Experiment set1IT043 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO356_06650 +2.8 9.6 transcriptional regulator compare
AO356_27215 +2.5 7.7 hypothetical protein compare
AO356_27210 +2.3 14.5 hypothetical protein compare
AO356_27205 +2.3 13.3 hypothetical protein compare
AO356_09540 +2.0 2.9 twin-arginine protein translocation system subunit TatC compare
AO356_27170 +1.9 5.3 XRE family transcriptional regulator compare
AO356_00355 +1.8 11.6 chemotaxis protein CheY compare
AO356_19045 +1.7 15.2 chemotaxis protein CheY compare
AO356_20830 +1.5 5.3 phosphoadenosine phosphosulfate reductase compare
AO356_10380 +1.4 12.1 ATPase P compare
AO356_17070 +1.4 3.1 cytochrome B compare
AO356_22095 +1.4 7.2 cupin compare
AO356_20335 +1.4 5.0 hypothetical protein compare
AO356_09780 +1.4 6.9 peptidase S41 compare
AO356_27140 +1.3 4.0 homoserine dehydrogenase compare
AO356_05995 +1.3 4.4 hypothetical protein compare
AO356_10375 +1.2 6.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO356_27130 +1.2 4.3 cystathionine gamma-lyase compare
AO356_27230 +1.2 5.6 hypothetical protein compare
AO356_23290 +1.2 7.2 Cro/Cl family transcriptional regulator conserved
AO356_16485 +1.1 7.6 hypothetical protein compare
AO356_05100 +1.1 9.3 long-chain fatty acid--CoA ligase compare
AO356_17075 +1.0 2.1 cytochrome C compare
AO356_05630 +1.0 5.1 LysR family transcriptional regulator compare
AO356_27225 +1.0 3.3 polyketide cyclase compare
AO356_19050 +1.0 3.2 cysteine synthase compare
AO356_02860 +1.0 2.6 histidine kinase compare
AO356_28475 +1.0 3.1 hypothetical protein compare
AO356_06005 +1.0 3.6 zinc metallopeptidase RseP compare
AO356_27135 +1.0 3.8 aldehyde dehydrogenase compare
AO356_04885 +1.0 6.0 multidrug transporter compare
AO356_00420 +0.9 3.2 3-hydroxybutyrate dehydrogenase compare
AO356_06600 +0.9 5.8 pilus assembly protein PilW compare
AO356_04875 +0.9 6.5 antibiotic transporter compare
AO356_15920 +0.9 3.5 DNA transporter compare
AO356_03855 +0.9 7.7 AAA family ATPase compare
AO356_17485 +0.9 3.8 elongation factor 4 compare
AO356_04880 +0.9 7.5 multidrug transporter compare
AO356_16450 +0.9 3.5 GTP-binding protein compare
AO356_27250 +0.9 4.4 hypothetical protein compare
AO356_29770 +0.9 3.0 sarcosine oxidase subunit alpha compare
AO356_27180 +0.9 3.0 hypothetical protein compare
AO356_18755 +0.9 5.1 succinylglutamate desuccinylase compare
AO356_07750 +0.8 2.5 plasmid stabilization protein compare
AO356_05565 +0.8 3.5 hypothetical protein compare
AO356_01940 +0.8 1.3 hypothetical protein compare
AO356_16060 +0.8 3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_28160 +0.8 1.8 hypothetical protein compare
AO356_17400 +0.8 2.9 transcriptional regulator compare
AO356_06615 +0.8 1.4 FeS assembly protein IscX compare
AO356_19335 +0.8 6.4 peptidase S41 compare
AO356_18725 +0.8 3.9 acetylornithine aminotransferase compare
AO356_04740 +0.8 2.9 hypothetical protein compare
AO356_09455 +0.8 1.3 ATP-dependent protease subunit HslV compare
AO356_12140 +0.8 1.8 type VI secretion protein compare
AO356_09795 +0.8 1.1 imidazole glycerol phosphate synthase subunit HisF compare
AO356_28330 +0.7 2.6 secretion protein HlyD compare
AO356_08055 +0.7 2.3 copper resistance protein CopZ compare
AO356_19080 +0.7 5.5 dehydrogenase compare
AO356_06690 +0.7 2.1 queuine tRNA-ribosyltransferase compare
AO356_25120 +0.7 1.9 hypothetical protein compare
AO356_18000 +0.7 1.3 FmdB family transcriptional regulator compare
AO356_19520 +0.7 2.7 isochorismatase compare
AO356_04025 +0.7 1.7 hypothetical protein compare
AO356_18675 +0.7 2.8 hypothetical protein compare
AO356_03975 +0.7 4.4 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO356_23400 +0.7 1.1 phosphonate ABC transporter compare
