Experiment set1IT042 for Pseudomonas fluorescens FW300-N2C3
LB with Paraquat dichloride 0.0625 mg/ml
Group: stressMedia: LB + Paraquat dichloride (0.0625 mg/ml)
Culturing: pseudo5_N2-C3_1_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 4/28/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 893 D5,D6
Specific Phenotypes
For 7 genes in this experiment
For stress Paraquat dichloride in Pseudomonas fluorescens FW300-N2C3
For stress Paraquat dichloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Lysine degradation | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
| Polyamine Metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Alanine and aspartate metabolism
- Lysine degradation
- beta-Alanine metabolism
- Propanoate metabolism
- Butanoate metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-aminobutanoate degradation III | 2 | 2 | 1 |
| 4-aminobutanoate degradation II | 2 | 2 | 1 |
| 4-aminobutanoate degradation I | 2 | 1 | 1 |
| superpathway of 4-aminobutanoate degradation | 3 | 2 | 1 |
| GABA shunt II | 4 | 2 | 1 |
| GABA shunt I | 4 | 1 | 1 |
| L-lysine degradation IV | 5 | 5 | 1 |
| L-lysine degradation X | 6 | 6 | 1 |
| L-lysine degradation III | 6 | 2 | 1 |
| L-lysine degradation I | 7 | 5 | 1 |
| 4-aminobutanoate degradation V | 7 | 2 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 10 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 12 | 1 |
| nicotine degradation I (pyridine pathway) | 17 | 7 | 1 |
| superpathway of L-lysine degradation | 43 | 19 | 1 |