS02210 +0.5 0.7 succinate dehydrogenase compare
RR42_RS01970 +0.5 2.4 maleylacetoacetate isomerase compare
RR42_RS09100 +0.5 2.3 transcriptional regulator compare
RR42_RS05295 +0.5 2.2 hypothetical protein compare
RR42_RS25380 +0.5 2.0 acetyl-CoA acetyltransferase compare
RR42_RS13695 +0.5 2.1 3-phenylpropionate dioxygenase compare
RR42_RS20700 +0.5 2.0 GMC family oxidoreductase compare
RR42_RS13835 +0.5 1.5 hypothetical protein compare
RR42_RS27150 +0.5 2.0 hemolysin D compare
RR42_RS21695 +0.5 1.5 DNA-binding protein compare
RR42_RS08645 +0.5 2.4 phage capsid scaffolding protein compare
RR42_RS05255 +0.5 2.6 allantoinase compare
RR42_RS09825 +0.5 1.5 hypothetical protein compare
RR42_RS10585 +0.5 1.7 TetR family transcriptional regulator compare
RR42_RS33430 +0.5 1.6 LysR family transcriptional regulator compare
RR42_RS30570 +0.5 1.6 hypothetical protein compare
RR42_RS21055 +0.5 1.3 excisionase compare
RR42_RS29520 +0.5 2.3 acyl-CoA hydrolase compare
RR42_RS00245 +0.5 2.0 microcystin degradation protein MlrC compare
RR42_RS07015 +0.5 1.5 hypothetical protein compare
RR42_RS22085 +0.5 2.3 hypothetical protein compare
RR42_RS37410 +0.5 1.8 PaaX family transcriptional regulator compare
RR42_RS12020 +0.5 1.6 GCN5 family acetyltransferase compare
RR42_RS30765 +0.5 0.7 tRNA-Arg compare
RR42_RS04890 +0.5 1.5 ribonuclease PH compare
RR42_RS11985 +0.5 1.1 glutathione ABC transporter permease compare
RR42_RS00285 +0.5 0.9 thiamine biosynthesis protein ThiS compare
RR42_RS05720 +0.5 2.2 LysR family transcriptional regulator compare
RR42_RS22145 +0.5 1.9 amine dehydrogenase compare
RR42_RS28225 +0.5 1.8 diguanylate cyclase compare
RR42_RS07060 +0.5 1.8 hypothetical protein compare
RR42_RS19745 +0.5 1.1 RlpA-like protein compare
RR42_RS07125 +0.5 1.0 hypothetical protein compare
RR42_RS09565 +0.5 1.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Threonine in Cupriavidus basilensis FW507-4G11

For carbon source L-Threonine across organisms