Experiment set1IT043 for Sinorhizobium meliloti 1021

Compare to:

LB with Paraquat dichloride 0.2 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
SMc04003 +7.8 15.2 50S ribosomal protein L36 compare
SMc00349 +6.8 42.2 GTP-binding protein LepA compare
SMc04382 +6.7 40.2 beta-(1,2)-glucan production associated transmembrane protein compare
SMc03900 +6.6 53.5 cyclic beta-1,2-glucan ABc transporter compare
SMc00647 +6.6 47.8 ribosomal large subunit pseudouridine synthase compare
SMc03855 +6.2 32.1 hypothetical protein compare
SMc00458 +5.4 41.9 transcriptional regulator compare
SMc03069 +5.4 28.4 6-phosphogluconolactonase compare
SMc00565 +5.3 10.9 50S ribosomal protein L9 compare
SMc02050 +5.1 34.8 trigger factor compare
SMc01099 +5.0 21.1 tRNA pseudouridine synthase A compare
SMc00711 +5.0 25.3 cyclohexadienyl dehydrogenase compare
SMc02695 +5.0 21.3 GTP-dependent nucleic acid-binding protein EngD compare
SMc02055 +4.9 6.4 phytoene synthase compare
SMc02137 +4.7 21.4 ornithine carbamoyltransferase compare
SMc01215 +4.7 20.2 carbamoyl phosphate synthase large subunit compare
SMc04385 +4.6 16.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00150 +4.5 42.5 hypothetical protein compare
SMc00169 +4.4 35.2 malic enzyme compare
SMc03159 +4.3 20.8 ABC transporter ATP-binding protein compare
SMc03157 +4.2 26.8 outer membrane lipoprotein transmembrane compare
SMc03826 +4.1 17.1 argininosuccinate synthase compare
SMc02659 +4.1 16.7 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc00131 +3.9 29.3 transcriptional regulator compare
SMc02112 +3.8 21.3 hypothetical protein compare
SMc01569 +3.8 16.1 carbamoyl phosphate synthase small subunit compare
SMc01124 +3.7 12.4 PII uridylyl-transferase compare
SMc02095 +3.6 17.6 hypothetical protein compare
SMc00129 +3.4 17.1 sensor histidine kinase compare
SMc00566 +3.3 8.9 hypothetical protein compare
SMc01206 +3.3 6.1 queuine tRNA-ribosyltransferase compare
SMc01801 +3.3 6.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc03158 +3.0 8.0 ABC transporter permease compare
SMc02056 +2.9 3.9 hypothetical protein compare
SMa2020 +2.9 8.2 Transcriptional regulator compare
SM_b21397 +2.9 1.4 hypothetical protein compare
SMc00495 +2.8 12.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02309 +2.8 15.4 arsenate reductase compare
SMc03863 +2.7 3.1 50S ribosomal protein L19 compare
SMc02503 +2.6 7.2 hypothetical protein compare
SMc04383 +2.6 8.1 putative hydrolase, required for lysine catabolism (from data) compare
SMc00427 +2.5 11.4 peptide chain release factor RF-3 protein compare
SMc02138 +2.5 7.2 acetylornithine transaminase compare
SMc00710 +2.5 6.8 histidinol-phosphate aminotransferase compare
SMc00017 +2.4 4.6 homoserine kinase compare
SMc01207 +2.4 8.2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02367 +2.4 12.5 sensor histidine kinase transmembrane protein compare
SMc03930 +2.4 4.8 sarcosine oxidase subunit gamma compare
SMc04001 +2.3 3.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc02366 +2.3 17.4 transcriptional regulator compare
SMc02166 +2.2 15.5 dihydroorotase compare
SMc01726 +2.0 9.8 acetylglutamate kinase compare
SMc00522 +2.0 9.2 ATP-dependent RNA helicase compare
SM_b20131 +2.0 1.9 oxidoreductase compare
SMc03933 +2.0 13.4 sarcosine oxidase subunit B protein compare
SMc02365 +2.0 10.5 protease precursor protein compare
SMc04235 +2.0 8.8 tRNA-dihydrouridine synthase A compare
SMc02504 +1.9 5.8 transcriptional regulator compare
SMc03931 +1.9 15.5 sarcosine oxidase subunit alpha compare
SMc00026 +1.9 11.0 hypothetical protein compare
SMc00321 +1.9 11.9 tRNA pseudouridine synthase B compare
SM_b21181 +1.8 7.7 glutaryl-CoA dehydrogenase compare
SMc02757 +1.8 3.1 hypothetical protein compare
