Experiment set1IT044 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_03775 +1.8 2.5 protein of unknown function (DUF4399) compare
H281DRAFT_00722 +1.2 2.5 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_05334 +1.2 2.7 Short-chain dehydrogenase compare
H281DRAFT_04391 +1.1 8.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05764 +1.1 2.6 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_04390 +1.1 9.0 ATP-binding cassette, subfamily B compare
H281DRAFT_06483 +1.1 2.4 succinylglutamate desuccinylase compare
H281DRAFT_03863 +1.0 1.8 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_03496 +1.0 2.5 hypothetical protein compare
H281DRAFT_04369 +1.0 3.3 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_05537 +1.0 1.7 transcriptional regulator, IclR family compare
H281DRAFT_02695 +1.0 2.3 transcriptional regulator, HxlR family compare
H281DRAFT_01067 +1.0 1.8 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_02181 +1.0 2.4 carbon-monoxide dehydrogenase small subunit compare
H281DRAFT_03501 +1.0 2.3 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_01190 +0.9 1.6 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_01919 +0.9 2.2 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_06083 +0.9 2.0 heat shock protein Hsp20 compare
H281DRAFT_03820 +0.9 1.4 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_06419 +0.9 1.5 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_03314 +0.8 1.3 hypothetical protein compare
H281DRAFT_01590 +0.8 2.4 hypothetical protein compare
H281DRAFT_01633 +0.8 2.9 hypothetical protein compare
H281DRAFT_00677 +0.8 2.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05298 +0.8 1.2 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_00470 +0.8 5.1 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_01538 +0.8 3.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01827 +0.8 1.7 hypothetical protein compare
H281DRAFT_04415 +0.8 1.4 phosphate uptake regulator, PhoU compare
H281DRAFT_03023 +0.8 1.4 Protein of unknown function (DUF2866) compare
H281DRAFT_05768 +0.8 2.0 flagellar L-ring protein precursor FlgH compare
H281DRAFT_02704 +0.8 3.3 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_02549 +0.8 1.7 putative oxidoreductase compare
H281DRAFT_00873 +0.8 3.0 hypothetical protein compare
H281DRAFT_05762 +0.8 1.6 flagellar basal-body rod protein FlgB compare
H281DRAFT_01047 +0.8 1.7 GTP cyclohydrolase II compare
H281DRAFT_06521 +0.8 1.5 magnesium chelatase subunit ChlD-like protein compare
H281DRAFT_00717 +0.8 1.3 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_04773 +0.7 2.9 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_00376 +0.7 3.2 transcriptional regulator, TetR family compare
H281DRAFT_02195 +0.7 2.6 Protein of unknown function (DUF3185) compare
H281DRAFT_01049 +0.7 1.5 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_00849 +0.7 3.2 conserved hypothetical protein compare
H281DRAFT_01514 +0.7 1.1 ribose 1,5-bisphosphokinase compare
H281DRAFT_05763 +0.7 2.7 flagellar basal-body rod protein FlgC compare
H281DRAFT_05269 +0.7 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03411 +0.7 2.2 hypothetical protein compare
H281DRAFT_05785 +0.7 4.5 flagellar motor switch protein FliG compare
H281DRAFT_02658 +0.7 1.9 carbonic anhydrase compare
H281DRAFT_01192 +0.7 1.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01812 +0.7 2.7 Short-chain dehydrogenase compare
H281DRAFT_02683 +0.7 1.0 xanthine dehydrogenase accessory factor compare
H281DRAFT_00236 +0.7 2.7 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_02479 +0.7 2.5 transcriptional regulator, LysR family compare
H281DRAFT_03453 +0.7 3.1 transcriptional regulator, TetR family compare
H281DRAFT_05756 +0.7 2.0 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_06074 +0.7 2.6 entericidin A compare
H281DRAFT_05775 +0.7 2.5 flagellar biosynthetic protein FliQ compare
H281DRAFT_02910 +0.7 1.4 conserved hypothetical protein compare
H281DRAFT_02443 +0.7 1.1 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_00815 +0.7 3.3 hemoglobin compare
H281DRAFT_01756 +0.7 2.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_01411 +0.6 1.3 hypothetical protein compare
H281DRAFT_03497 +0.6 1.6 transcriptional regulator, DeoR family compare
H281DRAFT_04924 +0.6 2.2 iron complex outermembrane recepter protein compare
