Experiment set1IT044 for Burkholderia phytofirmans PsJN

Compare to:

LB with Bacitracin 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -6.0 -4.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS13245 -6.0 -6.3 hypothetical protein compare
BPHYT_RS06175 -5.9 -7.0 LPS biosynthesis compare
BPHYT_RS34810 -5.1 -6.5 RND transporter compare
BPHYT_RS14855 -4.7 -4.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09515 -4.7 -6.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14060 -4.4 -3.0 peptidase M23 compare
BPHYT_RS04370 -4.2 -3.2 glycosyl transferase compare
BPHYT_RS06190 -4.1 -4.2 heptosyltransferase compare
BPHYT_RS02865 -4.1 -3.9 hypothetical protein compare
BPHYT_RS16840 -4.0 -3.9 transketolase compare
BPHYT_RS04965 -4.0 -10.8 ATP-binding protein compare
BPHYT_RS12615 -3.8 -2.5 dihydrodipicolinate synthase compare
BPHYT_RS01485 -3.8 -2.0 histidine kinase compare
BPHYT_RS03640 -3.7 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS04290 -3.6 -3.4 glycosyl transferase family 2 compare
BPHYT_RS34815 -3.6 -4.2 ABC transporter compare
BPHYT_RS03655 -3.6 -1.9 membrane protein compare
BPHYT_RS33580 -3.5 -7.8 geranyltranstransferase compare
BPHYT_RS03725 -3.4 -3.0 serine hydroxymethyltransferase compare
BPHYT_RS16255 -3.4 -7.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16245 -3.2 -7.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS34805 -3.1 -10.3 ABC transporter compare
BPHYT_RS33515 -3.0 -8.3 porin compare
BPHYT_RS17520 -2.9 -7.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04385 -2.8 -5.5 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS08565 -2.7 -2.5 dihydroorotate dehydrogenase compare
BPHYT_RS16270 -2.7 -7.5 phosphoglycerate kinase compare
BPHYT_RS08945 -2.7 -5.4 hypothetical protein compare
BPHYT_RS16710 -2.6 -2.3 LysR family transcriptional regulator compare
BPHYT_RS16675 -2.5 -3.4 dihydroorotase compare
BPHYT_RS18760 -2.4 -5.6 flagellar biosynthesis protein FliT compare
BPHYT_RS33920 -2.4 -10.1 type II citrate synthase compare
BPHYT_RS23840 -2.4 -3.4 methyltransferase compare
BPHYT_RS15415 -2.4 -14.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS15615 -2.4 -3.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS06610 -2.3 -3.3 triosephosphate isomerase compare
BPHYT_RS02590 -2.3 -9.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS04285 -2.3 -3.7 rhamnosyltransferase compare
BPHYT_RS17530 -2.3 -9.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS01625 -2.3 -5.2 chemotaxis protein CheY compare
BPHYT_RS17890 -2.3 -3.8 shikimate kinase compare
BPHYT_RS15620 -2.3 -5.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02860 -2.2 -1.8 membrane protein compare
BPHYT_RS08235 -2.1 -1.9 nucleoprotein, Hfg, host factor I compare
BPHYT_RS08850 -2.1 -2.6 transcriptional regulator compare
BPHYT_RS16835 -2.0 -8.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12990 -2.0 -4.0 iron transporter compare
BPHYT_RS17760 -2.0 -5.2 ABC transporter permease compare
BPHYT_RS03400 -2.0 -1.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS33840 -2.0 -6.7 amidophosphoribosyltransferase compare
BPHYT_RS12840 -1.8 -6.1 pyruvate dehydrogenase compare
BPHYT_RS11705 -1.8 -2.3 hypothetical protein compare
BPHYT_RS05705 -1.8 -1.9 hypothetical protein compare
BPHYT_RS06685 -1.8 -3.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06405 -1.8 -5.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS15015 -1.7 -2.3 ArsR family transcriptional regulator compare
BPHYT_RS17765 -1.7 -7.4 toluene ABC transporter ATP-binding protein compare
BPHYT_RS12845 -1.7 -12.4 ATPase compare
BPHYT_RS04950 -1.7 -13.0 hypothetical protein compare
BPHYT_RS04595 -1.7 -2.9 cytoplasmic protein compare
BPHYT_RS02540 -1.6 -2.3 hypothetical protein compare
BPHYT_RS18610 -1.6 -8.4 lytic transglycosylase compare
BPHYT_RS06410 -1.6 -3.9 transcriptional regulator compare
BPHYT_RS17745 -1.6 -8.4 toluene tolerance family protein compare
BPHYT_RS17095 -1.6 -3.1 proline--tRNA ligase compare