SMc01275 +1.8 6.0 ribosomal large subunit pseudouridine synthase C protein compare
SMa0854 +1.8 1.5 3-ketoacyl-ACP reductase compare
SMc00403 +1.8 9.2 NOL1/NOP2/SUN family signature protein compare
SMc02245 +1.8 9.5 dihydroorotate dehydrogenase 2 compare
SMc01852 +1.7 11.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SM_b21170 +1.7 7.8 guanylate kinase compare
SMc04384 +1.7 3.1 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc03932 +1.7 6.1 sarcosine oxidase subunit delta compare
SMc01907 +1.7 13.0 hypothetical protein compare
SMc02766 +1.7 9.9 tryptophan synthase subunit beta compare
SMc01439 +1.7 7.7 hypothetical protein compare
SMc00761 +1.7 11.5 oxidoreductase compare
SMc02640 +1.7 6.2 UDP-glucuronic acid epimerase compare
SMc02058 +1.6 4.0 YAJC protein compare
SMc00070 +1.6 7.2 signal peptide protein compare
SMc04085 +1.6 5.0 hypothetical protein compare
SMc02765 +1.6 11.3 tryptophan synthase subunit alpha compare
SMc03973 +1.6 7.4 hypothetical protein compare
SMc00010 +1.6 2.1 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00404 +1.6 2.1 hypothetical protein compare
SMc01222 +1.5 3.6 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02246 +1.5 1.8 hypothetical protein compare
SMc02983 +1.5 8.1 ornithine, DAP, or arginine decarboxylase compare
SMc03899 +1.5 2.0 hypothetical protein compare
SMc00998 +1.5 11.4 signal peptide protein compare
SMc04094 +1.5 3.7 hypothetical protein compare
SMc04454 +1.5 8.4 ABC transporter ATP-binding protein compare
SMc00450 +1.5 4.6 protoheme IX farnesyltransferase compare
SMc00187 +1.4 3.9 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc01193 +1.4 6.3 hypothetical protein compare
SM_b20146 +1.4 6.0 pyridoxal phosphate biosynthetic protein compare
SMa1095 +1.4 1.9 hypothetical protein compare
SMa5000 +1.4 1.4 hypothetical protein compare
SMc02478 +1.4 8.5 hypothetical protein compare
SMc00320 +1.3 5.4 ribosome-binding factor A compare
SM_b20815 +1.3 1.8 outer membrane protein assembly protein compare
SM_b21374 +1.3 2.9 tagatose kinase (EC 2.7.1.101) (from data) compare
SMc00325 +1.3 6.6 hypothetical protein compare
SMc03111 +1.3 7.7 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SM_b20613 +1.3 7.1 C4-dicarboxylate transport transcriptional regulator compare
SMc01846 +1.3 7.6 hydrolase glycosidase compare
SMc02273 +1.3 10.5 fatty acid synthase transmembrane protein compare
SMa1245 +1.2 3.3 Crp/fnr-like transcriptional regulator compare
SM_b20897 +1.2 1.7 hypothetical protein compare
SMc04441 +1.2 1.1 hypothetical protein compare
SMc01131 +1.2 3.1 hypothetical protein compare
SMc02793 +1.2 7.6 hypothetical protein compare
SMc00009 +1.2 5.0 cytochrome C oxidase subunit II protein compare
SMc01587 +1.2 1.3 hypothetical protein compare
SMa0314 +1.2 2.3 hypothetical protein compare
SMc00302 +1.2 3.4 hypothetical protein compare
SMc02272 +1.2 7.9 acyl-transferase transferase compare
SMc00482 +1.2 6.2 hypothetical protein compare
SMc04391 +1.2 2.1 3-ketoacyl-ACP reductase compare
SM_b21265 +1.2 4.7 glycosyltransferase compare
SMc03792 +1.1 1.2 hypothetical protein compare
SM_b21266 +1.1 5.1 hypothetical protein compare
SM_b21487 +1.1 7.5 cytochrome o ubiquinol oxidase subunit II compare
SMc02280 +1.1 1.7 hypothetical protein compare
SMc04000 +1.1 2.3 hypothetical protein compare
SMc01120 +1.1 3.2 hypothetical protein compare
SMc01850 +1.1 1.6 hypothetical protein compare
SMc02755 +1.1 4.4 S-adenosyl-L-homocysteine hydrolase compare
SMc03831 +1.1 5.0 hypothetical protein compare
SMc04002 +1.1 4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SM_b20261 +1.1 1.5 malate dehydrogenase compare
SM_b21208 +1.1 1.8 TetR family transcriptional regulator compare
SMc00838 +1.0 1.6 hypothetical protein compare
SMc01613 +1.0 3.8 ribose-5-phosphate isomerase B compare