H281DRAFT_00298 +0.6 1.0 hypothetical protein compare
H281DRAFT_06322 +0.6 1.6 LPS-assembly lipoprotein compare
H281DRAFT_00946 +0.6 2.3 protein-tyrosine phosphatase compare
H281DRAFT_03451 +0.6 2.5 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_01632 +0.6 5.1 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_06355 +0.6 2.1 4-oxalomesaconate hydratase compare
H281DRAFT_01095 +0.6 0.8 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_00961 +0.6 1.6 hypothetical protein compare
H281DRAFT_02760 +0.6 2.3 TupA-like ATPgrasp compare
H281DRAFT_03151 +0.6 2.4 hypothetical protein compare
H281DRAFT_05944 +0.6 1.6 DNA-binding transcriptional regulator, FadR family compare
H281DRAFT_04777 +0.6 1.8 GDP-L-fucose synthase compare
H281DRAFT_03324 +0.6 1.7 Low affinity Fe/Cu permease compare
H281DRAFT_05779 +0.6 4.7 flagellar motor switch protein FliM compare
H281DRAFT_02444 +0.6 2.5 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_05962 +0.6 1.1 RraA famliy compare
H281DRAFT_02720 +0.6 1.8 GAF domain-containing protein compare
H281DRAFT_03834 +0.6 1.4 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_02499 +0.6 3.6 Acyl-CoA reductase compare
H281DRAFT_01749 +0.6 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01283 +0.6 3.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05867 +0.6 1.5 uncharacterized peroxidase-related enzyme compare
H281DRAFT_01792 +0.6 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00522 +0.6 2.2 GTP-binding protein HflX compare
H281DRAFT_00725 +0.6 1.4 hypothetical protein compare
H281DRAFT_03990 +0.6 2.1 addiction module antidote protein, HigA family compare
H281DRAFT_01988 +0.6 4.1 Cytochrome oxidase assembly protein ShyY1 compare
H281DRAFT_05002 +0.6 2.4 type III secretion protein (HrpB4) compare
H281DRAFT_06135 +0.6 1.4 hypothetical protein compare
H281DRAFT_05484 +0.6 2.5 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_06438 +0.6 1.3 hypothetical protein compare
H281DRAFT_01717 +0.6 1.4 L-alanine-DL-glutamate epimerase compare
H281DRAFT_00819 +0.6 0.8 competence protein ComEA compare
H281DRAFT_05899 +0.6 1.9 hypothetical protein compare
H281DRAFT_05770 +0.6 2.4 flagellar protein FlgJ compare
H281DRAFT_00255 +0.6 1.3 hypothetical protein compare
H281DRAFT_06430 +0.6 1.8 hypothetical protein compare
H281DRAFT_03154 +0.6 1.1 two-component system, NarL family, sensor kinase compare
H281DRAFT_03503 +0.6 1.8 transcriptional regulator, GntR family compare
H281DRAFT_06320 +0.6 1.6 biopolymer transport protein ExbD compare
H281DRAFT_05641 +0.6 2.0 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_05978 +0.6 2.2 Sugar lactone lactonase YvrE compare
H281DRAFT_05010 +0.6 1.6 type III secretion protein R compare
H281DRAFT_03475 +0.6 1.1 hypothetical protein compare
H281DRAFT_01139 +0.6 1.7 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit compare
H281DRAFT_01487 +0.6 2.1 hypothetical protein compare
H281DRAFT_01512 +0.6 2.1 transcriptional regulator, IclR family compare
H281DRAFT_00246 +0.6 2.7 phospholipid-binding protein, PBP family compare
H281DRAFT_00258 +0.6 2.3 glutathione S-transferase compare
H281DRAFT_03812 +0.6 2.2 hypothetical protein compare
H281DRAFT_01882 +0.6 2.7 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_01595 +0.6 1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_04792 +0.6 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01374 +0.6 2.2 transcriptional regulator, GntR family compare
H281DRAFT_03498 +0.5 2.5 hypothetical protein compare
H281DRAFT_02350 +0.5 2.4 general secretion pathway protein I compare
H281DRAFT_05753 +0.5 3.5 flagellar biosynthesis protein FlhA compare
H281DRAFT_02193 +0.5 1.2 hypothetical protein compare
H281DRAFT_02718 +0.5 1.4 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03912 +0.5 2.3 competence protein ComEA compare
H281DRAFT_00066 +0.5 1.2 hypothetical protein compare
H281DRAFT_03296 +0.5 1.1 hypothetical protein compare
H281DRAFT_03738 +0.5 1.9 hypothetical protein compare
H281DRAFT_06536 +0.5 2.8 rare lipoprotein A compare
H281DRAFT_06238 +0.5 1.0 hypothetical protein compare
H281DRAFT_00487 +0.5 1.3 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_01138 +0.5 1.0 2-furoate---CoA ligase compare
H281DRAFT_03825 +0.5 2.7 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_03573 +0.5 2.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01348 +0.5 3.1 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_06490 +0.5 0.9 hypothetical protein compare
