Experiment set1IT043 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.6 -5.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5001 -4.1 -4.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5430 -3.1 -14.0 Transglycosylase, Slt family compare
Pf6N2E2_2574 -3.0 -4.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_4352 -3.0 -4.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5006 -3.0 -12.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5527 -2.9 -3.6 Cold shock protein CspC compare
Pf6N2E2_3460 -2.7 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3617 -2.6 -7.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1636 -2.5 -10.9 Ferrichrome-iron receptor compare
Pf6N2E2_3611 -2.5 -2.8 HflC protein compare
Pf6N2E2_4162 -2.4 -3.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5316 -2.4 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3351 -2.3 -5.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4584 -2.1 -4.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2753 -2.1 -4.1 HtrA protease/chaperone protein compare
Pf6N2E2_3834 -2.1 -8.4 Lipoprotein NlpD compare
Pf6N2E2_5780 -1.9 -10.9 Periplasmic protease compare
Pf6N2E2_4585 -1.9 -12.2 Cell division protein FtsX compare
Pf6N2E2_2646 -1.9 -3.0 FIG00953416: hypothetical protein compare
Pf6N2E2_3060 -1.8 -2.6 Outer membrane protein H precursor compare
Pf6N2E2_5342 -1.7 -2.9 21 kDa hemolysin precursor compare
Pf6N2E2_2640 -1.6 -2.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1056 -1.6 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4416 -1.5 -2.1 Tyrosine recombinase XerC compare
Pf6N2E2_3833 -1.5 -5.1 hypothetical protein compare
Pf6N2E2_4611 -1.5 -3.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4353 -1.5 -5.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3285 -1.5 -4.4 Rod shape-determining protein MreD compare
Pf6N2E2_5536 -1.4 -1.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4803 -1.4 -1.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2752 -1.4 -8.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4206 -1.4 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4071 -1.3 -4.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3844 -1.3 -2.9 hypothetical protein compare
Pf6N2E2_5181 -1.3 -8.8 Paraquat-inducible protein A compare
Pf6N2E2_5508 -1.3 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2261 -1.2 -6.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_4638 -1.2 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4075 -1.2 -5.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5182 -1.2 -6.4 Paraquat-inducible protein A compare
Pf6N2E2_5428 -1.2 -5.2 DNA recombination and repair protein RecO compare
Pf6N2E2_2507 -1.2 -4.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3908 -1.1 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5841 -1.1 -1.5 GlcG protein compare
Pf6N2E2_4474 -1.1 -7.4 FIG006231: RNA-binding protein conserved
Pf6N2E2_3260 -1.1 -4.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1087 -1.1 -6.4 Iron siderophore sensor protein compare
Pf6N2E2_4153 -1.1 -1.5 Sensory box histidine kinase compare
Pf6N2E2_5936 -1.1 -2.4 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_4399 -1.1 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_2510 -1.1 -3.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5183 -1.1 -8.3 Paraquat-inducible protein B compare
Pf6N2E2_3786 -1.1 -3.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_2320 -1.1 -2.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5956 -1.1 -5.3 FIG004453: protein YceG like compare
Pf6N2E2_238 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_819 -1.1 -3.5 Response regulator compare
Pf6N2E2_4159 -1.0 -3.0 Cytochrome c4 compare
Pf6N2E2_2934 -1.0 -3.7 lipoprotein, putative compare
Pf6N2E2_331 -1.0 -3.2 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2317 -1.0 -3.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4052 -1.0 -1.8 FIG00955481: hypothetical protein compare
Pf6N2E2_2992 -1.0 -3.6 Regulatory protein RecX compare
Pf6N2E2_3461 -1.0 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4273 -1.0 -5.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_75 -1.0 -2.8 Colicin V production protein compare
Pf6N2E2_624 -1.0 -4.2 hypothetical protein PA3071 compare
Pf6N2E2_3258 -1.0 -3.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2325 -1.0 -4.7 Recombination protein RecR compare
Pf6N2E2_622 -1.0 -4.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4659 -1.0 -4.0 Lipoprotein, putative compare
Pf6N2E2_2755 -0.9 -1.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4197 -0.9 -6.1 DNA recombination and repair protein RecF compare
Pf6N2E2_2675 -0.9 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_144 -0.9 -7.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4886 -0.9 -7.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5219 -0.9 -6.4 FIG140336: TPR domain protein compare
Pf6N2E2_5337 -0.9 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1606 -0.9 -3.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4044 -0.9 -2.9 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_237 -0.9 -3.3 hypothetical protein compare
Pf6N2E2_2318 -0.9 -5.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4706 -0.9 -2.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4381 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_5843 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3243 -0.9 -6.8 FIG067310: hypothetical protein compare
Pf6N2E2_2509 -0.9 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1611 -0.8 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5861 -0.8 -5.5 FIG00953885: hypothetical protein compare
Pf6N2E2_4046 -0.8 -7.1 FIG00953482: hypothetical protein compare
Pf6N2E2_623 -0.8 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_2074 -0.8 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_1870 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2508 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_4454 -0.8 -3.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3941 -0.8 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1656 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_4369 -0.8 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5245 -0.8 -4.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3835 -0.8 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5633 -0.8 -6.4 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4298 -0.8 -2.1 Uncharacterized protein ImpB compare
Pf6N2E2_2021 -0.8 -5.3 Excinuclease ABC subunit C compare
Pf6N2E2_5771 -0.8 -4.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_4204 -0.8 -1.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_547 -0.8 -2.8 Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68) compare
Pf6N2E2_464 -0.8 -1.4 Sensory histidine kinase QseC compare
Pf6N2E2_4391 -0.8 -3.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1545 -0.8 -3.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2825 -0.8 -2.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5128 -0.8 -2.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_2674 -0.8 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_5339 -0.8 -4.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5816 -0.7 -1.4 Smr domain protein compare
Pf6N2E2_2586 -0.7 -1.4 Hpt domain protein compare
Pf6N2E2_3782 -0.7 -3.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3257 -0.7 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5554 -0.7 -3.6 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4372 -0.7 -3.2 FIG00460773: hypothetical protein compare
Pf6N2E2_4579 -0.7 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2518 -0.7 -1.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1040 -0.7 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_869 -0.7 -2.2 FMN oxidoreductase compare
Pf6N2E2_3370 -0.7 -4.9 DNA repair protein RecN compare
Pf6N2E2_447 -0.7 -3.2 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_145 -0.7 -4.9 putative exported protein compare
Pf6N2E2_652 -0.7 -2.3 General secretion pathway protein E compare
Pf6N2E2_5453 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_5943 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_52 -0.7 -5.4 Excinuclease ABC subunit B compare
Pf6N2E2_1376 -0.7 -2.7 probable transmembrane protein compare
Pf6N2E2_5172 -0.7 -2.9 FOG: TPR repeat compare
Pf6N2E2_4974 -0.7 -4.5 DedA protein compare
Pf6N2E2_4636 -0.7 -4.2 periplasmic binding protein, putative compare
Pf6N2E2_927 -0.7 -2.7 (AJ250023) putative polyketide synthase compare
Pf6N2E2_2756 -0.7 -3.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5520 -0.7 -3.8 Sensory box histidine kinase compare
Pf6N2E2_1469 -0.7 -2.4 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_3661 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_4888 -0.7 -6.0 Excinuclease ABC subunit A compare
Pf6N2E2_621 -0.7 -3.8 TPR domain protein in aerotolerance operon compare
Pf6N2E2_384 -0.7 -1.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2375 -0.7 -2.4 Response regulator NasT compare
Pf6N2E2_5594 -0.7 -3.0 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2869 -0.6 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3663 -0.6 -2.2 Glycosyl transferase compare
Pf6N2E2_4479 -0.6 -1.6 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_407 -0.6 -2.6 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_2527 -0.6 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1812 -0.6 -2.6 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_3039 -0.6 -2.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3603 -0.6 -3.1 FIG003573: hypothetical protein compare
Pf6N2E2_5689 -0.6 -2.7 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_3040 -0.6 -2.0 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3168 -0.6 -3.7 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf6N2E2_2218 -0.6 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3569 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_4309 -0.6 -2.4 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_97 -0.6 -2.0 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3261 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_5794 -0.6 -1.1 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_971 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_5103 -0.6 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4205 -0.6 -2.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1091 -0.6 -1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_460 -0.6 -1.7 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_2514 -0.6 -2.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_896 -0.6 -1.5 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_4963 -0.6 -1.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1605 -0.6 -3.1 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_1894 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_2156 -0.6 -1.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_5406 -0.6 -1.1 FIG00958224: hypothetical protein compare
Pf6N2E2_5178 -0.6 -0.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1635 -0.6 -1.5 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2549 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_1315 -0.6 -1.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2310 -0.6 -4.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2473 -0.6 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2258 -0.6 -3.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5739 -0.6 -1.0 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1173 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_5830 -0.6 -2.7 FIG00960829: hypothetical protein compare
Pf6N2E2_3373 -0.6 -1.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4591 -0.6 -2.3 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_5749 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_1464 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_3338 -0.6 -1.4 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_1199 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_620 -0.6 -2.9 BatD compare
Pf6N2E2_59 -0.6 -1.8 16 kDa heat shock protein A compare
Pf6N2E2_1303 -0.6 -1.4 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_4045 -0.5 -2.5 FIG00953248: hypothetical protein compare
Pf6N2E2_4165 -0.5 -3.4 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_2480 -0.5 -1.2 FIG00957636: hypothetical protein compare
Pf6N2E2_432 -0.5 -2.8 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_1667 -0.5 -1.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4615 -0.5 -1.4 type IV pili signal transduction protein PilI compare
Pf6N2E2_1074 -0.5 -1.5 FIG00953356: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium nitrate across organisms