Experiment set1IT043 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS16480 -7.6 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS08660 -7.3 -5.1 ketol-acid reductoisomerase compare
HSERO_RS01815 -7.1 -6.9 gamma-glutamyl kinase compare
HSERO_RS17815 -6.7 -5.6 glycosyl transferase compare
HSERO_RS20345 -6.5 -4.5 histidinol dehydrogenase compare
HSERO_RS20350 -6.4 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS08650 -6.4 -8.2 acetolactate synthase compare
HSERO_RS15555 -6.3 -6.0 oxidoreductase compare
HSERO_RS16515 -6.2 -8.5 isopropylmalate isomerase compare
HSERO_RS20330 -6.1 -5.9 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS15550 -6.0 -4.2 sulfite reductase compare
HSERO_RS19510 -6.0 -7.1 threonine dehydratase compare
HSERO_RS20310 -6.0 -3.9 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS17810 -6.0 -2.1 glycosyl transferase compare
HSERO_RS19445 -6.0 -9.1 anthranilate phosphoribosyltransferase compare
HSERO_RS17185 -5.9 -9.9 2-isopropylmalate synthase compare
HSERO_RS18990 -5.9 -6.8 pyrroline-5-carboxylate reductase compare
HSERO_RS15575 -5.6 -2.0 uroporphyrin-III C-methyltransferase compare
HSERO_RS14670 -5.6 -14.5 phosphoenolpyruvate carboxylase compare
HSERO_RS07160 -5.6 -5.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS16500 -5.5 -6.6 3-isopropylmalate dehydrogenase compare
HSERO_RS20920 -5.3 -8.6 3-dehydroquinate synthase compare
HSERO_RS16885 -5.3 -1.9 magnesium-transporting ATPase compare
HSERO_RS02330 -5.3 -8.7 aspartate carbamoyltransferase compare
HSERO_RS18430 -5.2 -6.8 chorismate mutase compare
HSERO_RS00455 -5.2 -7.9 homoserine O-acetyltransferase compare
HSERO_RS19595 -5.1 -11.9 glutamate synthase compare
HSERO_RS15570 -5.1 -7.8 sulfate adenylyltransferase compare
HSERO_RS20315 -5.0 -5.4 imidazole glycerol phosphate synthase compare
HSERO_RS15630 -5.0 -1.8 exodeoxyribonuclease III compare
HSERO_RS00795 -5.0 -3.4 glycerol-3-phosphate dehydrogenase compare
HSERO_RS20320 -5.0 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS15565 -4.9 -4.5 sulfate adenylyltransferase subunit 2 compare
HSERO_RS19450 -4.9 -4.0 indole-3-glycerol-phosphate synthase compare
HSERO_RS16505 -4.8 -4.0 3-isopropylmalate dehydratase small subunit compare
HSERO_RS19435 -4.7 -7.8 anthranilate synthase subunit I compare
HSERO_RS08405 -4.7 -2.3 membrane protein compare
HSERO_RS16475 -4.6 -2.2 tryptophan synthase subunit alpha compare
HSERO_RS01935 -4.5 -6.5 3-dehydroquinate dehydratase compare
HSERO_RS15560 -4.5 -5.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS15040 -4.4 -9.2 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS10805 -4.4 -2.6 succinyldiaminopimelate aminotransferase compare
HSERO_RS02650 -4.3 -8.7 dihydroxy-acid dehydratase compare
HSERO_RS17980 -4.1 -3.3 GTP-binding protein compare
HSERO_RS19630 -4.0 -1.4 AMP nucleosidase compare
HSERO_RS15585 -4.0 -11.3 cobalamin biosynthesis protein CbiX compare
HSERO_RS00800 -3.9 -4.4 hypothetical protein compare
HSERO_RS10960 -3.8 -4.4 PEP synthetase regulatory protein compare
HSERO_RS16470 -3.7 -3.8 tryptophan synthase subunit alpha compare
HSERO_RS17110 -3.7 -5.1 ribonuclease H compare
HSERO_RS04325 -3.6 -5.7 helicase I compare
HSERO_RS10460 -3.6 -1.8 homoserine dehydrogenase compare
HSERO_RS19590 -3.4 -1.7 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS10455 -3.4 -6.3 aminotransferase compare
HSERO_RS16440 -3.3 -3.0 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS02325 -3.3 -5.1 uracil phosphoribosyltransferase compare
HSERO_RS20325 -3.2 -4.2 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS00815 -3.2 -1.7 sulfurtransferase compare
HSERO_RS01990 -3.0 -6.3 shikimate 5-dehydrogenase compare
HSERO_RS11065 -3.0 -3.6 quinolinate synthetase compare
HSERO_RS04330 -2.8 -7.5 ATP-dependent exonuclease compare
HSERO_RS02260 -2.8 -3.8 DNA polymerase I compare
HSERO_RS13960 -2.7 -4.0 hypothetical protein compare
HSERO_RS17105 -2.6 -2.8 DNA polymerase III subunit epsilon compare
HSERO_RS10850 -2.5 -4.5 ABC transporter compare
HSERO_RS03540 -2.4 -1.6 dimethyladenosine transferase compare
HSERO_RS08115 -2.4 -1.8 acyl-CoA-binding protein compare
HSERO_RS11070 -2.4 -7.3 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS20355 -2.3 -2.5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS20625 -2.3 -2.2 phenylacetate-CoA oxygenase compare
HSERO_RS04265 -2.3 -2.3 tyrosine recombinase XerD compare
HSERO_RS10650 -2.2 -4.0 hypothetical protein compare
HSERO_RS16370 -2.1 -1.4 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS10815 -2.1 -6.3 chromosome segregation protein SMC compare
HSERO_RS19525 -2.1 -3.1 PTS sugar transporter subunit IIA compare
HSERO_RS08655 -2.1 -1.4 acetolactate synthase compare
HSERO_RS16535 -2.1 -3.4 hypothetical protein compare
HSERO_RS18455 -2.1 -3.6 phosphoglycolate phosphatase compare
HSERO_RS09050 -2.0 -2.2 2-aminoadipate aminotransferase compare
HSERO_RS18425 -2.0 -2.5 prephenate dehydrogenase compare
HSERO_RS07755 -2.0 -3.8 glutamate racemase compare
HSERO_RS07970 -2.0 -1.3 formyltetrahydrofolate deformylase compare
HSERO_RS23435 -2.0 -2.1 MerR family transcriptional regulator compare
HSERO_RS13240 -2.0 -3.1 cobalamin biosynthesis protein CobD compare
HSERO_RS04340 -1.9 -5.8 gamma-glutamyl ligase compare
HSERO_RS05505 -1.9 -4.3 transcriptional regulator compare
HSERO_RS05515 -1.9 -1.5 glucose-6-phosphate isomerase compare
HSERO_RS09155 -1.9 -6.0 DNA topoisomerase IV subunit B compare
HSERO_RS02215 -1.8 -1.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS02340 -1.7 -11.9 dihydroorotase compare
HSERO_RS10865 -1.6 -5.3 PII uridylyl-transferase compare
HSERO_RS02160 -1.6 -1.4 DNA-dependent helicase compare
HSERO_RS09145 -1.6 -5.0 DNA topoisomerase IV subunit A compare
HSERO_RS11465 -1.5 -2.0 sodium:proton antiporter compare
HSERO_RS14930 -1.5 -1.5 aldolase compare
HSERO_RS15835 -1.5 -0.8 aspartate aminotransferase compare
HSERO_RS06165 -1.5 -4.5 ATP-dependent DNA helicase RecG compare
HSERO_RS17900 -1.5 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS07140 -1.4 -3.4 glutamine-synthetase adenylyltransferase compare
HSERO_RS21525 -1.4 -2.9 alpha/beta hydrolase compare
HSERO_RS13260 -1.4 -2.6 cobinamide adenolsyltransferase compare
HSERO_RS10395 -1.4 -2.3 phosphate transport regulator compare
HSERO_RS09650 -1.4 -1.7 elongation factor 4 compare
HSERO_RS13295 -1.3 -2.5 membrane protein compare
HSERO_RS03270 -1.3 -3.6 protein RecA compare
HSERO_RS13265 -1.3 -2.2 G3E family GTPase compare
HSERO_RS09775 -1.3 -1.4 cobalamin synthase compare
HSERO_RS16450 -1.3 -1.7 colicin V production protein compare
HSERO_RS02090 -1.3 -1.0 Holliday junction DNA helicase RuvA compare
HSERO_RS10720 -1.3 -3.0 alanine acetyltransferase compare
HSERO_RS09455 -1.3 -4.0 NAD synthetase compare
HSERO_RS02145 -1.2 -1.1 ferritin compare
HSERO_RS18875 -1.2 -0.9 ATPase compare
HSERO_RS01095 -1.2 -2.5 hypothetical protein compare
HSERO_RS22440 -1.2 -1.5 hypothetical protein compare
HSERO_RS21340 -1.2 -2.8 septum formation inhibitor protein compare
HSERO_RS02630 -1.2 -2.2 membrane protein compare
HSERO_RS14835 -1.2 -3.9 peptidase M23 compare
HSERO_RS13305 -1.2 -3.8 magnesium chelatase compare
HSERO_RS13335 -1.2 -1.7 hypothetical protein compare
HSERO_RS18685 -1.2 -1.3 hypothetical protein compare
HSERO_RS12215 -1.2 -2.9 alpha/beta hydrolase superfamily protein compare
HSERO_RS04335 -1.2 -2.9 sodium:proton antiporter compare
HSERO_RS13965 -1.2 -2.1 single-stranded DNA exonuclease compare
HSERO_RS00335 -1.2 -2.4 hypothetical protein compare
HSERO_RS12630 -1.2 -2.8 chemotaxis protein CheY compare
HSERO_RS19835 -1.2 -3.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS18550 -1.1 -1.1 excinuclease ATPase subunit compare
HSERO_RS09915 -1.1 -2.9 transcriptional regulator compare
HSERO_RS04270 -1.1 -1.5 membrane protein compare
HSERO_RS17880 -1.1 -2.1 membrane protein compare
HSERO_RS03480 -1.1 -3.3 NAD(P) transhydrogenase subunit alpha compare
HSERO_RS10670 -1.1 -3.6 signal transduction protein compare
HSERO_RS11615 -1.1 -5.5 hypothetical protein compare
HSERO_RS13285 -1.1 -0.7 precorrin-2 C20-methyltransferase compare
HSERO_RS18255 -1.1 -2.5 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS22845 -1.1 -4.2 LysR family transcriptional regulator compare
HSERO_RS09415 -1.1 -2.9 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS15685 -1.1 -6.1 histidine kinase compare
HSERO_RS15680 -1.0 -4.1 chemotaxis protein CheY compare
HSERO_RS05440 -1.0 -0.8 hypothetical protein compare
HSERO_RS12540 -1.0 -3.1 hemerythrin compare
HSERO_RS11435 -1.0 -3.8 IclR family transcriptional regulator compare
HSERO_RS00430 -1.0 -1.3 glutamate--cysteine ligase compare
HSERO_RS13230 -1.0 -1.0 cobyric acid synthase compare
HSERO_RS15180 -1.0 -2.8 transcription-repair coupling factor compare
HSERO_RS09660 -1.0 -1.5 ribonuclease III compare
HSERO_RS22600 -1.0 -1.7 transcriptional regulator compare
HSERO_RS21740 -0.9 -4.1 methionine synthase compare
HSERO_RS03285 -0.9 -1.2 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS13880 -0.9 -1.0 hypothetical protein compare
HSERO_RS18600 -0.9 -0.9 transcriptional regulator compare
HSERO_RS09795 -0.9 -3.6 carbon starvation protein A compare
HSERO_RS10400 -0.9 -3.7 inorganic phosphate transporter compare
HSERO_RS13235 -0.9 -2.7 threonine-phosphate decarboxylase compare
HSERO_RS20985 -0.9 -1.1 serine acetyltransferase compare
HSERO_RS16485 -0.9 -3.3 tRNA pseudouridine synthase A compare
HSERO_RS02255 -0.9 -2.4 decarboxylase compare
HSERO_RS07015 -0.9 -4.2 isocitrate dehydrogenase compare
HSERO_RS01785 -0.9 -1.6 hypothetical protein compare
HSERO_RS19550 -0.9 -2.6 hypothetical protein compare
HSERO_RS09780 -0.9 -1.4 phosphoglycerate mutase compare
HSERO_RS18200 -0.9 -2.0 RNA-binding protein compare
HSERO_RS20820 -0.9 -0.8 ABC transporter ATP-binding protein compare
HSERO_RS07005 -0.9 -2.5 hypothetical protein compare
HSERO_RS14305 -0.9 -1.5 chemotaxis protein CheY compare
HSERO_RS12775 -0.9 -2.5 ABC transporter substrate-binding protein compare
HSERO_RS01780 -0.9 -0.8 translation initiation factor IF-1 compare
HSERO_RS18860 -0.9 -2.4 potassium-transporting ATPase subunit C compare
HSERO_RS16685 -0.9 -1.7 lactate dehydrogenase compare
HSERO_RS23945 -0.9 -1.6 cobyric acid synthase CobQ compare
HSERO_RS12560 -0.9 -2.4 antitoxin compare
HSERO_RS15045 -0.9 -2.0 membrane protein compare
HSERO_RS20365 -0.9 -1.6 metal-dependent hydrolase compare
HSERO_RS02100 -0.9 -1.0 4-oxalocrotonate decarboxylase compare
HSERO_RS04545 -0.9 -1.2 integrase compare
HSERO_RS11885 -0.8 -1.3 hypothetical protein compare
HSERO_RS03440 -0.8 -2.3 biopolymer transporter ExbD compare
HSERO_RS13315 -0.8 -1.0 ferredoxin compare
HSERO_RS21345 -0.8 -2.0 cell division inhibitor MinD compare
HSERO_RS11185 -0.8 -1.8 amino acid dehydrogenase compare
HSERO_RS08895 -0.8 -1.8 NUDIX hydrolase compare
HSERO_RS06080 -0.8 -3.7 hypothetical protein compare
HSERO_RS04435 -0.8 -1.8 oxidoreductase compare
HSERO_RS03265 -0.8 -3.0 transcription regulator protein compare
HSERO_RS16105 -0.8 -1.3 histidine kinase compare
HSERO_RS04645 -0.8 -1.9 AraC family transcriptional regulator compare
HSERO_RS09670 -0.8 -1.3 DNA repair protein RecO compare
HSERO_RS13270 -0.8 -2.3 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS15665 -0.8 -0.8 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS01995 -0.8 -1.2 peptidoglycan transglycosylase compare
HSERO_RS14270 -0.8 -1.7 hypothetical protein compare
HSERO_RS04860 -0.8 -0.7 sugar ABC transporter permease compare
HSERO_RS16420 -0.8 -2.6 phosphoesterase compare
HSERO_RS00130 -0.8 -2.1 hypothetical protein compare
HSERO_RS12110 -0.8 -2.1 sugar ABC transporter substrate-binding protein compare
HSERO_RS14275 -0.8 -1.2 nitrogen fixation protein NifX compare
HSERO_RS21425 -0.8 -2.7 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS08175 -0.8 -3.8 D-alanyl-D-alanine carboxypeptidase compare
HSERO_RS13655 -0.8 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source Sodium pyruvate across organisms