H281DRAFT_03883 +0.5 1.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05912 +0.5 1.2 transcriptional regulator, TetR family compare
H281DRAFT_02734 +0.5 2.1 YXWGXW repeat-containing protein compare
H281DRAFT_04942 +0.5 2.4 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_04406 +0.5 1.1 putative RNA-binding protein, YhbY family compare
H281DRAFT_04739 +0.5 2.5 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_01767 +0.5 1.0 hypothetical protein compare
H281DRAFT_05752 +0.5 3.9 flagellar biosynthetic protein FlhB compare
H281DRAFT_03278 +0.5 0.9 Threonine dehydrogenase compare
H281DRAFT_02931 +0.5 2.0 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_04399 +0.5 2.2 hydroxyacylglutathione hydrolase compare
H281DRAFT_01167 +0.5 1.7 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_06281 +0.5 3.0 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_01441 +0.5 0.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_01229 +0.5 0.8 Sugar phosphate permease compare
H281DRAFT_01484 +0.5 2.4 transcriptional regulator, AraC family compare
H281DRAFT_01253 +0.5 0.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03839 +0.5 1.7 hypothetical protein compare
H281DRAFT_04790 +0.5 1.2 hypothetical protein compare
H281DRAFT_02684 +0.5 2.4 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_04996 +0.5 1.0 type III secretion protein C compare
H281DRAFT_01846 +0.5 1.8 hypothetical protein compare
H281DRAFT_01117 +0.5 1.4 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
H281DRAFT_05315 +0.5 0.8 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_00885 +0.5 2.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_06510 +0.5 1.6 methyl-accepting chemotaxis protein compare
H281DRAFT_06177 +0.5 2.1 hypothetical protein compare
H281DRAFT_05781 +0.5 2.3 flagellar hook-length control protein FliK compare
H281DRAFT_02579 +0.5 1.7 maleylacetate reductase compare
H281DRAFT_04755 +0.5 1.0 transcriptional regulator, LysR family compare
H281DRAFT_04887 +0.5 1.6 hypothetical protein compare
H281DRAFT_00227 +0.5 2.3 two component transcriptional regulator, winged helix family compare
H281DRAFT_02624 +0.5 1.2 4-carboxymuconolactone decarboxylase compare
H281DRAFT_01182 +0.5 1.7 SnoaL-like domain-containing protein compare
H281DRAFT_03335 +0.5 1.1 transcriptional regulator, LysR family compare
H281DRAFT_06387 +0.5 1.9 GntR family transcriptional regulator compare
H281DRAFT_04986 +0.5 1.7 protein ImuB compare
H281DRAFT_02668 +0.5 1.6 Xanthine/uracil permease compare
H281DRAFT_04966 +0.5 1.6 putative redox protein compare
H281DRAFT_03956 +0.5 1.9 Protein of unknown function (DUF2848) compare
H281DRAFT_02149 +0.5 3.1 Osmotically-inducible protein OsmY, contains BON domain compare
H281DRAFT_01290 +0.5 1.6 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
H281DRAFT_04632 +0.5 3.1 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_06466 +0.5 1.0 luciferase family oxidoreductase, group 1 compare
H281DRAFT_02723 +0.5 1.6 transcriptional regulator, GntR family compare
H281DRAFT_05398 +0.5 1.0 hypothetical protein compare
H281DRAFT_03120 +0.5 2.6 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03005 +0.5 1.2 hypothetical protein compare
H281DRAFT_02436 +0.5 3.1 flagellar hook-associated protein 2 compare
H281DRAFT_05761 +0.5 3.6 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_02472 +0.5 1.7 Fe-S oxidoreductase compare
H281DRAFT_04787 +0.5 1.2 polysaccharide transporter, PST family compare
H281DRAFT_03103 +0.5 2.2 hypothetical protein compare
H281DRAFT_04440 +0.5 1.9 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_04400 +0.5 3.7 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_01267 +0.5 1.7 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_04250 +0.5 2.2 DNA-binding protein Fis compare
H281DRAFT_01304 +0.5 1.7 formaldehyde activating enzyme compare
H281DRAFT_01225 +0.5 1.8 L-rhamnose mutarotase compare
H281DRAFT_05916 +0.5 2.2 hypothetical protein compare
H281DRAFT_01981 +0.5 2.2 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_04626 +0.5 1.6 acetyl-CoA acyltransferase compare
H281DRAFT_01644 +0.5 0.9 muconolactone delta-isomerase compare
H281DRAFT_00645 +0.5 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms