Experiment set1IT042 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium nitrite 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.1 -5.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5320 -5.1 -12.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2274 -4.2 -8.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5319 -3.9 -9.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5318 -3.6 -19.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_5321 -3.4 -12.3 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5317 -3.0 -14.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5242 -2.7 -3.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4369 -2.6 -4.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3908 -2.6 -9.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2218 -2.5 -6.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3461 -2.4 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3252 -2.3 -8.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2217 -2.3 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1056 -2.2 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4353 -2.2 -8.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5739 -2.1 -2.4 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2574 -1.9 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_2285 -1.7 -1.9 FIG00954079: hypothetical protein compare
Pf6N2E2_2181 -1.7 -2.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4077 -1.6 -3.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2180 -1.6 -3.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3611 -1.6 -1.6 HflC protein compare
Pf6N2E2_4451 -1.5 -5.5 FIG139438: lipoprotein B compare
Pf6N2E2_3612 -1.5 -3.2 HflK protein compare
Pf6N2E2_5425 -1.5 -1.6 hypothetical protein compare
Pf6N2E2_4072 -1.5 -5.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4162 -1.5 -3.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4075 -1.5 -5.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5527 -1.4 -1.5 Cold shock protein CspC compare
Pf6N2E2_3841 -1.4 -4.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3839 -1.4 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -1.4 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2316 -1.4 -9.2 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_5339 -1.4 -5.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5430 -1.3 -8.5 Transglycosylase, Slt family compare
Pf6N2E2_5338 -1.3 -7.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2320 -1.3 -3.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3351 -1.3 -5.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4803 -1.3 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_288 -1.3 -2.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4352 -1.3 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3607 -1.3 -5.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3842 -1.3 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2318 -1.2 -5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2317 -1.2 -5.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4159 -1.2 -4.1 Cytochrome c4 compare
Pf6N2E2_6140 -1.2 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3303 -1.2 -3.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2309 -1.2 -3.9 hypothetical protein compare
Pf6N2E2_2447 -1.2 -4.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5841 -1.2 -1.6 GlcG protein compare
Pf6N2E2_1917 -1.2 -3.6 hypothetical protein compare
Pf6N2E2_3179 -1.1 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_3260 -1.1 -4.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3261 -1.1 -3.9 hypothetical protein compare
Pf6N2E2_4351 -1.1 -7.1 Predicted signal transduction protein compare
Pf6N2E2_2201 -1.1 -3.2 Transmembrane regulator protein PrtR compare
Pf6N2E2_64 -1.1 -2.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3667 -1.0 -0.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3095 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_3541 -1.0 -2.9 Putative multicopper oxidases compare
Pf6N2E2_3770 -1.0 -2.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4416 -1.0 -2.2 Tyrosine recombinase XerC compare
Pf6N2E2_2552 -1.0 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5536 -1.0 -1.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5150 -1.0 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_958 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_5316 -1.0 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4204 -1.0 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3460 -1.0 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2753 -0.9 -1.6 HtrA protease/chaperone protein compare
Pf6N2E2_434 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_4372 -0.9 -4.0 FIG00460773: hypothetical protein compare
Pf6N2E2_3255 -0.9 -2.7 YrbA protein compare
Pf6N2E2_1603 -0.9 -3.5 hypothetical protein compare
Pf6N2E2_5337 -0.9 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_623 -0.9 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_2586 -0.9 -1.6 Hpt domain protein compare
Pf6N2E2_3762 -0.9 -4.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_5990 -0.9 -2.4 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_1797 -0.9 -2.1 Transcriptional regulator compare
Pf6N2E2_5111 -0.9 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3253 -0.9 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4464 -0.9 -2.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3940 -0.9 -6.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4187 -0.9 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5520 -0.9 -4.4 Sensory box histidine kinase compare
Pf6N2E2_2822 -0.9 -4.8 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2340 -0.8 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_4197 -0.8 -5.1 DNA recombination and repair protein RecF compare
Pf6N2E2_2707 -0.8 -3.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3257 -0.8 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_622 -0.8 -3.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3696 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_241 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_4454 -0.8 -3.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2282 -0.8 -3.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_945 -0.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_601 -0.8 -3.6 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_5001 -0.8 -1.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5156 -0.8 -1.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2527 -0.8 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1315 -0.8 -1.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_579 -0.8 -1.7 FIG00962753: hypothetical protein compare
Pf6N2E2_2306 -0.8 -3.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3346 -0.8 -4.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3941 -0.8 -2.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1545 -0.8 -3.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2111 -0.8 -2.3 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5103 -0.8 -1.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4074 -0.8 -6.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4889 -0.7 -3.5 Putative transport protein compare
Pf6N2E2_1667 -0.7 -2.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_237 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_2500 -0.7 -3.3 Putative membrane protein compare
Pf6N2E2_3783 -0.7 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5178 -0.7 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5252 -0.7 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_4071 -0.7 -2.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1636 -0.7 -4.4 Ferrichrome-iron receptor compare
Pf6N2E2_5428 -0.7 -4.0 DNA recombination and repair protein RecO compare
Pf6N2E2_59 -0.7 -3.1 16 kDa heat shock protein A compare
Pf6N2E2_5030 -0.7 -3.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_4139 -0.7 -4.8 Integral membrane protein TerC compare
Pf6N2E2_5155 -0.7 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3638 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_3062 -0.7 -3.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3840 -0.7 -2.8 FIG00956267: hypothetical protein compare
Pf6N2E2_2325 -0.7 -3.2 Recombination protein RecR compare
Pf6N2E2_2640 -0.7 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2549 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2219 -0.7 -1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_1437 -0.7 -2.3 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_3533 -0.7 -3.0 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_384 -0.7 -2.4 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2912 -0.7 -0.6 FIG00954094: hypothetical protein compare
Pf6N2E2_895 -0.7 -2.7 Transcriptional regulator, HxlR family compare
Pf6N2E2_5057 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_3258 -0.6 -2.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4601 -0.6 -1.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2310 -0.6 -4.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_282 -0.6 -1.2 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3569 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_3624 -0.6 -3.7 Flagellar motor rotation protein MotB compare
Pf6N2E2_1654 -0.6 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5219 -0.6 -4.2 FIG140336: TPR domain protein compare
Pf6N2E2_358 -0.6 -2.6 Haloacid dehalogenase, type II compare
Pf6N2E2_1150 -0.6 -2.8 CBS-domain-containing membrane protein compare
Pf6N2E2_3834 -0.6 -4.0 Lipoprotein NlpD compare
Pf6N2E2_2281 -0.6 -1.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5508 -0.6 -1.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4570 -0.6 -1.4 Cation/multidrug efflux pump compare
Pf6N2E2_445 -0.6 -2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1652 -0.6 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4612 -0.6 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2922 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_2313 -0.6 -2.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3656 -0.6 -3.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3516 -0.6 -1.5 Probable transmembrane protein compare
Pf6N2E2_2825 -0.6 -2.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3498 -0.6 -1.7 FIG00953349: hypothetical protein compare
Pf6N2E2_302 -0.6 -2.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3279 -0.6 -3.0 FIG138315: Putative alpha helix protein compare
Pf6N2E2_5013 -0.6 -2.4 Putative membrane protein compare
Pf6N2E2_3328 -0.6 -1.0 transcriptional regulator compare
Pf6N2E2_290 -0.6 -1.8 Cold shock protein CspD compare
Pf6N2E2_1246 -0.6 -1.6 FIG00961372: hypothetical protein compare
Pf6N2E2_344 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_5671 -0.6 -1.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1319 -0.6 -2.0 FIG074102: hypothetical protein compare
Pf6N2E2_778 -0.6 -2.6 Probable lipoprotein signal peptide compare
Pf6N2E2_1211 -0.6 -1.2 Lactoylglutathione lyase compare
Pf6N2E2_3786 -0.6 -1.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_2940 -0.6 -2.3 OmpA family protein compare
Pf6N2E2_3698 -0.6 -2.5 Nicotinamidase family protein YcaC compare
Pf6N2E2_4680 -0.6 -2.2 HTH-type transcriptional regulator BetI compare
Pf6N2E2_3828 -0.6 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_1932 -0.6 -2.7 Transcriptional regulator, IclR family compare
Pf6N2E2_438 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_3060 -0.6 -1.3 Outer membrane protein H precursor compare
Pf6N2E2_2417 -0.6 -2.1 Sensor histidine kinase compare
Pf6N2E2_5830 -0.6 -1.8 FIG00960829: hypothetical protein compare
Pf6N2E2_5331 -0.6 -2.8 ATPase, AFG1 family compare
Pf6N2E2_3542 -0.6 -4.4 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_5668 -0.6 -1.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_525 -0.6 -2.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2121 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_4638 -0.6 -1.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1085 -0.6 -1.1 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_639 -0.5 -1.7 FIG01285020: hypothetical protein compare
Pf6N2E2_2156 -0.5 -1.5 Putative polyketide synthase (Fragment) compare
Pf6N2E2_6057 -0.5 -1.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4733 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_1153 -0.5 -2.0 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_1754 -0.5 -1.9 FIG00731982: hypothetical protein compare
Pf6N2E2_1959 -0.5 -1.6 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1303 -0.5 -1.8 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_490 -0.5 -1.8 PhaK-like protein compare
Pf6N2E2_621 -0.5 -2.8 TPR domain protein in aerotolerance operon compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium nitrite across organisms