Experiment set1IT043 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS14635 +2.9 20.1 proline-specific permease conserved
RR42_RS21820 +2.4 10.7 GntR family transcriptional regulator compare
RR42_RS14640 +2.2 9.4 histidine ammonia-lyase conserved
RR42_RS11460 +2.1 9.1 pyrroloquinoline quinone biosynthesis protein PqqB conserved
RR42_RS20370 +1.9 3.7 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS11465 +1.8 6.2 pyrroloquinoline quinone biosynthesis protein PqqC compare
RR42_RS11440 +1.7 4.1 cytochrome Cbb3 compare
RR42_RS33500 +1.6 11.9 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS07455 +1.6 11.7 ABC transporter substrate-binding protein compare
RR42_RS33495 +1.6 13.9 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS22230 +1.5 1.7 hypothetical protein compare
RR42_RS12390 +1.4 4.4 transporter compare
RR42_RS07450 +1.4 5.8 ABC transporter permease compare
RR42_RS33505 +1.3 5.6 AsnC family transcriptional regulator compare
RR42_RS07330 +1.3 8.2 histidine utilization repressor compare
RR42_RS02210 +1.3 1.9 succinate dehydrogenase compare
RR42_RS17620 +1.3 4.5 phosphatidylglycerophosphatase compare
RR42_RS07155 +1.3 2.4 hypothetical protein compare
RR42_RS14645 +1.2 3.9 urocanate hydratase compare
RR42_RS10855 +1.2 1.5 diguanylate phosphodiesterase compare
RR42_RS05665 +1.2 1.6 urease accessory protein UreJ compare
RR42_RS20365 +1.2 7.9 phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
RR42_RS30765 +1.2 1.8 tRNA-Arg compare
RR42_RS30285 +1.1 3.3 amidohydrolase compare
RR42_RS05965 +1.1 2.5 malonic semialdehyde reductase compare
RR42_RS26935 +1.1 5.3 farnesyl-diphosphate farnesyltransferase compare
RR42_RS19745 +1.1 2.9 RlpA-like protein compare
RR42_RS01630 +1.1 1.8 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS16910 +1.1 1.8 histidine utilization protein HutD compare
RR42_RS34275 +1.1 1.3 virulence protein compare
RR42_RS11425 +1.0 1.7 MFS transporter compare
RR42_RS37045 +1.0 1.5 thiamine biosynthesis protein ApbE compare
RR42_RS11435 +1.0 4.2 ABC transporter permease compare
RR42_RS18990 +1.0 8.9 glutamate synthase compare
RR42_RS15380 +1.0 3.8 kynurenine formamidase compare
RR42_RS30440 +1.0 3.4 cation:proton antiporter compare
RR42_RS07440 +1.0 1.7 hypothetical protein compare
RR42_RS34280 +0.9 3.6 hypothetical protein compare
RR42_RS06880 +0.9 1.8 hypothetical protein compare
RR42_RS12925 +0.9 2.4 ATPase compare
RR42_RS07125 +0.9 2.0 hypothetical protein compare
RR42_RS00725 +0.9 2.3 hypothetical protein compare
RR42_RS07240 +0.9 1.1 hypothetical protein compare
RR42_RS17930 +0.9 4.2 RNA pyrophosphohydrolase compare
RR42_RS14880 +0.9 2.9 hypothetical protein compare
RR42_RS02675 +0.9 1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
RR42_RS02030 +0.9 1.7 membrane protein compare
RR42_RS11510 +0.9 3.5 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS32645 +0.9 1.4 2-keto-4-pentenoate hydratase compare
RR42_RS23365 +0.8 3.0 flagellar biosynthesis protein FliO compare
RR42_RS13620 +0.8 1.2 ferredoxin compare
RR42_RS23515 +0.8 5.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS07825 +0.8 1.5 D-amino acid oxidase compare
RR42_RS13830 +0.8 1.1 hypothetical protein compare
RR42_RS14405 +0.8 4.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS28720 +0.8 2.1 hypothetical protein compare
RR42_RS17730 +0.8 2.4 hypothetical protein compare
RR42_RS19885 +0.8 1.0 aminoglycoside transporter compare
RR42_RS02810 +0.8 1.6 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS16640 +0.8 1.5 LysR family transcriptional regulator compare
RR42_RS25640 +0.8 1.5 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS35715 +0.8 2.1 flagellar basal body rod modification protein FlgD compare
RR42_RS15730 +0.8 4.5 sugar transferase compare
RR42_RS32850 +0.8 1.9 universal stress protein UspA compare
RR42_RS02150 +0.8 1.9 membrane protein compare
RR42_RS03980 +0.8 1.9 Fis family transcriptional regulator compare
RR42_RS14410 +0.7 2.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS04420 +0.7 3.2 required for efflux of an amino acid polymer (from data) compare
RR42_RS06710 +0.7 1.6 hypothetical protein compare
RR42_RS14420 +0.7 4.6 branched-chain amino acid transporter permease subunit LivH compare
RR42_RS12425 +0.7 2.5 3-hydroxy-3-methylglutaryl-CoA lyase compare
RR42_RS24270 +0.7 3.4 hypothetical protein compare
RR42_RS08175 +0.7 1.0 hypothetical protein compare
RR42_RS21850 +0.7 1.6 3-oxoadipate enol-lactonase compare
RR42_RS31960 +0.7 1.2 biphenyl 2,3-dioxygenase compare
RR42_RS12255 +0.7 3.1 sulfate/thiosulfate transporter permease subunit compare
RR42_RS28515 +0.7 3.1 LysR family transcriptional regulator compare
RR42_RS03765 +0.7 2.8 formate dehydrogenase compare
RR42_RS12280 +0.7 3.1 aliphatic sulfonate ABC transporter ATP-binding protein compare
RR42_RS07780 +0.7 1.7 hypothetical protein compare
RR42_RS35900 +0.7 3.9 hypothetical protein compare
RR42_RS01510 +0.7 3.2 N-acetylglutamate synthase compare
RR42_RS30320 +0.7 1.4 hypothetical protein compare
RR42_RS03140 +0.7 3.6 molybdenum cofactor biosynthesis protein MoaC compare
RR42_RS27605 +0.7 2.0 hypothetical protein compare
RR42_RS33815 +0.7 0.8 isochorismatase compare
RR42_RS20310 +0.7 0.8 copper-binding protein compare
RR42_RS08425 +0.7 1.3 hypothetical protein compare
RR42_RS32670 +0.7 1.0 phenol hydroxylase compare
RR42_RS21365 +0.7 2.7 ABC transporter ATP-binding protein compare
RR42_RS15060 +0.7 2.1 membrane protein compare
RR42_RS00345 +0.7 1.3 LysR family transcriptional regulator compare
RR42_RS07995 +0.7 1.2 hypothetical protein compare
RR42_RS17805 +0.7 0.8 hypothetical protein compare
RR42_RS06130 +0.7 2.6 Gluconokinase (EC 2.7.1.12) (from data) compare
RR42_RS22245 +0.7 2.3 cytochrome C biogenesis protein compare
RR42_RS14885 +0.7 1.3 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS14425 +0.7 4.4 leucine ABC transporter substrate-binding protein compare
RR42_RS21755 +0.6 1.5 shikimate dehydrogenase compare
RR42_RS32765 +0.6 3.0 hypothetical protein compare
RR42_RS09830 +0.6 1.1 DNA-binding protein compare
RR42_RS14415 +0.6 3.6 leucine/isoleucine/valine transporter permease subunit compare
RR42_RS27200 +0.6 2.7 LacI family transcriptional regulator compare
RR42_RS26130 +0.6 1.6 C4-dicarboxylate ABC transporter compare
RR42_RS33850 +0.6 1.7 hypothetical protein compare
RR42_RS02165 +0.6 1.9 LysR family transcriptional regulator compare
RR42_RS03755 +0.6 3.8 formate dehydrogenase compare
RR42_RS07665 +0.6 1.4 hypothetical protein compare
RR42_RS24790 +0.6 0.9 LysR family transcriptional regulator compare
RR42_RS27985 +0.6 3.1 membrane protein compare
RR42_RS23690 +0.6 1.9 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS16370 +0.6 1.8 glutamine ABC transporter ATP-binding protein compare
RR42_RS01605 +0.6 1.6 hydrolase compare
RR42_RS35220 +0.6 0.9 peptide ABC transporter ATP-binding protein compare
RR42_RS13255 +0.6 2.7 hydroxymethylglutaryl-CoA lyase compare
RR42_RS35805 +0.6 2.2 chemotaxis protein CheA compare
RR42_RS29545 +0.6 1.7 mannosyltransferase compare
RR42_RS01435 +0.6 1.9 short-chain dehydrogenase compare
RR42_RS34210 +0.6 1.8 hypothetical protein compare
RR42_RS11475 +0.6 2.4 pyrroloquinoline quinone biosynthesis protein PqqE compare
RR42_RS12275 +0.6 2.1 transporter compare
RR42_RS01755 +0.6 2.1 nitrogen regulatory protein P-II 1 compare
RR42_RS27090 +0.6 1.2 chemotaxis protein CheV compare
RR42_RS25660 +0.6 2.3 cytochrome C biogenesis protein compare
RR42_RS00765 +0.6 2.8 sulfurtransferase compare
RR42_RS06000 +0.6 0.9 antibiotic biosynthesis monooxygenase compare
RR42_RS09290 +0.6 1.0 hypothetical protein compare
RR42_RS25530 +0.6 3.1 TetR family transcriptional regulator compare
RR42_RS05230 +0.6 2.2 LysR family transcriptional regulator compare
RR42_RS34895 +0.6 2.5 hypothetical protein compare
RR42_RS29980 +0.6 2.5 transposase compare
RR42_RS11530 +0.6 2.2 LuxR family transcriptional regulator compare
RR42_RS05895 +0.6 0.9 rhombosortase compare
RR42_RS13905 +0.6 1.8 fumarate hydratase compare
RR42_RS16375 +0.6 2.6 short-chain dehydrogenase compare
RR42_RS04410 +0.6 4.1 cyanophycin synthetase compare
RR42_RS28630 +0.6 2.1 ABC transporter substrate-binding protein compare
RR42_RS26115 +0.6 2.1 dihydrolipoamide dehydrogenase compare
RR42_RS22635 +0.6 2.4 membrane protein compare
RR42_RS10240 +0.6 0.9 hypothetical protein compare
RR42_RS03920 +0.5 1.2 rubredoxin compare
RR42_RS03280 +0.5 1.5 LysR family transcriptional regulator compare
RR42_RS07760 +0.5 2.5 thiamine biosynthesis protein ApbE compare
RR42_RS33430 +0.5 1.5 LysR family transcriptional regulator compare
RR42_RS21055 +0.5 0.9 excisionase compare
RR42_RS31910 +0.5 0.8 acyl-CoA dehydrogenase compare
RR42_RS06250 +0.5 1.3 dihydrodipicolinate synthase compare
RR42_RS35365 +0.5 2.0 RND transporter compare
RR42_RS28270 +0.5 1.3 TetR family transcriptional regulator compare
RR42_RS27920 +0.5 3.1 hypothetical protein compare
RR42_RS06675 +0.5 1.9 hypothetical protein compare
RR42_RS28750 +0.5 2.3 ABC transporter substrate-binding protein compare
RR42_RS07425 +0.5 2.6 IclR family transcriptional regulator compare
RR42_RS18985 +0.5 2.8 glutamate synthase compare
RR42_RS16925 +0.5 2.5 histidine utilization repressor compare
RR42_RS03380 +0.5 2.0 glucose-6-phosphate isomerase compare
RR42_RS25030 +0.5 1.2 ABC transporter permease compare
RR42_RS26330 +0.5 2.3 hypothetical protein compare
RR42_RS06510 +0.5 1.1 hypothetical protein compare
RR42_RS01610 +0.5 2.1 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS09580 +0.5 0.7 hypothetical protein compare
RR42_RS04765 +0.5 1.3 3-oxoacyl-ACP reductase compare
RR42_RS28490 +0.5 1.8 hypothetical protein compare
RR42_RS05840 +0.5 1.1 GCN5 family acetyltransferase compare
RR42_RS23120 +0.5 1.8 hypothetical protein compare
RR42_RS14070 +0.5 3.6 sugar dehydratase compare
RR42_RS12680 +0.5 2.2 hypothetical protein compare
RR42_RS23995 +0.5 1.2 hypothetical protein compare
RR42_RS08300 +0.5 2.7 hypothetical protein compare
RR42_RS11900 +0.5 1.4 peptide deformylase compare
RR42_RS24980 +0.5 1.0 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS06935 +0.5 2.1 hypothetical protein compare
RR42_RS09245 +0.5 0.9 hypothetical protein compare
RR42_RS32805 +0.5 1.2 damage-inducible protein compare
RR42_RS18790 +0.5 2.3 hypothetical protein compare
RR42_RS16620 +0.5 0.9 hypothetical protein compare
RR42_RS17610 +0.5 4.1 malate dehydrogenase compare
RR42_RS34940 +0.5 1.3 bb3-type cytochrome oxidase subunit IV compare
RR42_RS28610 +0.5 1.7 acyl-CoA dehydrogenase compare
RR42_RS15770 +0.5 2.3 hypothetical protein compare
RR42_RS31690 +0.5 2.2 4-oxalocrotonate tautomerase compare
RR42_RS14945 +0.5 1.6 hypothetical protein compare
RR42_RS03865 +0.5 1.7 hydroxyacid dehydrogenase compare
RR42_RS25765 +0.5 1.8 hypothetical protein compare
RR42_RS03825 +0.5 1.4 ModE family transcriptional regulator compare
RR42_RS23595 +0.5 1.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS24180 +0.5 1.4 3-isopropylmalate dehydratase compare
RR42_RS06335 +0.5 0.8 cyclophilin compare
RR42_RS04405 +0.5 3.1 cyanophycin synthetase compare
RR42_RS01990 +0.5 2.5 methyltransferase compare
RR42_RS10920 +0.5 0.8 hypothetical protein compare
RR42_RS07360 +0.5 1.1 ATPase compare
RR42_RS05875 +0.5 3.0 protease TldD compare
RR42_RS15185 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS05465 +0.5 3.5 2-isopropylmalate synthase compare
RR42_RS25380 +0.5 1.3 acetyl-CoA acetyltransferase compare
RR42_RS17335 +0.5 1.5 DeoR family transcriptional regulator compare
RR42_RS32875 +0.5 1.6 hypothetical protein compare
RR42_RS29945 +0.5 1.4 enoyl-CoA hydratase compare
RR42_RS04045 +0.5 1.9 proline hydroxylase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Cupriavidus basilensis FW507-4G11

For carbon source L-Histidine across organisms