Experiment set1IT043 for Sinorhizobium meliloti 1021

Compare to:

LB with Paraquat dichloride 0.2 mg/ml

200 most important genes:

  gene name fitness t score description  
SMc00619 -3.2 -2.2 hypothetical protein compare
SMc00053 -3.2 -1.3 monovalent cation/H+ antiporter subunit C compare
SMc02510 -2.7 -1.1 ferric uptake regulation protein compare
SMc00802 -2.6 -1.0 hypothetical protein compare
SMc02850 -2.6 -3.5 DNA polymerase I compare
SMc04296 -2.4 -1.3 cell division protein FtsZ compare
SMc01187 -2.4 -2.8 rare lipoprotein A compare
SMc00088 -2.4 -1.9 hypothetical protein compare
SMc01881 -2.3 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02142 -2.2 -4.3 phosphate transporter ATP-binding protein compare
SMc02495 -2.2 -1.7 translaldolase compare
SMc00876 -2.1 -4.8 ATP-binding MRP protein compare
SMc01364 -2.1 -1.2 DNA topoisomerase I compare
SMc01360 -2.0 -3.5 aspartate carbamoyltransferase catalytic subunit compare
SMc00492 -2.0 -1.1 hypothetical protein compare
SMc01880 -2.0 -2.4 pantoate--beta-alanine ligase compare
SMc02833 -2.0 -2.3 penicillin-insensitive murein endopeptidase compare
SMc02144 -2.0 -2.7 phosphate ABC transporter permease compare
SMa0905 -1.9 -1.5 hypothetical protein compare
SMc02719 -1.9 -1.1 transposase compare
SMc00914 -1.7 -3.2 oxidoreductase compare
SMc02149 -1.7 -1.7 hypothetical protein compare
SMc02683 -1.7 -1.6 hypothetical protein compare
SM_b21551 -1.7 -1.2 hypothetical protein compare
SMc00580 -1.7 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01119 -1.7 -1.6 hypothetical protein compare
SMc02989 -1.7 -2.2 hypothetical protein compare
SMc02121 -1.6 -1.6 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc01472 -1.6 -1.3 50S ribosomal protein L11 methyltransferase compare
SMc01147 -1.6 -2.2 coproporphyrinogen III oxidase compare
SMc00166 -1.6 -1.1 oxidoreductase NAD protein compare
SM_b20948 -1.6 -1.6 glucosyltransferase compare
SMc03763 -1.6 -2.2 cytosine-specific methyltransferase compare
SMa5010 -1.6 -1.2 hypothetical protein compare
SMc00815 -1.6 -1.1 inosine 5'-monophosphate dehydrogenase compare
SMc00970 -1.5 -2.7 exodeoxyribonuclease VII small subunit compare
SMa2034 -1.5 -1.7 hypothetical protein compare
SMc00760 -1.5 -3.7 recombinase A compare
SMc03993 -1.5 -5.2 hypothetical protein compare
SMc04121 -1.5 -1.9 uracil phosphoribosyltransferase compare
SMc01361 -1.4 -3.9 dihydroorotase compare
SMc03140 -1.4 -4.1 transcriptional regulator compare
SMc02147 -1.4 -5.1 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02753 -1.4 -1.3 PTS system transporter subunit IIA compare
SMc01342 -1.4 -3.3 hypothetical protein compare
SMc00859 -1.3 -2.0 hypothetical protein compare
SMc00987 -1.3 -2.0 hypothetical protein compare
SMc04024 -1.3 -4.3 membrane-bound lytic murein transglycosylase compare
SMa2053 -1.3 -1.7 MocE-like protein compare
SMc02232 -1.2 -2.5 hypothetical protein compare
SMc01208 -1.2 -1.7 peptidyl-prolyl cis-trans isomerase B protein compare
SMc00556 -1.2 -3.4 DNA repair protein RadA compare
SMc02385 -1.2 -1.8 hypothetical protein compare
SMc02266 -1.2 -1.5 hypothetical protein compare
SMc02140 -1.2 -1.4 phosphate regulon transcriptional regulatory protein compare
SM_b20955 -1.1 -2.7 endo-beta-1,3-1,4-glycanase compare
SMc01857 -1.1 -2.5 cell division protein MraZ compare
SMc01153 -1.1 -0.8 enoyl-CoA hydratase compare
SMa1576 -1.1 -3.6 CpaB2 pilus assembly protein compare
SMc02724 -1.1 -2.3 hypothetical protein compare
SMc01877 -1.1 -3.3 DNA repair protein compare
SMc00963 -1.1 -1.9 hypothetical protein compare
SM_b21523 -1.1 -2.0 cell division inhibitor protein compare
SMc02866 -1.1 -1.3 transcriptional regulator compare
SMc02484 -1.1 -2.4 amino acid efflux transmembrane protein compare
SMc04327 -1.0 -0.9 hypothetical protein compare
SMc03227 -1.0 -1.7 hypothetical protein compare
SMc01727 -1.0 -2.4 hypothetical protein compare
SM_b21213 -1.0 -3.2 serinethreonine protein phosphatase compare
SMc01578 -1.0 -5.6 aspartate aminotransferase compare
SMc03229 -1.0 -1.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03773 -1.0 -3.1 hypothetical protein compare
SMc01845 -1.0 -1.6 transglycosylase transmembrane protein compare
SMa0543 -1.0 -1.2 hypothetical protein compare
SMc02867 -1.0 -1.9 multidrug-efflux system transmembrane protein compare
SMc02909 -1.0 -1.0 transglycosylase transmembrane protein compare
SMc00352 -1.0 -1.1 acetyltransferase compare
SMc02247 -1.0 -0.9 signal peptide protein compare
SMa1924 -1.0 -0.7 hypothetical protein compare
SMc02141 -1.0 -2.6 phosphate transporter PhoU compare
SMc05020 -1.0 -1.3 entericidin A precursor compare
SMc01969 -1.0 -3.8 hypothetical protein compare
SMc01700 -0.9 -4.2 peptidyl-prolyl cis-trans isomerase A compare
SMc01351 -0.9 -2.2 hypothetical protein compare
SMc00334 -0.9 -1.0 cytidylate kinase compare
SMc01424 -0.9 -1.6 nitrile hydratase subunit alpha protein compare
SMc02084 -0.9 -0.8 biopolymer transport transmembrane protein compare
SMc02868 -0.9 -2.1 multidrug efflux system protein compare
SMc01581 -0.9 -2.4 hypothetical protein compare
SMc00579 -0.9 -2.5 dimethyladenosine transferase compare
SM_b20307 -0.9 -0.6 dihydroxyacetone kinase compare
SMc02373 -0.9 -0.8 hypothetical protein compare
SMc02143 -0.9 -2.0 phosphate ABC transporter permease compare
SMc03127 -0.9 -1.0 ABC transporter permease compare
SMc01347 -0.9 -2.3 hypothetical protein compare
SM_b20357 -0.9 -2.0 histidine kinase compare
SMc00419 -0.9 -1.8 glutathione synthetase compare
SMc01853 -0.9 -2.6 hypothetical protein compare
SMa0164 -0.9 -1.8 hypothetical protein compare
SMc00854 -0.9 -1.3 hypothetical protein compare
SMa0753 -0.9 -0.6 hypothetical protein compare
SM_b20687 -0.9 -3.0 hypothetical protein compare
SMc01619 -0.9 -1.5 hypothetical protein compare
SMc03836 -0.9 -1.0 acyl-CoA thioesterase i protein compare
SMc03250 -0.9 -1.7 hypothetical protein compare
SMc04330 -0.9 -1.1 trimethylamine methyltransferase compare
SMa0095 -0.9 -2.0 D-aminopeptidase compare
SMc02894 -0.8 -1.5 hypothetical protein compare
SMc02234 -0.8 -1.3 hypothetical protein compare
SMc02435 -0.8 -1.6 methyltransferase compare
SMc00194 -0.8 -1.7 hypothetical protein compare
SM_b20882 -0.8 -1.4 hypothetical protein compare
SMa1381 -0.8 -2.1 oxidase compare
SMa0643 -0.8 -0.9 transposase compare
SM_b21633 -0.8 -0.7 enoyl-CoA hydratase compare
SM_b20485 -0.8 -4.5 sugar ABC transporter ATP-binding protein compare
SMc01939 -0.8 -0.6 urease subunit beta compare
SMc00228 -0.8 -5.8 ATP-dependent DNA helicase RecG compare
SMc00656 -0.8 -0.8 hypothetical protein compare
SMa0265 -0.8 -1.4 dehydrogenase compare
SMc02739 -0.8 -2.3 glycine betaine transport ATP-binding ABC transporter protein compare
SMc00514 -0.8 -2.0 monooxygenase compare
SMc01831 -0.8 -2.0 urease accessory protein compare
SM_b20595 -0.8 -2.5 cell division protein FtsK compare
SM_b21591 -0.8 -1.0 GntR family transcriptional regulator compare
SM_b20143 -0.8 -0.8 oligopeptide ABC transporter permease compare
SMa0933 -0.8 -1.3 TraC conjugal transfer protein compare
SMc01723 -0.8 -1.2 hypothetical protein compare
SMc02102 -0.8 -2.0 hypothetical protein compare
SMc02614 -0.8 -1.8 hypothetical protein compare
SMc00396 -0.8 -1.7 hypothetical protein compare
SMc02077 -0.8 -0.9 exodeoxyribonuclease III protein compare
SM_b20400 -0.8 -1.7 hypothetical protein compare
SMc02115 -0.8 -0.5 hypothetical protein compare
SMc01438 -0.8 -2.2 protease precursor signal peptide protein compare
SMc00184 -0.8 -2.9 tRNA/rRNA methyltransferase compare
SMa0144 -0.8 -0.6 hypothetical protein compare
SMc00296 -0.8 -3.8 POLY3-hydroxybutyrate polymerase compare
SMc02354 -0.8 -2.2 hypothetical protein compare
SMc02812 -0.8 -0.9 hypothetical protein compare
SM_b20324 -0.8 -3.7 ThuR, regulatory protein for trehalosemaltose transport system compare
SMc04406 -0.8 -1.3 hypothetical protein compare
SMc03006 -0.8 -0.7 chemotaxis regulator protein compare
SMc04040 -0.8 -1.3 heat shock protein compare
SMc02658 -0.8 -1.4 hypothetical protein compare
SMc04014 -0.7 -2.3 hypothetical protein compare
SMa0748 -0.7 -0.9 MucR family transcriptional regulator compare
SMc02248 -0.7 -1.2 transcriptional regulator compare
SMc00806 -0.7 -1.2 hypothetical protein compare
SM_b20884 -0.7 -1.6 hypothetical protein compare
SMa1933 -0.7 -1.5 LysR family transcriptional regulator compare
SM_b20006 -0.7 -1.4 hypothetical protein compare
SMa0087 -0.7 -1.5 hypothetical protein compare
SMa1513 -0.7 -3.6 ABC transporter permease compare
SMc01644 -0.7 -1.8 ABC transporter permease compare
SM_b21035 -0.7 -2.6 hypothetical protein compare
SMc02071 -0.7 -1.1 hydrolase glycosidase compare
SMc03879 -0.7 -2.5 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (from data) compare
SMc02569 -0.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
SMc00191 -0.7 -1.0 hypothetical protein compare
SMc00025 -0.7 -3.4 pyruvate phosphate dikinase compare
SMa1526 -0.7 -2.0 NuoE2 NADH I chain E compare
SMc01461 -0.7 -3.2 DNA helicase II protein compare
SMa0659 -0.7 -1.0 cytochrome c binding protein, carboxyl terminus compare
SMc02476 -0.7 -1.7 hypothetical protein compare
SMa0647 -0.7 -1.2 hypothetical protein compare
SMc01216 -0.7 -1.6 hypothetical protein compare
SMc04169 -0.7 -3.7 transcriptional regulator compare
SMc02470 -0.7 -3.6 transcriptional regulator compare
SMa0421 -0.7 -1.8 hypothetical protein compare
SM_b20628 -0.7 -2.3 hypothetical protein compare
SM_b20703 -0.7 -1.5 hypothetical protein compare
SM_b20303 -0.7 -1.5 hypothetical protein compare
SMa1323 -0.7 -1.1 Transcription regulator compare
SMa0886 -0.7 -0.6 hypothetical protein compare
SMa5011 -0.7 -1.3 oxidoreductase compare
SMc04052 -0.7 -0.8 transcriptional regulator compare
SMc02107 -0.7 -0.7 hypothetical protein compare
SMa2168 -0.7 -0.8 tRNA-Met compare
SMc01558 -0.7 -1.3 hypothetical protein compare
SMc04112 -0.6 -2.2 pilus assembly signal peptide protein compare
SM_b21480 -0.6 -0.7 hypothetical protein compare
SM_b20690 -0.6 -1.1 hypothetical protein compare
SMc02978 -0.6 -1.9 hypothetical protein compare
SMc03051 -0.6 -1.4 flagellar biosynthesis repressor FlbT compare
SM_b20221 -0.6 -1.9 epoxide hydrolase compare
SMc03182 -0.6 -1.8 pH adaptation potassium efflux system E transmembrane protein compare
SMc01428 -0.6 -1.1 cold shock transcription regulator protein compare
SMc03293 -0.6 -1.4 hypothetical protein compare
SMc01948 -0.6 -1.9 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMc01651 -0.6 -1.3 transcriptional regulator compare
SMa2281 -0.6 -1.3 hypothetical protein compare
SM_b20822 -0.6 -2.4 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc00073 -0.6 -1.0 hypothetical protein compare
SMc02114 -0.6 -1.6 hypothetical protein compare
SM_b21421 -0.6 -1.6 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc04404 -0.6 -0.7 amino acid efflux transmembrane protein compare
SM_b20823 -0.6 -3.0 cell surface saccharide synthesis protein compare
SMc01447 -0.6 -0.6 hypothetical protein compare
SMa0121 -0.6 -0.9 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Paraquat dichloride in Sinorhizobium meliloti 1021

For stress Paraquat dichloride across organisms