Experiment set1IT043 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
AO356_08880 -3.8 -6.2 glycosyl transferase compare
AO356_09835 -3.7 -6.1 iron transporter compare
AO356_03420 -3.1 -8.4 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_08870 -3.1 -8.8 polymerase compare
AO356_03400 -3.0 -6.6 aminotransferase DegT compare
AO356_03415 -2.9 -9.4 oxidoreductase compare
AO356_22795 -2.8 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_08905 -2.8 -2.7 glycosyl transferase compare
AO356_08890 -2.8 -9.3 glycosyltransferase compare
AO356_03405 -2.7 -4.4 serine acetyltransferase compare
AO356_24845 -2.7 -3.1 ATPase compare
AO356_11265 -2.6 -7.0 hypothetical protein compare
AO356_15200 -2.5 -8.4 hypothetical protein compare
AO356_15660 -2.4 -8.8 ferredoxin-NADP reductase conserved
AO356_21125 -2.3 -5.8 cyclic peptide transporter compare
AO356_08895 -2.2 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_02875 -2.2 -6.4 peroxiredoxin compare
AO356_00605 -2.2 -4.7 TetR family transcriptional regulator compare
AO356_03360 -2.0 -2.9 hypothetical protein compare
AO356_01750 -1.9 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_18805 -1.9 -1.8 magnesium transporter compare
AO356_02460 -1.8 -2.4 hypothetical protein compare
AO356_01745 -1.8 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_12520 -1.8 -2.4 orotate phosphoribosyltransferase compare
AO356_04870 -1.8 -9.1 TetR family transcriptional regulator compare
AO356_07910 -1.7 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_01115 -1.7 -1.9 hypothetical protein compare
AO356_15165 -1.6 -2.3 protein cII compare
AO356_04560 -1.6 -2.5 serine peptidase compare
AO356_03365 -1.6 -3.6 UDP-N-acetylglucosamine 2-epimerase compare
AO356_07005 -1.6 -2.5 ABC transporter ATP-binding protein compare
AO356_02325 -1.5 -2.6 3-ketoacyl-CoA thiolase compare
AO356_03600 -1.5 -8.2 putative efflux pump, required for thallium (I) resistance (from data) conserved
AO356_20520 -1.5 -2.3 oxidoreductase compare
AO356_14505 -1.5 -2.3 peptidase M23 compare
AO356_11025 -1.5 -4.5 transcriptional regulator PhoU compare
AO356_20880 -1.4 -2.7 3-methylitaconate isomerase compare
AO356_11055 -1.4 -3.3 long-chain acyl-CoA thioester hydrolase compare
AO356_28825 -1.4 -3.1 histidine kinase compare
AO356_01630 -1.4 -5.1 anti-sigma factor compare
AO356_30025 -1.3 -3.0 ferredoxin compare
AO356_02800 -1.3 -2.4 transporter compare
AO356_09815 -1.3 -4.7 imidazoleglycerol-phosphate dehydratase compare
AO356_07915 -1.2 -2.4 exodeoxyribonuclease V subunit beta compare
AO356_18595 -1.2 -4.1 TetR family transcriptional regulator compare
AO356_03375 -1.2 -1.3 ExsB family protein compare
AO356_11610 -1.2 -1.5 glycerol acyltransferase compare
AO356_30375 -1.2 -2.4 hypothetical protein compare
AO356_03385 -1.1 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
AO356_27360 -1.1 -3.1 nitrile hydratase subunit alpha compare
AO356_25225 -1.1 -1.5 peptidylprolyl isomerase compare
AO356_03380 -1.1 -2.9 glycosyl amidation-associated protein WbuZ compare
AO356_14130 -1.1 -2.5 amidophosphoribosyltransferase compare
AO356_21095 -1.1 -1.5 thioesterase compare
AO356_06105 -1.1 -1.8 cold-shock protein compare
AO356_25750 -1.1 -2.5 GntR family transcriptional regulator compare
AO356_08875 -1.1 -2.3 toluene tolerance protein compare
AO356_17890 -1.1 -1.7 H-NS histone compare
AO356_12515 -1.1 -2.4 exodeoxyribonuclease III compare
AO356_19420 -1.0 -1.4 septum formation inhibitor compare
AO356_08610 -1.0 -4.4 exoribonuclease R compare
AO356_06385 -1.0 -2.6 recombinase XerD compare
AO356_25665 -1.0 -1.5 3-beta hydroxysteroid dehydrogenase compare
AO356_15690 -1.0 -1.8 carbon starvation protein A compare
AO356_09300 -1.0 -1.2 type II secretory protein PulM compare
AO356_04570 -0.9 -4.4 RNA polymerase subunit sigma compare
AO356_21765 -0.9 -1.6 GntR family transcriptional regulator compare
AO356_25655 -0.9 -3.2 TetR family transcriptional regulator compare
AO356_06605 -0.9 -2.9 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_28200 -0.9 -5.2 macrolide transporter compare
AO356_01740 -0.9 -2.2 DNA-binding protein compare
AO356_19035 -0.9 -4.3 hypothetical protein compare
AO356_09185 -0.9 -1.4 hypothetical protein compare
AO356_04100 -0.9 -3.0 ketosteroid isomerase compare
AO356_30050 -0.9 -2.3 aminomethyltransferase compare
AO356_13345 -0.9 -2.3 cell division ATP-binding protein FtsE compare
AO356_03810 -0.9 -3.1 anti-anti-sigma factor compare
AO356_18720 -0.9 -4.5 AraC family transcriptional regulator compare
AO356_07540 -0.9 -1.4 SsrA-binding protein compare
AO356_30040 -0.9 -3.0 formyltetrahydrofolate deformylase compare
AO356_14335 -0.9 -2.5 rRNA methyltransferase compare
AO356_17090 -0.8 -3.0 phospholipid-binding protein compare
AO356_09460 -0.8 -2.3 ATP-dependent protease ATP-binding subunit HslU compare
AO356_29125 -0.8 -1.3 vanillate monooxygenase compare
AO356_26630 -0.8 -2.1 XshC-Cox1 family protein compare
AO356_19835 -0.8 -1.6 histidine kinase compare
AO356_01875 -0.8 -1.0 Cro/Cl family transcriptional regulator compare
AO356_13965 -0.8 -2.5 hypothetical protein compare
AO356_10485 -0.8 -1.9 hypothetical protein compare
AO356_11270 -0.8 -3.3 potassium transporter peripheral membrane component compare
AO356_27630 -0.8 -2.1 chemotaxis protein CheY compare
AO356_30015 -0.8 -1.3 histidine kinase compare
AO356_00665 -0.8 -1.8 IclR family transcriptional regulator compare
AO356_19255 -0.8 -2.0 molecular chaperone compare
AO356_10350 -0.8 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
AO356_29540 -0.8 -1.8 transcriptional regulator compare
AO356_16070 -0.8 -3.1 poly(A) polymerase compare
AO356_15160 -0.8 -1.6 hypothetical protein compare
AO356_19810 -0.8 -1.7 esterase compare
AO356_04660 -0.8 -3.2 urea carboxylase compare
AO356_02370 -0.7 -5.0 MATE family efflux transporter compare
AO356_13800 -0.7 -3.6 transcriptional repressor BetI compare
AO356_07920 -0.7 -3.0 exodeoxyribonuclease V subunit gamma compare
AO356_24485 -0.7 -1.9 SAM-dependent methyltransferase compare
AO356_09555 -0.7 -2.4 hypothetical protein compare
AO356_07055 -0.7 -1.6 phosphocarrier protein HPr compare
AO356_16185 -0.7 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_00870 -0.7 -1.5 tRNA-Pro compare
AO356_18020 -0.7 -2.0 ATP-dependent DNA helicase RuvA compare
AO356_03270 -0.7 -1.8 terminase compare
AO356_09425 -0.7 -4.0 malate dehydrogenase compare
AO356_02250 -0.7 -3.8 pyridine nucleotide-disulfide oxidoreductase compare
AO356_08465 -0.7 -1.5 protein hupE compare
AO356_25380 -0.7 -2.6 alpha/beta hydrolase compare
AO356_11030 -0.7 -4.6 phosphate ABC transporter ATP-binding protein compare
AO356_23595 -0.7 -1.1 short-chain dehydrogenase compare
AO356_23475 -0.7 -2.5 polyketide synthase compare
AO356_00560 -0.7 -1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_17520 -0.7 -1.1 phosphoribosylformylglycinamidine synthase compare
AO356_02190 -0.7 -3.4 hypothetical protein compare
AO356_07385 -0.7 -0.9 tRNA-Thr compare
AO356_27770 -0.7 -2.0 hypothetical protein compare
AO356_30035 -0.7 -1.6 aminomethyltransferase compare
AO356_29160 -0.7 -1.5 (2Fe-2S)-binding protein compare
AO356_08645 -0.7 -2.3 hypothetical protein compare
AO356_22005 -0.7 -2.1 CopG family transcriptional regulator compare
AO356_23755 -0.7 -2.1 AraC family transcriptional regulator compare
AO356_25800 -0.7 -2.3 prevent-host-death protein compare
AO356_05135 -0.7 -1.7 aldehyde dehydrogenase compare
AO356_02335 -0.7 -1.7 hypothetical protein compare
AO356_16435 -0.7 -1.0 hypothetical protein compare
AO356_03595 -0.7 -1.2 carbon storage regulator compare
AO356_25170 -0.7 -1.3 lipid carrier protein compare
AO356_12640 -0.7 -1.5 cytochrome C compare
AO356_28205 -0.6 -3.5 hemolysin secretion protein D compare
AO356_21260 -0.6 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_07000 -0.6 -1.8 ABC transporter permease compare
AO356_06580 -0.6 -1.5 GTP-binding protein compare
AO356_16690 -0.6 -2.3 peptidylprolyl isomerase compare
AO356_20940 -0.6 -1.6 hypothetical protein compare
AO356_11495 -0.6 -3.0 hypothetical protein compare
AO356_07495 -0.6 -1.5 molecular chaperone DnaJ compare
AO356_00970 -0.6 -2.8 LacI family transcriptional regulator compare
AO356_23585 -0.6 -1.6 hypothetical protein compare
AO356_13790 -0.6 -4.6 choline dehydrogenase compare
AO356_22850 -0.6 -4.2 chemotaxis protein compare
AO356_00525 -0.6 -1.7 cobalamin biosynthesis protein CobE compare
AO356_01955 -0.6 -2.0 hypothetical protein compare
AO356_10245 -0.6 -2.2 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA compare
AO356_26475 -0.6 -1.4 lactoylglutathione lyase compare
AO356_13425 -0.6 -1.4 hypothetical protein compare
AO356_06170 -0.6 -2.7 hypothetical protein compare
AO356_19565 -0.6 -1.3 hypothetical protein compare
AO356_07600 -0.6 -1.4 hypothetical protein compare
AO356_14075 -0.6 -1.2 amino acid ABC transporter substrate-binding protein compare
AO356_14540 -0.6 -1.1 biotin--protein ligase compare
AO356_24555 -0.6 -1.1 hypothetical protein compare
AO356_20930 -0.6 -2.2 MerR family transcriptional regulator compare
AO356_14915 -0.6 -1.7 methyltransferase compare
AO356_26820 -0.6 -1.8 hypothetical protein compare
AO356_15140 -0.6 -1.0 homoserine dehydrogenase compare
AO356_20475 -0.6 -1.1 hypothetical protein compare
AO356_28675 -0.6 -1.2 glycosyl hydrolase compare
AO356_04235 -0.6 -2.0 LysR family transcriptional regulator compare
AO356_07105 -0.6 -2.8 hypothetical protein compare
AO356_26350 -0.6 -1.2 acetyl-CoA acetyltransferase compare
AO356_00575 -0.6 -1.3 SCP-2 family sterol carrier protein compare
AO356_29645 -0.6 -2.5 glutamine ABC transporter ATP-binding protein compare
AO356_02315 -0.6 -1.7 DNA topoisomerase I compare
AO356_15980 -0.6 -1.8 hypothetical protein compare
AO356_26030 -0.6 -2.1 hydroxyacid dehydrogenase compare
AO356_18155 -0.6 -1.1 cold-shock protein compare
AO356_02735 -0.6 -1.5 type III secretion regulator InvE compare
AO356_13350 -0.6 -4.7 cell division protein FtsX compare
AO356_20175 -0.6 -0.7 3-oxoacyl-ACP synthase compare
AO356_20365 -0.6 -2.3 hypothetical protein compare
AO356_04020 -0.6 -1.9 AraC family transcriptional regulator compare
AO356_19030 -0.6 -3.5 hypothetical protein compare
AO356_10230 -0.6 -3.5 cysteine desulfhydrase compare
AO356_26830 -0.6 -1.8 transcriptional regulator compare
AO356_09810 -0.6 -2.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_12885 -0.6 -3.2 hypothetical protein compare
AO356_08640 -0.6 -1.7 membrane protease HflC compare
AO356_11040 -0.6 -4.9 phosphate ABC transporter permease compare
AO356_01625 -0.5 -1.4 RNA polymerase subunit sigma-24 compare
AO356_22825 -0.5 -1.4 transcriptional regulator compare
AO356_30030 -0.5 -2.3 hypothetical protein compare
AO356_11765 -0.5 -2.2 amidase compare
AO356_18025 -0.5 -1.2 ATP-dependent DNA helicase RuvB compare
AO356_30045 -0.5 -2.0 potassium transporter compare
AO356_22140 -0.5 -1.7 cold-shock protein compare
AO356_17370 -0.5 -4.4 ATP-dependent RNA helicase RhlB compare
AO356_17965 -0.5 -2.3 mechanosensitive ion channel protein MscS compare
AO356_23235 -0.5 -1.4 hypothetical protein compare
AO356_00270 -0.5 -1.3 hypothetical protein compare
AO356_25270 -0.5 -1.8 hypothetical protein compare
AO356_12525 -0.5 -3.2 acetylglutamate kinase compare
AO356_10170 -0.5 -1.0 chemotaxis protein CheY compare
AO356_25300 -0.5 -1.1 hypothetical protein compare
AO356_19310 -0.5 -2.5 Cro/Cl family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2C3

For stress Thallium(I) acetate across organisms