BPHYT_RS12465 -1.5 -4.1 inositol monophosphatase compare
BPHYT_RS04945 -1.5 -12.2 membrane protein compare
BPHYT_RS18925 -1.5 -7.8 RNA polymerase sigma70 compare
BPHYT_RS36275 -1.5 -2.5 hypothetical protein compare
BPHYT_RS24585 -1.5 -2.5 NUDIX hydrolase compare
BPHYT_RS16065 -1.4 -1.4 LacI family transcriptional regulator compare
BPHYT_RS14845 -1.4 -3.7 cysteine synthase compare
BPHYT_RS02285 -1.4 -6.9 cell division protein compare
BPHYT_RS33150 -1.4 -1.4 beta-lactamase compare
BPHYT_RS09330 -1.4 -9.5 phytoene synthase compare
BPHYT_RS12725 -1.4 -10.5 regulator compare
BPHYT_RS06530 -1.3 -2.0 membrane protein compare
BPHYT_RS08960 -1.3 -1.6 threonine synthase compare
BPHYT_RS21350 -1.3 -3.1 ADP-glucose pyrophosphorylase compare
BPHYT_RS21340 -1.3 -2.4 2OG-Fe(II) oxygenase compare
BPHYT_RS12055 -1.3 -10.8 phosphoenolpyruvate synthase compare
BPHYT_RS15075 -1.3 -2.7 dihydrokaempferol 4-reductase compare
BPHYT_RS02610 -1.3 -5.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS23230 -1.3 -1.1 histidine kinase compare
BPHYT_RS17525 -1.3 -2.0 glutaredoxin compare
BPHYT_RS26955 -1.3 -1.2 succinylglutamate desuccinylase compare
BPHYT_RS21335 -1.3 -2.3 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS17100 -1.3 -7.2 RNA pyrophosphohydrolase compare
BPHYT_RS19325 -1.3 -3.1 glycine cleavage system H protein compare
BPHYT_RS12925 -1.2 -1.2 exodeoxyribonuclease III compare
BPHYT_RS09105 -1.2 -3.2 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS16345 -1.2 -5.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS09100 -1.2 -4.2 stationary phase survival protein SurE compare
BPHYT_RS14670 -1.2 -1.5 hypothetical protein compare
BPHYT_RS27295 -1.2 -1.1 hypothetical protein compare
BPHYT_RS10095 -1.1 -3.0 integrase compare
BPHYT_RS17755 -1.1 -3.7 ABC transporter substrate-binding protein compare
BPHYT_RS16175 -1.1 -2.3 hemolysin D compare
BPHYT_RS06075 -1.1 -5.2 hypothetical protein compare
BPHYT_RS16340 -1.1 -5.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13220 -1.1 -4.2 phosphomethylpyrimidine synthase compare
BPHYT_RS09315 -1.1 -1.0 chemotaxis protein CheY compare
BPHYT_RS04940 -1.1 -2.6 hypothetical protein compare
BPHYT_RS26965 -1.0 -1.4 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS14140 -1.0 -2.2 phosphate transporter permease subunit PstC compare
BPHYT_RS18835 -1.0 -1.3 flagellar biosynthesis protein FliR compare
BPHYT_RS17035 -1.0 -2.1 sugar kinase compare
BPHYT_RS07515 -1.0 -2.5 photosystem reaction center subunit H compare
BPHYT_RS01630 -1.0 -2.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS03015 -1.0 -1.0 aldolase compare
BPHYT_RS10740 -1.0 -1.5 LuxR family transcriptional regulator compare
BPHYT_RS06195 -1.0 -1.4 membrane protein compare
BPHYT_RS25955 -1.0 -2.2 transcriptional regulator compare
BPHYT_RS30365 -0.9 -1.0 beta-lactamase compare
BPHYT_RS12785 -0.9 -3.4 Rrf2 family transcriptional regulator compare
BPHYT_RS18320 -0.9 -6.5 orotate phosphoribosyltransferase compare
BPHYT_RS29740 -0.9 -3.7 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS23650 -0.9 -0.8 hypothetical protein compare
BPHYT_RS16180 -0.9 -1.2 TetR family transcriptional regulator compare
BPHYT_RS35275 -0.9 -1.8 acetyltransferase compare
BPHYT_RS28485 -0.9 -1.2 GntR family transcriptional regulator compare
BPHYT_RS14190 -0.9 -5.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS34675 -0.9 -4.0 DNA-binding protein compare
BPHYT_RS04955 -0.9 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS25210 -0.9 -1.0 drug:proton antiporter compare
BPHYT_RS29745 -0.9 -1.8 phosphonopyruvate decarboxylase compare
BPHYT_RS23270 -0.9 -1.2 enoyl-CoA hydratase compare
BPHYT_RS33630 -0.9 -1.7 chromate transporter compare
BPHYT_RS08125 -0.9 -6.5 ATPase compare
BPHYT_RS12900 -0.9 -1.6 transposase compare
BPHYT_RS18900 -0.9 -6.4 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS29750 -0.9 -3.4 phosphoenolpyruvate phosphomutase compare
BPHYT_RS17920 -0.9 -1.4 protein CyaY compare
BPHYT_RS25270 -0.9 -1.6 multidrug MFS transporter compare
BPHYT_RS18765 -0.9 -4.4 flagellar biosynthesis protein FliS compare
BPHYT_RS01620 -0.9 -5.4 sensor histidine kinase compare
BPHYT_RS08525 -0.9 -1.2 SAM-dependent methyltransferase compare
BPHYT_RS31195 -0.9 -2.0 peptide ABC transporter permease compare
BPHYT_RS04010 -0.9 -1.2 glycosyl transferase compare
BPHYT_RS28830 -0.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS21860 -0.9 -1.3 hypothetical protein compare
BPHYT_RS35735 -0.9 -1.1 nitroreductase compare
BPHYT_RS11400 -0.9 -1.7 hypothetical protein compare
BPHYT_RS08955 -0.8 -3.7 homoserine dehydrogenase compare
BPHYT_RS18870 -0.8 -3.2 flagellar basal body rod protein FlgG compare
BPHYT_RS13080 -0.8 -0.9 hypothetical protein compare
BPHYT_RS09585 -0.8 -1.4 hypothetical protein compare
BPHYT_RS07130 -0.8 -1.3 biopolymer transporter ExbD compare
BPHYT_RS03280 -0.8 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS10645 -0.8 -1.1 cyanate hydratase compare
BPHYT_RS13645 -0.8 -6.5 threonine--tRNA ligase compare
BPHYT_RS26925 -0.8 -1.1 NIPSNAP family containing protein compare
BPHYT_RS16445 -0.8 -2.0 RNA helicase compare
BPHYT_RS16905 -0.8 -3.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS18785 -0.8 -1.4 flagellar assembly protein FliH compare
BPHYT_RS33845 -0.8 -2.4 bacteriocin production protein compare
BPHYT_RS30995 -0.8 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS09500 -0.8 -4.4 glucose-6-phosphate isomerase compare
BPHYT_RS18795 -0.8 -4.5 flagellar export protein FliJ compare
BPHYT_RS23740 -0.8 -4.8 AraC family transcriptional regulator compare
BPHYT_RS09650 -0.8 -1.8 hypothetical protein compare
BPHYT_RS23455 -0.8 -1.0 phosphorylase compare
BPHYT_RS32150 -0.8 -1.2 hypothetical protein compare
BPHYT_RS13935 -0.8 -1.7 mannosyltransferase compare
BPHYT_RS03090 -0.8 -0.9 hypothetical protein compare
BPHYT_RS14135 -0.8 -3.7 phosphate transporter permease subunit PtsA compare
BPHYT_RS14920 -0.8 -1.5 hypothetical protein compare
BPHYT_RS09860 -0.8 -0.9 pilus assembly protein PilP compare
BPHYT_RS23875 -0.8 -0.9 sugar ABC transporter ATP-binding protein compare
BPHYT_RS18895 -0.8 -1.4 flagellar basal body rod protein FlgB compare
BPHYT_RS08335 -0.8 -1.2 hypothetical protein compare
BPHYT_RS33030 -0.8 -1.0 hypothetical protein compare
BPHYT_RS06975 -0.8 -1.8 glutamate racemase compare
BPHYT_RS34445 -0.8 -2.8 GntR family transcriptional regulator compare
BPHYT_RS22145 -0.7 -1.4 phosphoesterase compare
BPHYT_RS18800 -0.7 -4.9 flagellar hook-length control protein compare
BPHYT_RS23570 -0.7 -3.2 chemotaxis protein CheY compare
BPHYT_RS27950 -0.7 -1.7 dihydroxyacetone kinase compare
BPHYT_RS26685 -0.7 -1.2 precorrin-8X methylmutase compare
BPHYT_RS32250 -0.7 -1.4 membrane protein compare
BPHYT_RS36360 -0.7 -1.8 hypothetical protein compare
BPHYT_RS18255 -0.7 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS19570 -0.7 -5.7 sodium/hydrogen exchanger compare
BPHYT_RS28705 -0.7 -1.1 IclR family transcriptional regulator compare
BPHYT_RS12510 -0.7 -1.5 RNA-binding protein compare
BPHYT_RS04335 -0.7 -1.1 membrane protein compare
BPHYT_RS33645 -0.7 -3.3 homoserine kinase compare
BPHYT_RS17945 -0.7 -1.5 cytochrome C biogenesis protein compare
BPHYT_RS18265 -0.7 -2.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS21940 -0.7 -2.3 hemolysin D compare
BPHYT_RS09905 -0.7 -1.3 hypothetical protein compare
BPHYT_RS14505 -0.7 -1.6 membrane protein compare
BPHYT_RS03175 -0.7 -3.9 sterol-binding protein compare
BPHYT_RS18865 -0.7 -2.9 flagellar L-ring protein FlgH compare
BPHYT_RS18260 -0.7 -3.4 phenylacetic acid degradation protein compare
BPHYT_RS16215 -0.7 -3.3 sensor histidine kinase compare
BPHYT_RS36220 -0.7 -0.9 hypothetical protein compare
BPHYT_RS01975 -0.7 -1.6 hypothetical protein compare
BPHYT_RS14945 -0.7 -2.4 phosphoglycolate phosphatase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Bacitracin across organisms