Experiment set1IT043 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00040 -6.4 -7.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS02035 -6.0 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08005 -5.9 -15.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00050 -5.8 -8.8 AAA family ATPase compare
MMJJ_RS07670 -5.7 -21.6 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07665 -5.6 -29.2 formate dehydrogenase subunit alpha compare
MMJJ_RS08855 -5.6 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00060 -5.6 -19.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00045 -5.5 -14.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00055 -5.4 -10.3 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS07660 -5.3 -8.9 carbonic anhydrase compare
MMJJ_RS06915 -5.3 -15.6 helix-turn-helix domain-containing protein compare
MMJJ_RS05155 -5.3 -3.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00035 -5.1 -20.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00935 -5.0 -16.6 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS03920 -5.0 -17.6 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00075 -4.9 -13.3 AAA family ATPase compare
MMJJ_RS07650 -4.9 -23.1 formate/nitrite transporter family protein compare
MMJJ_RS07655 -4.9 -13.8 hypothetical protein compare
MMJJ_RS02055 -4.8 -14.2 GTP 3',8-cyclase MoaA compare
MMJJ_RS06725 -4.8 -6.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08080 -4.8 -3.3 TIGR00300 family protein compare
MMJJ_RS06050 -4.8 -13.0 molybdopterin molybdotransferase MoeA compare
MMJJ_RS07995 -4.8 -8.5 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00065 -4.8 -13.8 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00080 -4.7 -18.0 DUF166 domain-containing protein compare
MMJJ_RS01810 -4.6 -1.9 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS07635 -4.5 -14.9 response regulator transcription factor compare
MMJJ_RS05445 -4.5 -2.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07975 -4.5 -12.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS00275 -4.4 -2.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04200 -4.4 -4.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03895 -4.3 -2.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS06510 -4.3 -2.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS08065 -4.3 -2.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS04485 -4.3 -10.7 riboflavin synthase compare
MMJJ_RS03620 -4.3 -2.9 DUF2097 domain-containing protein compare
MMJJ_RS07640 -4.3 -23.7 cache domain-containing protein compare
MMJJ_RS05535 -4.3 -12.7 hypothetical protein compare
MMJJ_RS04050 -4.3 -1.8 dihydroneopterin aldolase family protein compare
MMJJ_RS08020 -4.2 -8.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS02920 -4.2 -2.0 30S ribosomal protein S27ae compare
MMJJ_RS05065 -4.2 -4.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08840 -4.2 -2.9 calcium/sodium antiporter compare
MMJJ_RS06860 -4.2 -4.8 hypothetical protein compare
MMJJ_RS00070 -4.1 -3.6 CooT family nickel-binding protein compare
MMJJ_RS03065 -4.1 -13.2 CBS domain-containing protein compare
MMJJ_RS01935 -4.1 -2.8 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06270 -4.1 -7.7 dethiobiotin synthase compare
MMJJ_RS06240 -4.0 -2.4 dihydropteroate synthase-like protein compare
MMJJ_RS02045 -4.0 -2.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06930 -4.0 -2.4 type II methionyl aminopeptidase compare
MMJJ_RS00370 -4.0 -1.9 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08535 -4.0 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS06855 -4.0 -1.7 DUF2104 domain-containing protein compare
MMJJ_RS06155 -3.9 -4.6 phosphatidylglycerophosphatase A compare
MMJJ_RS07720 -3.9 -1.9 UPF0058 family protein compare
MMJJ_RS08000 -3.9 -9.7 HesA/MoeB/ThiF family protein compare
MMJJ_RS01750 -3.9 -2.3 ferrous iron transport protein A compare
MMJJ_RS08625 -3.9 -2.7 magnesium/cobalt transporter CorA compare
MMJJ_RS02190 -3.8 -18.9 molybdopterin biosynthesis protein compare
MMJJ_RS08155 -3.8 -2.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05575 -3.8 -4.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06375 -3.8 -3.7 UbiX family flavin prenyltransferase compare
MMJJ_RS03500 -3.8 -11.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS04155 -3.8 -2.6 hypothetical protein compare
MMJJ_RS04800 -3.8 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08095 -3.8 -2.6 cobyric acid synthase CobQ compare
MMJJ_RS08035 -3.7 -8.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS09190 -3.7 -1.5 tryptophan synthase subunit beta compare
MMJJ_RS06490 -3.7 -2.4 methanogenesis marker 2 protein compare
MMJJ_RS03055 -3.7 -2.7 hypothetical protein compare
MMJJ_RS04685 -3.7 -6.1 carbamoyltransferase HypF compare
MMJJ_RS05260 -3.6 -2.5 ATP-grasp domain-containing protein compare
MMJJ_RS03865 -3.6 -1.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS00450 -3.6 -2.4 DUF126 domain-containing protein compare
MMJJ_RS03115 -3.6 -8.1 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS09375 -3.6 -1.5 hypothetical protein compare
MMJJ_RS06875 -3.5 -1.9 hypothetical protein compare
MMJJ_RS03270 -3.5 -1.7 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05780 -3.5 -2.4 flagellin compare
MMJJ_RS04650 -3.5 -4.7 nitrogenase iron protein compare
MMJJ_RS00580 -3.5 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06600 -3.5 -3.1 DUF555 domain-containing protein compare
MMJJ_RS03125 -3.4 -4.6 GMC oxidoreductase compare
MMJJ_RS05995 -3.4 -1.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS07245 -3.4 -6.0 amidohydrolase family protein compare
MMJJ_RS04145 -3.4 -10.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS02200 -3.4 -9.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS00645 -3.4 -12.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05190 -3.3 -10.8 gamma carbonic anhydrase family protein compare
MMJJ_RS03580 -3.3 -3.1 TIGR00303 family protein compare
MMJJ_RS04475 -3.3 -5.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06485 -3.3 -2.3 phosphoglycerate kinase compare
MMJJ_RS06015 -3.3 -10.6 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS05950 -3.3 -2.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03900 -3.3 -12.8 phosphosulfolactate synthase compare
MMJJ_RS00355 -3.3 -2.7 ribonuclease P protein component 4 compare
MMJJ_RS07980 -3.2 -11.3 biotin synthase BioB compare
MMJJ_RS04995 -3.2 -4.4 Tfx family DNA-binding protein compare
MMJJ_RS03110 -3.2 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06010 -3.2 -6.8 hypothetical protein compare
MMJJ_RS05595 -3.2 -3.8 hypothetical protein compare
MMJJ_RS06260 -3.2 -10.1 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06805 -3.2 -1.9 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS03760 -3.2 -2.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06180 -3.2 -2.2 tryptophan--tRNA ligase compare
MMJJ_RS03670 -3.2 -3.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07355 -3.2 -7.4 MoaD/ThiS family protein compare
MMJJ_RS08795 -3.2 -2.0 phosphoglucosamine mutase compare
MMJJ_RS03630 -3.1 -13.1 AMP phosphorylase compare
MMJJ_RS03875 -3.1 -3.6 CBS domain-containing protein compare
MMJJ_RS01600 -3.1 -2.0 radical SAM protein compare
MMJJ_RS08055 -3.1 -6.1 methanogenesis marker 14 protein compare
MMJJ_RS02090 -3.1 -4.6 tyramine--L-glutamate ligase compare
MMJJ_RS01475 -3.1 -1.7 signal recognition particle-docking protein FtsY compare
MMJJ_RS04970 -3.1 -1.5 DUF655 domain-containing protein compare
MMJJ_RS07785 -3.1 -2.0 fumarate reductase subunit A compare
MMJJ_RS00560 -3.1 -3.5 homoisocitrate dehydrogenase compare
MMJJ_RS03170 -3.0 -9.8 DUF5612 domain-containing protein compare
MMJJ_RS00345 -3.0 -10.8 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS04700 -3.0 -6.5 deoxyhypusine synthase compare
MMJJ_RS08250 -3.0 -5.3 hydrogenase maturation peptidase HycI compare
MMJJ_RS05810 -3.0 -3.6 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS08850 -3.0 -1.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08925 -3.0 -12.1 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS04595 -3.0 -5.0 hypothetical protein compare
MMJJ_RS06625 -3.0 -1.4 pyruvate synthase subunit PorB compare
MMJJ_RS04150 -3.0 -2.9 DUF5379 domain-containing protein compare
MMJJ_RS06700 -3.0 -6.4 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07360 -3.0 -1.2 TIGR00269 family protein compare
MMJJ_RS03150 -3.0 -6.1 2-phospho-L-lactate transferase compare