AO356_14490 +0.7 3.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO356_18530 +0.7 5.8 L-tyrosine transporter (from data) compare
AO356_27290 +0.7 2.7 cytochrome B compare
AO356_05080 +0.7 1.2 peptide deformylase compare
AO356_11090 +0.7 2.6 aspartate ammonia-lyase compare
AO356_28445 +0.7 1.7 decarboxylase compare
AO356_25900 +0.7 3.5 hypothetical protein compare
AO356_16520 +0.7 2.0 Fe-S-oxidoreductase compare
AO356_23645 +0.7 1.4 hypothetical protein compare
AO356_18295 +0.7 3.8 bacterioferritin compare
AO356_18475 +0.7 2.1 chemotaxis protein CheY compare
AO356_21320 +0.7 1.1 tRNA-Asn compare
AO356_14105 +0.6 1.4 glycine cleavage system protein R compare
AO356_20090 +0.6 1.8 protein tyrosine phosphatase compare
AO356_27185 +0.6 1.9 hypothetical protein compare
AO356_15420 +0.6 2.6 hypothetical protein compare
AO356_04420 +0.6 2.3 ribonuclease D compare
AO356_25535 +0.6 1.6 hypothetical protein compare
AO356_24880 +0.6 2.3 ABC transporter substrate-binding protein compare
AO356_08585 +0.6 2.4 50S ribosomal protein L9 compare
AO356_16075 +0.6 2.4 Fis family transcriptional regulator compare
AO356_00130 +0.6 3.0 XRE family transcriptional regulator compare
AO356_07390 +0.6 0.8 polyribonucleotide nucleotidyltransferase compare
AO356_20340 +0.6 3.5 hypothetical protein compare
AO356_08325 +0.6 2.2 predicted copper homeostasis protein (from data) compare
AO356_18735 +0.6 2.3 arginine N-succinyltransferase compare
AO356_16095 +0.6 3.8 molecular chaperone DnaK compare
AO356_27235 +0.6 3.0 hypothetical protein compare
AO356_09165 +0.6 2.0 glycosyl transferase compare
AO356_23805 +0.6 2.1 hypothetical protein compare
AO356_20265 +0.6 2.0 hypothetical protein compare
AO356_22370 +0.6 2.6 hypothetical protein compare
AO356_04935 +0.6 1.4 3-oxoadipate--succinyl-CoA transferase compare
AO356_02580 +0.6 2.7 GntR family transcriptional regulator compare
AO356_25540 +0.6 2.8 FAD-dependent oxidoreductase compare
AO356_27240 +0.6 2.5 hypothetical protein compare
AO356_24125 +0.6 1.7 hypothetical protein compare
AO356_15925 +0.6 3.0 ribosomal large subunit pseudouridine synthase D compare
AO356_27220 +0.6 3.3 hypothetical protein compare
AO356_17985 +0.6 3.2 cold-shock protein compare
AO356_25720 +0.6 0.7 polyamine ABC transporter permease compare
AO356_13075 +0.6 3.5 adenylate cyclase compare
AO356_26730 +0.6 1.2 cupin compare
AO356_04550 +0.6 1.7 response regulator SirA compare
AO356_29315 +0.6 1.7 acyl-CoA dehydrogenase compare
AO356_19635 +0.6 3.9 TetR family transcriptional regulator compare
AO356_02310 +0.6 2.0 PasA protein compare
AO356_25920 +0.6 3.0 hypothetical protein compare
AO356_10225 +0.6 4.7 choline transporter compare
AO356_05000 +0.6 2.5 lysine transporter LysE compare
AO356_13455 +0.6 2.1 uracil phosphoribosyltransferase compare
AO356_05160 +0.6 3.3 glucose-6-phosphate dehydrogenase compare
AO356_28610 +0.6 1.2 AraC family transcriptional regulator compare
AO356_13590 +0.6 4.1 DEAD/DEAH box helicase compare
AO356_19515 +0.6 1.0 hypothetical protein compare
AO356_12895 +0.5 5.0 polyphosphate kinase compare
AO356_02485 +0.5 1.9 transcriptional regulator compare
AO356_28650 +0.5 2.4 2-keto-4-pentenoate hydratase compare
AO356_12500 +0.5 3.8 ribonuclease PH compare
AO356_03240 +0.5 2.3 transcription elongation factor GreB compare
AO356_12715 +0.5 1.9 hypothetical protein compare
AO356_12620 +0.5 4.0 amino acid dehydrogenase compare
AO356_22675 +0.5 1.1 sulfate transporter compare
AO356_09120 +0.5 1.9 amidase compare
AO356_17575 +0.5 1.4 hypothetical protein compare
AO356_04855 +0.5 2.3 arabinose transporter permease compare
AO356_05785 +0.5 1.7 phage tail protein compare
AO356_08375 +0.5 1.4 acetyltransferase compare
AO356_12780 +0.5 2.9 argininosuccinate lyase compare
