Experiment set1IT044 for Burkholderia phytofirmans PsJN

Compare to:

LB with Bacitracin 0.125 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS01795 +1.6 11.4 histidine kinase compare
BPHYT_RS01790 +1.5 14.5 LuxR family transcriptional regulator compare
BPHYT_RS19025 +1.2 7.0 transcriptional regulator compare
BPHYT_RS10540 +1.1 1.7 secretion protein compare
BPHYT_RS31020 +1.0 2.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS14250 +1.0 6.8 glycosyl transferase compare
BPHYT_RS33535 +1.0 9.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS10475 +1.0 2.0 mammalian cell entry protein compare
BPHYT_RS27655 +0.9 1.8 potassium transporter compare
BPHYT_RS14255 +0.9 7.6 ABC transporter compare
BPHYT_RS20545 +0.9 2.1 hypothetical protein compare
BPHYT_RS32280 +0.9 2.3 membrane protein compare
BPHYT_RS02760 +0.9 3.9 cytochrome BD oxidase subunit II compare
BPHYT_RS30825 +0.9 1.7 extradiol dioxygenase compare
BPHYT_RS08150 +0.9 1.3 membrane protein compare
BPHYT_RS33540 +0.9 2.7 hypothetical protein compare
BPHYT_RS12060 +0.8 1.9 hypothetical protein compare
BPHYT_RS23705 +0.8 6.2 hypothetical protein compare
BPHYT_RS27410 +0.8 1.6 amidohydrolase compare
BPHYT_RS10400 +0.8 1.4 taurine ABC transporter permease compare
BPHYT_RS25095 +0.8 2.4 AraC family transcriptional regulator compare
BPHYT_RS02765 +0.8 3.0 cytochrome BD oxidase subunit I compare
BPHYT_RS30880 +0.8 2.4 peptidase S13 compare
BPHYT_RS21215 +0.8 4.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS14185 +0.8 2.6 transcription elongation factor GreA compare
BPHYT_RS11215 +0.7 3.6 ribose ABC transporter ATPase compare
BPHYT_RS35585 +0.7 1.6 hypothetical protein compare
BPHYT_RS35310 +0.7 1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS10465 +0.7 2.3 hypothetical protein compare
BPHYT_RS22030 +0.7 2.1 peptide ABC transporter ATP-binding protein compare
BPHYT_RS29920 +0.7 1.0 hypothetical protein compare
BPHYT_RS10395 +0.7 2.1 sulfonate ABC transporter compare
BPHYT_RS08135 +0.7 1.5 hypothetical protein compare
BPHYT_RS30485 +0.7 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS10470 +0.7 1.6 hypothetical protein compare
BPHYT_RS35480 +0.7 1.9 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS26510 +0.7 1.4 transcriptional regulator compare
BPHYT_RS30795 +0.7 1.0 short-chain dehydrogenase compare
BPHYT_RS08615 +0.7 1.2 hypothetical protein compare
BPHYT_RS02480 +0.7 0.9 alkaline phosphatase compare
BPHYT_RS34745 +0.7 1.2 hypothetical protein compare
BPHYT_RS25450 +0.7 1.2 membrane protein compare
BPHYT_RS12325 +0.7 1.9 GNAT family acetyltransferase compare
BPHYT_RS03610 +0.7 3.2 deoxyadenosine kinase compare
BPHYT_RS25980 +0.7 1.1 urea carboxylase compare
BPHYT_RS12535 +0.6 1.0 membrane protein compare
BPHYT_RS27455 +0.6 1.4 rod shape-determining protein MreB compare
BPHYT_RS30375 +0.6 3.1 hypothetical protein compare
