Experiment set1IT043 for Burkholderia phytofirmans PsJN
LB with Benzethonium chloride 0.0016 mM
Group: stressMedia: LB + Benzethonium chloride (0.0016 mM)
Culturing: BFirm_ML3, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 4.6 generations
By: Mark on 6/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: BFirm_SP4 A1
Specific Phenotypes
For 8 genes in this experiment
For stress Benzethonium chloride in Burkholderia phytofirmans PsJN
For stress Benzethonium chloride across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Arginine and proline metabolism
- Glutamate metabolism
- Alanine and aspartate metabolism
- Cyanoamino acid metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine degradation I | 1 | 1 | 1 |
| L-proline degradation I | 3 | 3 | 2 |
| proline to cytochrome bo oxidase electron transfer | 2 | 2 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| L-arginine degradation I (arginase pathway) | 3 | 1 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| ethene biosynthesis II (microbes) | 4 | 1 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 2 | 1 |
| (5R)-carbapenem carboxylate biosynthesis | 6 | 1 | 1 |
| L-Nδ-acetylornithine biosynthesis | 7 | 4 | 1 |
| L-citrulline biosynthesis | 8 | 6 | 1 |
| superpathway of L-citrulline metabolism | 12 | 8 | 1 |