AO356_21235 +0.5 2.6 carboxymuconolactone decarboxylase compare
AO356_02720 +0.5 1.1 type III secretion protein compare
AO356_14285 +0.5 2.2 glycerol-3-phosphate acyltransferase compare
AO356_18080 +0.5 4.1 LysR family transcriptional regulator compare
AO356_05640 +0.5 1.6 LuxR family transcriptional regulator compare
AO356_18745 +0.5 2.8 succinylarginine dihydrolase compare
AO356_03210 +0.5 1.3 hypothetical protein compare
AO356_12945 +0.5 2.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_02715 +0.5 2.2 type III secretion effector protein compare
AO356_27390 +0.5 1.7 ATPase compare
AO356_01185 +0.5 2.7 glycosyl transferase family 2 compare
AO356_22090 +0.5 2.0 GNAT family acetyltransferase compare
AO356_28020 +0.5 2.4 ethanol oxidation regulatory protein ercA (from data) compare
AO356_19145 +0.5 1.4 5,6-dimethylbenzimidazole synthase compare
AO356_12730 +0.5 1.8 hypothetical protein compare
AO356_21655 +0.5 1.2 LysR family transcriptional regulator compare
AO356_09055 +0.5 2.3 transcriptional regulator compare
AO356_27150 +0.5 1.7 threonine synthase compare
AO356_28660 +0.5 2.3 hydrolase compare
AO356_16965 +0.5 4.5 cytochrome o ubiquinol oxidase subunit I compare
AO356_02940 +0.5 0.9 hypothetical protein compare
AO356_18730 +0.5 3.1 arginine N-succinyltransferase compare
AO356_01640 +0.5 1.7 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein compare
AO356_15050 +0.5 2.1 phage shock protein A compare
AO356_03825 +0.5 1.9 flagellar assembly protein FliH compare
AO356_21805 +0.5 1.9 LexA family transcriptional regulator compare
AO356_03765 +0.5 2.3 flagellar biosynthetic protein FliQ compare
AO356_05830 +0.5 0.7 phage tail protein compare
AO356_26875 +0.5 1.6 alcohol dehydrogenase compare
AO356_10235 +0.5 3.6 cystine transporter subunit compare
AO356_13445 +0.5 0.8 dihydroorotase compare
AO356_22955 +0.5 1.2 ArsR family transcriptional regulator compare
AO356_12735 +0.5 1.1 diaminopimelate epimerase compare
AO356_25835 +0.5 1.7 hypothetical protein compare
AO356_08475 +0.5 3.0 hypothetical protein compare
AO356_21170 +0.5 2.0 hemolysin secretion protein D compare
AO356_06065 +0.5 1.5 ArsC family transcriptional regulator compare
AO356_26270 +0.5 1.5 histidine kinase compare
AO356_03770 +0.5 2.0 flagellar biosynthesis protein flip compare
AO356_27175 +0.5 2.2 hypothetical protein compare
AO356_29590 +0.5 1.4 ester cyclase compare
AO356_19015 +0.4 2.4 NAD(P)H-quinone oxidoreductase compare
AO356_01545 +0.4 0.8 hypothetical protein compare
AO356_00930 +0.4 2.0 hypothetical protein compare
AO356_23180 +0.4 1.6 xylose isomerase compare
AO356_12495 +0.4 2.2 hypothetical protein compare
AO356_00175 +0.4 1.6 conjugal transfer protein compare
AO356_27760 +0.4 1.0 LysR family transcriptional regulator compare
AO356_28290 +0.4 1.3 LuxR family transcriptional regulator compare
AO356_17035 +0.4 2.4 ATPase compare
AO356_03745 +0.4 3.8 flagellar biosynthesis protein FlhA compare
AO356_28300 +0.4 0.8 hypothetical protein compare
AO356_06760 +0.4 1.9 transcriptional antiterminator compare
AO356_02005 +0.4 1.2 hypothetical protein compare
AO356_28850 +0.4 2.1 chemotaxis protein compare
AO356_09880 +0.4 1.6 antitoxin compare
AO356_01590 +0.4 1.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_03500 +0.4 1.6 3-oxoacyl-ACP reductase compare
AO356_29690 +0.4 1.6 polysaccharide deacetylase compare
AO356_13585 +0.4 3.6 hypothetical protein compare
AO356_18195 +0.4 2.5 3-beta hydroxysteroid dehydrogenase compare
AO356_07160 +0.4 1.1 4-carboxymuconolactone decarboxylase compare
AO356_17650 +0.4 2.7 adhesin compare
AO356_17065 +0.4 0.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare


Specific Phenotypes

For 6 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2C3

For stress Thallium(I) acetate across organisms