BPHYT_RS33805 +0.6 1.0 hypothetical protein compare
BPHYT_RS02985 +0.6 1.2 MaoC family dehydratase compare
BPHYT_RS12690 +0.6 2.5 hypothetical protein compare
BPHYT_RS34665 +0.6 1.9 hypothetical protein compare
BPHYT_RS32240 +0.6 1.3 chromosome replication initiation inhibitor protein compare
BPHYT_RS22870 +0.6 1.5 copper transporter compare
BPHYT_RS09310 +0.6 2.8 sensor histidine kinase compare
BPHYT_RS31030 +0.6 2.7 tyrosine protein kinase compare
BPHYT_RS20630 +0.6 1.2 patatin compare
BPHYT_RS12160 +0.6 2.4 peptide deformylase compare
BPHYT_RS19020 +0.6 4.5 transcriptional regulator compare
BPHYT_RS30745 +0.6 1.4 hypothetical protein compare
BPHYT_RS21505 +0.6 1.1 amidohydrolase compare
BPHYT_RS13320 +0.6 0.9 allantoate amidohydrolase compare
BPHYT_RS30210 +0.6 1.8 GCN5 family acetyltransferase compare
BPHYT_RS01170 +0.6 1.7 hypothetical protein compare
BPHYT_RS22940 +0.6 1.1 pilus assembly protein TadE compare
BPHYT_RS25005 +0.6 1.1 FMN reductase compare
BPHYT_RS06710 +0.6 1.1 hypothetical protein compare
BPHYT_RS33870 +0.6 2.8 DNA methylase N-4 compare
BPHYT_RS27175 +0.6 0.8 DNA-binding protein compare
BPHYT_RS02755 +0.6 1.5 cyd operon protein YbgT compare
BPHYT_RS03875 +0.6 1.8 dehydrogenase compare
BPHYT_RS28640 +0.6 2.7 ATPase compare
BPHYT_RS04560 +0.6 1.6 Hcp1 family type VI secretion system effector compare
BPHYT_RS28350 +0.6 1.1 fatty acid desaturase compare
BPHYT_RS11220 +0.6 2.5 LacI family transcriptional regulator compare
BPHYT_RS22330 +0.6 2.5 PhoB family transcriptional regulator compare
BPHYT_RS20185 +0.6 1.2 sugar transferase compare
BPHYT_RS12550 +0.6 0.9 GTP-binding protein HflX compare
BPHYT_RS15715 +0.5 3.4 ATP-dependent Clp protease adapter protein ClpS compare
BPHYT_RS31465 +0.5 0.9 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS07920 +0.5 1.5 hypothetical protein compare
BPHYT_RS14735 +0.5 0.9 hypothetical protein compare
BPHYT_RS31400 +0.5 0.8 methyl-accepting chemotaxis protein compare
BPHYT_RS07840 +0.5 1.6 muconate cycloisomerase compare
BPHYT_RS18590 +0.5 0.8 hypothetical protein compare
BPHYT_RS15290 +0.5 1.3 tRNA-Arg compare
BPHYT_RS34220 +0.5 2.4 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS13760 +0.5 2.0 hypothetical protein compare
BPHYT_RS22135 +0.5 1.5 3-ketoacyl-ACP reductase compare
BPHYT_RS33370 +0.5 1.2 LysR family transcriptional regulator compare
BPHYT_RS21585 +0.5 1.8 short-chain dehydrogenase compare
BPHYT_RS23250 +0.5 0.9 hypothetical protein compare
BPHYT_RS22820 +0.5 0.8 hydrolase compare
BPHYT_RS14205 +0.5 3.4 lytic transglycosylase compare
BPHYT_RS15275 +0.5 2.6 hypothetical protein compare
BPHYT_RS22180 +0.5 1.4 hypothetical protein compare
BPHYT_RS02770 +0.5 2.1 membrane protein compare
BPHYT_RS25720 +0.5 2.0 hypothetical protein compare
BPHYT_RS09895 +0.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS01240 +0.5 1.0 hypothetical protein compare