MMJJ_RS06040 -3.0 -2.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03230 -2.9 -4.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07950 -2.9 -3.1 4Fe-4S binding protein compare
MMJJ_RS03190 -2.9 -2.0 phosphopyruvate hydratase compare
MMJJ_RS00125 -2.9 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS05540 -2.9 -19.0 LysR family transcriptional regulator compare
MMJJ_RS08870 -2.9 -1.2 2-isopropylmalate synthase compare
MMJJ_RS01360 -2.9 -1.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07470 -2.9 -2.3 50S ribosome-binding GTPase compare
MMJJ_RS03765 -2.9 -8.6 hypothetical protein compare
MMJJ_RS06110 -2.9 -1.7 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06695 -2.9 -2.6 amidohydrolase compare
MMJJ_RS05770 -2.8 -2.5 flagellar protein D compare
MMJJ_RS08150 -2.8 -15.5 M24 family metallopeptidase compare
MMJJ_RS03200 -2.8 -2.9 uroporphyrinogen-III synthase compare
MMJJ_RS08500 -2.8 -8.0 L-sulfolactate dehydrogenase compare
MMJJ_RS03615 -2.8 -1.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS09055 -2.8 -8.9 NFACT family protein compare
MMJJ_RS00475 -2.8 -1.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06020 -2.8 -6.2 hypothetical protein compare
MMJJ_RS04520 -2.8 -4.9 coenzyme F430 synthase compare
MMJJ_RS00600 -2.8 -2.2 hydroxymethylbilane synthase compare
MMJJ_RS05720 -2.8 -1.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00205 -2.8 -6.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS07170 -2.8 -1.9 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS03005 -2.8 -3.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04790 -2.7 -4.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06255 -2.7 -5.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS00570 -2.7 -1.4 ribonuclease P compare
MMJJ_RS05070 -2.7 -1.9 DNA primase catalytic subunit PriS compare
MMJJ_RS07155 -2.7 -10.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00270 -2.7 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00215 -2.7 -1.6 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06265 -2.7 -13.6 8-amino-7-oxononanoate synthase compare
MMJJ_RS01350 -2.7 -7.1 sodium:proton antiporter compare
MMJJ_RS08010 -2.6 -6.7 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06835 -2.6 -8.8 4Fe-4S binding protein compare
MMJJ_RS08320 -2.6 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05415 -2.6 -1.4 hypothetical protein compare
MMJJ_RS08480 -2.6 -7.8 hydroxyethylthiazole kinase compare
MMJJ_RS03060 -2.6 -3.3 methanogenesis marker 7 protein compare
MMJJ_RS01690 -2.6 -2.4 methanogenesis marker 12 protein compare
MMJJ_RS08405 -2.6 -12.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06030 -2.6 -5.6 4Fe-4S binding protein compare
MMJJ_RS02040 -2.5 -1.7 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06840 -2.5 -2.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01200 -2.5 -1.7 PRC-barrel domain-containing protein compare
MMJJ_RS06715 -2.5 -11.2 lactaldehyde dehydrogenase compare
MMJJ_RS05330 -2.5 -1.6 DNA polymerase II large subunit compare
MMJJ_RS07705 -2.5 -1.7 GTP-binding protein EngB compare
MMJJ_RS07725 -2.5 -6.9 DNA primase DnaG compare
MMJJ_RS04980 -2.5 -4.3 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS02935 -2.5 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00425 -2.5 -5.6 hypothetical protein compare
MMJJ_RS06250 -2.5 -1.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS03660 -2.4 -3.2 DUF447 family protein compare
MMJJ_RS07265 -2.4 -10.7 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS06025 -2.4 -15.2 4Fe-4S binding protein compare
MMJJ_RS06910 -2.4 -1.4 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07350 -2.4 -2.8 4Fe-4S binding protein compare
MMJJ_RS06005 -2.4 -8.5 energy conserving hydrogenase EhbF compare
MMJJ_RS05610 -2.4 -1.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00550 -2.4 -7.5 AIR synthase-related protein compare
MMJJ_RS06635 -2.4 -14.0 4Fe-4S binding protein compare
MMJJ_RS06760 -2.4 -4.1 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07275 -2.4 -1.6 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05620 -2.3 -2.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06035 -2.3 -8.8 NADH-quinone oxidoreductase subunit B family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms