Experiment set1IT043 for Burkholderia phytofirmans PsJN

Compare to:

LB with Benzethonium chloride 0.0016 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -6.0 -4.7 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14855 -5.8 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06175 -5.7 -6.7 LPS biosynthesis compare
BPHYT_RS17760 -5.2 -9.6 ABC transporter permease compare
BPHYT_RS01485 -5.1 -1.9 histidine kinase compare
BPHYT_RS12615 -4.5 -2.3 dihydrodipicolinate synthase compare
BPHYT_RS06190 -4.3 -3.7 heptosyltransferase compare
BPHYT_RS08850 -4.3 -3.6 transcriptional regulator compare
BPHYT_RS16710 -4.3 -2.2 LysR family transcriptional regulator compare
BPHYT_RS17745 -4.3 -7.4 toluene tolerance family protein compare
BPHYT_RS16175 -4.0 -3.8 hemolysin D compare
BPHYT_RS02860 -3.6 -1.9 membrane protein compare
BPHYT_RS02965 -3.6 -4.9 membrane protein compare
BPHYT_RS14060 -3.5 -3.5 peptidase M23 compare
BPHYT_RS02865 -3.4 -4.4 hypothetical protein compare
BPHYT_RS17765 -3.3 -4.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS22510 -3.2 -3.7 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BPHYT_RS23840 -3.2 -4.1 methyltransferase compare
BPHYT_RS07145 -3.1 -2.7 DNA-binding protein compare
BPHYT_RS04290 -2.9 -2.9 glycosyl transferase family 2 compare
BPHYT_RS17755 -2.9 -4.5 ABC transporter substrate-binding protein compare
BPHYT_RS04370 -2.9 -3.1 glycosyl transferase compare
BPHYT_RS08235 -2.7 -2.0 nucleoprotein, Hfg, host factor I compare
BPHYT_RS04335 -2.7 -2.2 membrane protein compare
BPHYT_RS04340 -2.6 -4.2 hypothetical protein compare
BPHYT_RS22515 -2.5 -10.5 multidrug efflux RND transporter permease subunit compare
BPHYT_RS04285 -2.4 -3.4 rhamnosyltransferase compare
BPHYT_RS04950 -2.3 -16.1 hypothetical protein compare
BPHYT_RS15615 -2.2 -3.5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS03725 -2.2 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS22500 -2.2 -4.9 transcriptional regulator compare
BPHYT_RS13245 -2.1 -4.3 hypothetical protein compare
BPHYT_RS22520 -2.1 -5.7 RND transporter compare
BPHYT_RS04945 -2.0 -16.6 membrane protein compare
BPHYT_RS11400 -2.0 -2.5 hypothetical protein compare
BPHYT_RS01630 -2.0 -3.9 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS08960 -2.0 -1.6 threonine synthase compare
BPHYT_RS14845 -1.9 -3.8 cysteine synthase compare
BPHYT_RS23940 -1.8 -2.0 GntR family transcriptional regulator compare
BPHYT_RS21905 -1.8 -1.5 IclR family transcriptional regulator compare
BPHYT_RS19680 -1.8 -11.9 glutamate--cysteine ligase compare
BPHYT_RS04455 -1.8 -1.7 glycosyl transferase compare
BPHYT_RS27175 -1.8 -1.4 DNA-binding protein compare
BPHYT_RS15595 -1.7 -8.5 ABC transporter compare
BPHYT_RS04385 -1.7 -3.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS09315 -1.7 -1.3 chemotaxis protein CheY compare
BPHYT_RS14380 -1.7 -5.3 elongation factor 4 compare
BPHYT_RS17545 -1.6 -4.7 cold-shock protein compare
BPHYT_RS27295 -1.6 -1.9 hypothetical protein compare
BPHYT_RS19350 -1.6 -7.0 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS17100 -1.6 -7.0 RNA pyrophosphohydrolase compare
BPHYT_RS11310 -1.6 -1.8 LysR family transcriptional regulator compare
BPHYT_RS06155 -1.6 -5.5 DEAD/DEAH box helicase compare
BPHYT_RS17640 -1.5 -4.2 2-alkenal reductase compare
BPHYT_RS19355 -1.5 -12.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS08815 -1.5 -7.5 L-asparaginase (EC 3.5.1.1) (from data) compare
BPHYT_RS19305 -1.5 -5.1 ATP-dependent DNA helicase Rep compare
BPHYT_RS15605 -1.5 -7.9 ABC transporter permease compare
BPHYT_RS15075 -1.4 -1.2 dihydrokaempferol 4-reductase compare
BPHYT_RS15600 -1.4 -7.6 ABC transporter ATP-binding protein compare
BPHYT_RS23140 -1.4 -3.6 putrescine/spermidine ABC transporter permease compare
BPHYT_RS14920 -1.4 -5.6 hypothetical protein compare
BPHYT_RS02285 -1.4 -6.9 cell division protein compare
BPHYT_RS03755 -1.4 -2.3 pilus assembly protein PilE compare
BPHYT_RS04940 -1.4 -6.0 hypothetical protein compare
BPHYT_RS02560 -1.4 -6.4 glutathione synthetase compare
BPHYT_RS09385 -1.3 -1.3 FAD-dependent oxidoreductase compare
BPHYT_RS12535 -1.3 -1.2 membrane protein compare
BPHYT_RS26490 -1.3 -1.5 hypothetical protein compare
BPHYT_RS21350 -1.3 -3.1 ADP-glucose pyrophosphorylase compare
BPHYT_RS01455 -1.3 -1.2 peptide deformylase compare
BPHYT_RS14400 -1.3 -2.0 anti-sigma factor compare
BPHYT_RS16445 -1.3 -2.4 RNA helicase compare
BPHYT_RS25970 -1.3 -1.2 urea amidolyase compare
BPHYT_RS19340 -1.2 -6.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS18610 -1.2 -4.0 lytic transglycosylase compare
BPHYT_RS06530 -1.2 -1.8 membrane protein compare
BPHYT_RS34810 -1.2 -5.5 RND transporter compare
BPHYT_RS36090 -1.2 -2.1 hypothetical protein compare
BPHYT_RS14740 -1.2 -6.0 threonine-phosphate decarboxylase compare
BPHYT_RS19565 -1.2 -7.9 gamma-glutamyl:cysteine ligase compare
BPHYT_RS17890 -1.2 -1.8 shikimate kinase compare
BPHYT_RS14395 -1.2 -4.7 sugar dehydratase compare
BPHYT_RS33150 -1.2 -1.2 beta-lactamase compare
BPHYT_RS33990 -1.2 -1.1 ATPase compare
BPHYT_RS36525 -1.2 -3.1 hypothetical protein compare
BPHYT_RS16270 -1.2 -3.8 phosphoglycerate kinase compare
BPHYT_RS02590 -1.1 -6.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15590 -1.1 -4.0 amino acid ABC transporter ATPase compare
BPHYT_RS23435 -1.1 -1.8 MFS transporter compare
BPHYT_RS14095 -1.1 -1.3 phosphohistidine phosphatase compare
BPHYT_RS09515 -1.1 -3.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS22505 -1.1 -2.1 alpha/beta hydrolase compare
BPHYT_RS20150 -1.1 -2.0 glycosyl transferase family 1 compare
BPHYT_RS09650 -1.1 -1.2 hypothetical protein compare
BPHYT_RS19570 -1.1 -8.8 sodium/hydrogen exchanger compare
BPHYT_RS17240 -1.1 -1.2 cell division protein FtsW compare
BPHYT_RS24975 -1.1 -1.5 RNA polymerase sigma24 factor compare
BPHYT_RS18710 -1.0 -3.0 membrane protein compare
BPHYT_RS30365 -1.0 -1.0 beta-lactamase compare
BPHYT_RS21335 -1.0 -1.9 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS16250 -1.0 -1.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS36300 -1.0 -5.7 hypothetical protein compare
BPHYT_RS36385 -1.0 -0.9 TetR family transcriptional regulator compare
BPHYT_RS16215 -1.0 -3.4 sensor histidine kinase compare
BPHYT_RS36275 -1.0 -1.5 hypothetical protein compare
BPHYT_RS19325 -1.0 -1.9 glycine cleavage system H protein compare
BPHYT_RS17750 -1.0 -6.3 VacJ family lipoprotein compare
BPHYT_RS16840 -1.0 -2.5 transketolase compare
BPHYT_RS29745 -1.0 -3.0 phosphonopyruvate decarboxylase compare
BPHYT_RS16255 -1.0 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS21860 -0.9 -1.3 hypothetical protein compare
BPHYT_RS04500 -0.9 -1.9 urease accessory protein UreF compare
BPHYT_RS25575 -0.9 -1.1 alpha/beta hydrolase compare
BPHYT_RS05705 -0.9 -1.2 hypothetical protein compare
BPHYT_RS10065 -0.9 -1.2 cytochrome C oxidase subunit I compare
BPHYT_RS06610 -0.9 -2.0 triosephosphate isomerase compare
BPHYT_RS26570 -0.9 -1.0 5'-nucleotidase compare
BPHYT_RS30285 -0.9 -1.6 succinate-semialdehyde dehydrogenase compare
BPHYT_RS11705 -0.9 -1.3 hypothetical protein compare
BPHYT_RS34815 -0.9 -1.6 ABC transporter compare
BPHYT_RS13735 -0.9 -3.0 membrane protein compare
BPHYT_RS18260 -0.9 -5.5 phenylacetic acid degradation protein compare
BPHYT_RS03480 -0.9 -2.8 ferritin compare
BPHYT_RS34260 -0.9 -2.6 hypothetical protein compare
BPHYT_RS13610 -0.9 -2.8 MerR family transcriptional regulator compare
BPHYT_RS36400 -0.9 -0.9 hypothetical protein compare
BPHYT_RS10400 -0.9 -1.0 taurine ABC transporter permease compare
BPHYT_RS34185 -0.9 -2.9 cold-shock protein compare
BPHYT_RS33125 -0.9 -1.5 hypothetical protein compare
BPHYT_RS03280 -0.9 -0.7 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS15015 -0.9 -1.2 ArsR family transcriptional regulator compare
BPHYT_RS12510 -0.9 -2.2 RNA-binding protein compare
BPHYT_RS27210 -0.8 -2.2 alcohol dehydrogenase compare
BPHYT_RS05330 -0.8 -1.8 phosphohydrolase compare
BPHYT_RS01425 -0.8 -2.3 3-phosphoglycerate dehydrogenase compare
BPHYT_RS32435 -0.8 -1.4 formate dehydrogenase-N subunit beta compare
BPHYT_RS01585 -0.8 -4.3 major facilitator superfamily protein compare
BPHYT_RS28470 -0.8 -1.4 hypothetical protein compare
BPHYT_RS16245 -0.8 -4.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS02415 -0.8 -4.0 cytochrome C550 compare
BPHYT_RS06900 -0.8 -3.3 aspartate aminotransferase compare
BPHYT_RS14660 -0.8 -2.4 hypothetical protein compare
BPHYT_RS07570 -0.8 -1.1 hypothetical protein compare
BPHYT_RS06195 -0.8 -2.1 membrane protein compare
BPHYT_RS29750 -0.8 -2.6 phosphoenolpyruvate phosphomutase compare
BPHYT_RS15810 -0.8 -2.8 citrate synthase compare
BPHYT_RS24565 -0.8 -1.7 membrane protein compare
BPHYT_RS17520 -0.8 -3.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS15620 -0.8 -3.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20665 -0.8 -0.8 LysR family transcriptional regulator compare
BPHYT_RS01115 -0.8 -1.7 hypothetical protein compare
BPHYT_RS12840 -0.8 -3.1 pyruvate dehydrogenase compare
BPHYT_RS23205 -0.8 -2.2 alkylhydroperoxidase compare
BPHYT_RS16645 -0.8 -5.0 anhydro-N-acetylmuramic acid kinase compare
BPHYT_RS28705 -0.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS16135 -0.8 -3.5 ABC transporter ATP-binding protein compare
BPHYT_RS28910 -0.8 -1.8 diguanylate phosphodiesterase compare
BPHYT_RS07130 -0.8 -1.2 biopolymer transporter ExbD compare
BPHYT_RS17865 -0.8 -3.1 membrane protein compare
BPHYT_RS26515 -0.8 -1.9 HAD family hydrolase compare
BPHYT_RS19115 -0.7 -1.4 acyl carrier protein compare
BPHYT_RS05290 -0.7 -0.8 hypothetical protein compare
BPHYT_RS34675 -0.7 -3.7 DNA-binding protein compare
BPHYT_RS09105 -0.7 -2.8 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS28100 -0.7 -1.4 hypothetical protein compare
BPHYT_RS03570 -0.7 -2.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS08680 -0.7 -1.8 hypothetical protein compare
BPHYT_RS29500 -0.7 -1.8 hypothetical protein compare
BPHYT_RS14735 -0.7 -0.9 hypothetical protein compare
BPHYT_RS14185 -0.7 -1.8 transcription elongation factor GreA compare
BPHYT_RS33590 -0.7 -4.9 Rieske (2Fe-2S) protein compare
BPHYT_RS18265 -0.7 -2.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS29740 -0.7 -3.0 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS24585 -0.7 -1.2 NUDIX hydrolase compare
BPHYT_RS05215 -0.7 -3.5 DNA-binding protein compare
BPHYT_RS05285 -0.7 -1.1 hypothetical protein compare
BPHYT_RS27395 -0.7 -1.5 N-acetyltransferase GCN5 compare
BPHYT_RS04140 -0.7 -1.5 polysaccharide biosynthesis protein compare
BPHYT_RS07540 -0.7 -0.8 hypothetical protein compare
BPHYT_RS17860 -0.7 -2.4 transposase compare
BPHYT_RS26380 -0.7 -1.7 cobalamin biosynthesis protein CobT compare
BPHYT_RS20905 -0.7 -1.6 hypothetical protein compare
BPHYT_RS07220 -0.7 -0.9 GCN5 family acetyltransferase compare
BPHYT_RS28245 -0.7 -1.2 MFS transporter compare
BPHYT_RS34805 -0.7 -3.9 ABC transporter compare
BPHYT_RS02595 -0.7 -0.5 sulfurtransferase compare
BPHYT_RS27950 -0.7 -1.7 dihydroxyacetone kinase compare
BPHYT_RS08305 -0.7 -2.1 membrane protein compare
BPHYT_RS13900 -0.7 -1.8 ATPase compare
BPHYT_RS28830 -0.7 -0.9 LysR family transcriptional regulator compare
BPHYT_RS35675 -0.7 -1.6 short-chain dehydrogenase compare
BPHYT_RS14015 -0.7 -2.0 hypothetical protein compare
BPHYT_RS23740 -0.7 -3.0 AraC family transcriptional regulator compare
BPHYT_RS18270 -0.7 -4.3 phenylacetic acid degradation protein compare
BPHYT_RS08825 -0.7 -1.1 tartronate semialdehyde reductase compare
BPHYT_RS23455 -0.7 -0.8 phosphorylase compare
BPHYT_RS00055 -0.7 -2.0 hypothetical protein compare
BPHYT_RS30990 -0.7 -1.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS33175 -0.7 -1.3 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Benzethonium chloride in Burkholderia phytofirmans PsJN

For stress Benzethonium chloride across organisms