SMc01987 +1.0 7.5 dehydrogenase compare
SMc01522 +1.0 2.4 hypothetical protein compare
SMc03979 +1.0 2.1 glyceraldehyde-3-phosphate dehydrogenase compare
SMc03153 +1.0 3.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc00414 +1.0 4.9 hypothetical protein compare
SMc01765 +1.0 1.7 hypothetical protein compare
SMc02057 +1.0 5.0 preprotein translocase subunit SecD/SecF compare
SM_b21304 +1.0 5.1 NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein compare
SMa1921 +1.0 1.8 hypothetical protein compare
SMa0833 +1.0 1.4 hypothetical protein compare
SMc00727 +0.9 6.1 3-hydroxybutyryl-CoA dehydrogenase compare
SMa1365 +0.9 1.5 ATP-binding protein compare
SMc01024 +0.9 1.5 preprotein translocase subunit SecG compare
SMc00554 +0.9 3.2 amidophosphoribosyltransferase compare
SMc04220 +0.9 1.5 transcriptional regulator compare
SMc02181 +0.9 6.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
SM_b21192 +0.9 5.8 fructose-1,6-bisphosphate aldolase compare
SMa1765 +0.9 1.7 hypothetical protein compare
SMc02380 +0.9 1.7 oxidoreductase transmembrane protein compare
SMc04246 +0.9 2.1 transmembrane signal peptide protein compare
SM_b21264 +0.9 6.8 hypothetical protein compare
SMc01834 +0.9 1.0 hypothetical protein compare
SMc02384 +0.9 6.5 glycosyltransferase transmembrane protein compare
SMa0771 +0.9 1.9 hypothetical protein compare
SMc00412 +0.9 3.6 orotidine 5'-phosphate decarboxylase compare
SMc00093 +0.9 6.6 choline dehydrogenase compare
SMc02577 +0.9 4.5 ATP-dependent protease ATP-binding subunit HslU compare
SM_b20701 +0.9 1.1 hypothetical protein compare
SMc02497 +0.9 1.9 hypothetical protein compare
SMc00973 +0.8 2.2 hypothetical protein compare
SMc04232 +0.8 1.2 glycine rich transmembrane protein compare
SMc00001 +0.8 2.4 hypothetical protein compare
SMc05015 +0.8 0.9 recombinase compare
SMc01440 +0.8 4.0 hydrolase serine protease transmembrane protein compare
SMc01799 +0.8 3.2 signal peptide protein compare
SM_b21448 +0.8 1.6 DNA polymerase related protein compare
SMc04381 +0.8 2.9 hypothetical protein compare
SMc04348 +0.8 2.4 transcriptional regulator compare
SMc00576 +0.8 2.0 hypothetical protein compare
SMc01256 +0.8 4.8 L-serine dehydratase compare
SM_b21256 +0.8 6.0 nucleotide sugar oxidase compare
SMc01223 +0.8 1.5 transcriptional regulator compare
SM_b21585 +0.8 1.6 hypothetical protein compare
SM_b20611 +0.8 3.9 C4-dicarboxylate transporter DctA compare
SM_b21252 +0.8 6.3 glycosyltransferase compare
SM_b20930 +0.8 2.2 sugar uptake ABC transporter ATP-binding protein compare
SMa2029 +0.8 1.1 amidohydrolase compare
SM_b20347 +0.8 2.1 transcriptional regulator compare
SM_b21372 +0.8 5.4 LacI family transcriptional regulator compare
SMc03777 +0.8 3.1 gamma-glutamyl phosphate reductase compare
SMc03967 +0.8 0.8 Holliday junction resolvase compare
SMc01519 +0.8 2.2 hypothetical protein compare
SMc01441 +0.8 3.5 membrane bound protease compare
SMc04221 +0.8 2.2 hypothetical protein compare
SMc03935 +0.8 3.6 hypothetical protein compare
SMc02136 +0.8 3.7 Hsp33-like chaperonin compare
SMc00904 +0.8 3.0 hypothetical protein compare
SMc01273 +0.8 5.7 S-formylglutathione hydrolase compare
SMc02575 +0.8 3.9 ATP-dependent protease peptidase subunit compare
SMc04357 +0.8 1.6 hypothetical protein compare
SMc00800 +0.7 1.1 hypothetical protein compare
SMc03008 +0.7 1.1 chemotaxis protein compare
SMc00983 +0.7 1.8 hypothetical protein compare
SMc04166 +0.7 1.4 hypothetical protein compare
SMc00826 +0.7 2.5 16S ribosomal RNA methyltransferase RsmE compare
SMc00725 +0.7 1.8 argininosuccinate lyase compare
SMc03999 +0.7 2.4 hypothetical protein compare
SMc04453 +0.7 1.0 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Paraquat dichloride in Sinorhizobium meliloti 1021

For stress Paraquat dichloride across organisms