BPHYT_RS14790 +0.5 2.6 D-amino acid dehydrogenase compare
BPHYT_RS08600 +0.5 1.1 hypothetical protein compare
BPHYT_RS08385 +0.5 1.1 secretion protein compare
BPHYT_RS18965 +0.5 0.7 chemotaxis protein CheY compare
BPHYT_RS11020 +0.5 1.2 transporter compare
BPHYT_RS01035 +0.5 2.4 cyanate hydratase compare
BPHYT_RS34530 +0.5 1.6 LysR family transcriptional regulator compare
BPHYT_RS31385 +0.5 1.2 ketoacyl reductase compare
BPHYT_RS05845 +0.5 1.5 hypothetical protein compare
BPHYT_RS22815 +0.5 1.4 TonB-denpendent receptor compare
BPHYT_RS33110 +0.5 1.8 chloroperoxidase compare
BPHYT_RS06455 +0.5 2.3 potassium-transporting ATPase C chain compare
BPHYT_RS30085 +0.5 0.7 hypothetical protein compare
BPHYT_RS21870 +0.5 1.9 hypothetical protein compare
BPHYT_RS28620 +0.5 1.1 enoyl-CoA hydratase compare
BPHYT_RS10040 +0.5 0.6 hypothetical protein compare
BPHYT_RS10435 +0.5 1.3 ThiJ/PfpI domain-containing protein compare
BPHYT_RS21765 +0.5 1.2 IclR family transcriptional regulator compare
BPHYT_RS29605 +0.5 1.4 hypothetical protein compare
BPHYT_RS14595 +0.5 1.2 RNA-binding protein compare
BPHYT_RS12670 +0.5 1.2 cell division protein FtsB compare
BPHYT_RS33360 +0.5 1.4 formyl-CoA transferase compare
BPHYT_RS07795 +0.5 1.6 IclR family transcriptional regulator compare
BPHYT_RS09365 +0.5 1.5 cytochrome C2 compare
BPHYT_RS30650 +0.5 1.6 hypothetical protein compare
BPHYT_RS28255 +0.5 1.0 hypothetical protein compare
BPHYT_RS10750 +0.5 0.8 LysR family transcriptional regulator compare
BPHYT_RS33680 +0.5 3.0 phosphoesterase compare
BPHYT_RS16060 +0.5 1.5 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS17810 +0.5 1.4 transcriptional regulator compare
BPHYT_RS13515 +0.5 2.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06080 +0.5 1.2 endonuclease IV compare
BPHYT_RS27520 +0.5 1.9 membrane protein compare
BPHYT_RS27200 +0.5 2.3 pyridoxal 4-dehydrogenase compare
BPHYT_RS25780 +0.5 0.7 DeoR faimly transcriptional regulator compare
BPHYT_RS20845 +0.5 0.6 peroxidase compare
BPHYT_RS01985 +0.5 1.2 hypothetical protein compare
BPHYT_RS24350 +0.5 0.9 hypothetical protein compare
BPHYT_RS06260 +0.5 1.9 MFS transporter compare
BPHYT_RS29630 +0.5 1.4 SAM-dependent methyltransferase compare
BPHYT_RS35575 +0.5 1.2 transcriptional regulator compare
BPHYT_RS08715 +0.5 1.8 adenylyl-sulfate kinase compare
BPHYT_RS23615 +0.5 1.8 XRE family transcriptional regulator compare
BPHYT_RS30610 +0.5 1.2 major facilitator transporter compare
BPHYT_RS21625 +0.5 0.7 LysR family transcriptional regulator compare
BPHYT_RS35980 +0.4 2.5 hypothetical protein compare
BPHYT_RS32525 +0.4 1.0 hypothetical protein compare
BPHYT_RS34910 +0.4 2.2 acid phosphatase compare
BPHYT_RS33170 +0.4 1.7 acetyltransferase compare
BPHYT_RS12500 +0.4 1.0 hypothetical protein compare
BPHYT_RS26005 +0.4 1.3 MarR family transcriptional regulator compare
BPHYT_RS25815 +0.4 1.0 deoxyribose-phosphate aldolase compare
BPHYT_RS27860 +0.4 1.3 membrane protein compare
BPHYT_RS19030 +0.4 2.3 glycosyl transferase compare
BPHYT_RS28770 +0.4 1.5 aldehyde dehydrogenase compare
BPHYT_RS24665 +0.4 1.1 ABC transporter permease compare
BPHYT_RS19015 +0.4 3.0 flagellar motor protein MotA compare
BPHYT_RS00370 +0.4 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS30720 +0.4 1.2 hypothetical protein compare
BPHYT_RS02435 +0.4 0.7 hypothetical protein compare
BPHYT_RS07425 +0.4 1.5 hypothetical protein compare
BPHYT_RS34155 +0.4 1.0 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS09565 +0.4 1.0 acetyl-CoA acetyltransferase compare
BPHYT_RS00225 +0.4 1.4 hypothetical protein compare
BPHYT_RS30870 +0.4 1.5 chromate transporter compare
BPHYT_RS13470 +0.4 0.6 arylsulfate sulfotransferase compare
BPHYT_RS22635 +0.4 2.1 dihydrodipicolinate synthase compare
BPHYT_RS20430 +0.4 1.7 3-dehydroquinate dehydratase compare
BPHYT_RS31015 +0.4 1.2 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS24390 +0.4 1.3 hypothetical protein compare
BPHYT_RS28370 +0.4 0.7 peroxidase compare
BPHYT_RS26415 +0.4 0.6 glutathione S-transferase compare
BPHYT_RS26890 +0.4 1.4 LysR family transcriptional regulator compare
BPHYT_RS14260 +0.4 3.3 trehalose-6-phosphate synthase compare
BPHYT_RS11765 +0.4 0.6 polyamine ABC transporter permease compare
BPHYT_RS28540 +0.4 1.8 amino acid ABC substrate-binding protein compare
BPHYT_RS26775 +0.4 1.0 chemotaxis protein CheB compare
BPHYT_RS16085 +0.4 1.7 DeoR faimly transcriptional regulator compare
BPHYT_RS32415 +0.4 2.0 translation elongation factor compare
BPHYT_RS30140 +0.4 0.9 3-methylitaconate isomerase compare
BPHYT_RS10140 +0.4 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS23525 +0.4 0.8 hypothetical protein compare
BPHYT_RS26285 +0.4 1.4 glycogen debranching protein compare
BPHYT_RS06790 +0.4 2.8 hypothetical protein compare
BPHYT_RS28675 +0.4 1.8 hypothetical protein compare
BPHYT_RS36240 +0.4 0.9 hypothetical protein compare
BPHYT_RS32880 +0.4 0.7 alanine acetyltransferase compare
BPHYT_RS05245 +0.4 1.7 hypothetical protein compare
BPHYT_RS09205 +0.4 1.2 cytochrome P450 compare
BPHYT_RS11275 +0.4 1.4 hypothetical protein compare
BPHYT_RS04905 +0.4 1.4 quinol oxidase compare
BPHYT_RS28840 +0.4 0.9 oxidoreductase compare
BPHYT_RS35615 +0.4 1.5 hypothetical protein compare
BPHYT_RS19995 +0.4 2.0 response regulator receiver compare
BPHYT_RS26435 +0.4 0.9 hypothetical protein compare
BPHYT_RS32960 +0.4 1.2 short-chain dehydrogenase compare
BPHYT_RS28930 +0.4 0.5 chromosome partitioning protein ParA compare
BPHYT_RS34190 +0.4 2.2 chemotaxis protein compare
BPHYT_RS34305 +0.4 1.8 succinate-semialdehyde dehydrogenase compare
BPHYT_RS14200 +0.4 2.1 membrane protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Bacitracin across organisms