Experiment set1IT042 for Sinorhizobium meliloti 1021

Compare to:

LB with Paraquat dichloride 0.05 mg/ml

200 most important genes:

  gene name fitness t score description  
SMc02149 -4.6 -2.2 hypothetical protein compare
SMc02833 -4.0 -3.1 penicillin-insensitive murein endopeptidase compare
SMc00334 -3.3 -2.3 cytidylate kinase compare
SMc01880 -3.1 -4.7 pantoate--beta-alanine ligase compare
SMc00492 -3.1 -1.5 hypothetical protein compare
SMc00619 -2.9 -2.6 hypothetical protein compare
SMc00963 -2.9 -5.6 hypothetical protein compare
SMc00053 -2.7 -1.3 monovalent cation/H+ antiporter subunit C compare
SMc00914 -2.5 -7.4 oxidoreductase compare
SMc02435 -2.4 -3.3 methyltransferase compare
SMc00580 -2.4 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02909 -2.3 -2.6 transglycosylase transmembrane protein compare
SMc01881 -2.3 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02850 -2.3 -4.3 DNA polymerase I compare
SMc02142 -2.3 -7.0 phosphate transporter ATP-binding protein compare
SMc02144 -2.3 -6.3 phosphate ABC transporter permease compare
SMc02234 -2.2 -3.4 hypothetical protein compare
SMc01183 -2.1 -2.0 LexA repressor compare
SMa1095 -2.1 -1.3 hypothetical protein compare
SMc01217 -2.1 -10.3 transport transmembrane protein conserved
SMc02147 -2.1 -7.7 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00876 -2.0 -6.8 ATP-binding MRP protein compare
SMc02753 -2.0 -1.8 PTS system transporter subunit IIA compare
SMc00650 -2.0 -1.9 hypothetical protein compare
SMc00067 -1.9 -9.1 outer-membranne lipoprotein compare
SMc01845 -1.9 -2.3 transglycosylase transmembrane protein compare
SMc01147 -1.9 -4.2 coproporphyrinogen III oxidase compare
SMc03763 -1.8 -2.7 cytosine-specific methyltransferase compare
SMc02115 -1.8 -1.1 hypothetical protein compare
SMc02077 -1.8 -2.7 exodeoxyribonuclease III protein compare
SMa0144 -1.8 -1.2 hypothetical protein compare
SMc00088 -1.8 -1.6 hypothetical protein compare
SMc01438 -1.8 -5.1 protease precursor signal peptide protein compare
SMc02145 -1.7 -1.0 signal peptide protein compare
SMc02143 -1.7 -2.2 phosphate ABC transporter permease compare
SMc01187 -1.6 -2.4 rare lipoprotein A compare
SMc00073 -1.6 -2.5 hypothetical protein compare
SMa0789 -1.6 -3.3 GntR family transcriptional regulator compare
SM_b20758 -1.6 -2.7 ArsR family transcriptional regulator compare
SMc02867 -1.5 -3.8 multidrug-efflux system transmembrane protein compare
SMc02484 -1.5 -4.4 amino acid efflux transmembrane protein compare
SMc02102 -1.5 -3.8 hypothetical protein compare
SMc01342 -1.5 -4.7 hypothetical protein compare
SMc00579 -1.5 -3.9 dimethyladenosine transferase compare
SMc00987 -1.5 -3.3 hypothetical protein compare
SMc00712 -1.4 -1.9 hypothetical protein compare
SMc02071 -1.4 -4.1 hydrolase glycosidase compare
SMc04296 -1.4 -1.1 cell division protein FtsZ compare
SMc00928 -1.4 -1.3 signal peptide protein compare
SM_b20953 -1.4 -1.1 hypothetical protein compare
SM_b20105 -1.4 -1.8 transcriptional regulator compare
SMc02868 -1.4 -4.3 multidrug efflux system protein compare
SMc02894 -1.3 -2.4 hypothetical protein compare
SMc01850 -1.3 -2.7 hypothetical protein compare
SMc02141 -1.3 -2.1 phosphate transporter PhoU compare
SMc00726 -1.3 -0.9 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03182 -1.2 -4.1 pH adaptation potassium efflux system E transmembrane protein compare
SM_b20452 -1.2 -2.6 hypothetical protein compare
SMc02140 -1.2 -1.4 phosphate regulon transcriptional regulatory protein compare
SM_b20701 -1.2 -1.0 hypothetical protein compare
SMc00970 -1.2 -1.4 exodeoxyribonuclease VII small subunit compare
SMc00556 -1.2 -4.9 DNA repair protein RadA compare
SMc00295 -1.2 -1.3 hypothetical protein compare
SMc01208 -1.2 -1.4 peptidyl-prolyl cis-trans isomerase B protein compare
SMc03773 -1.1 -4.2 hypothetical protein compare
SMc03836 -1.1 -1.3 acyl-CoA thioesterase i protein compare
SMc01577 -1.1 -1.3 hypothetical protein compare
SMc03051 -1.1 -3.4 flagellar biosynthesis repressor FlbT compare
SMc04121 -1.1 -1.4 uracil phosphoribosyltransferase compare
SMc01361 -1.1 -3.1 dihydroorotase compare
SMc02114 -1.1 -2.3 hypothetical protein compare
SMc02856 -1.1 -6.2 penicillin-binding protein compare
SMc01877 -1.1 -4.7 DNA repair protein compare
SMc02683 -1.0 -1.8 hypothetical protein compare
SMc03180 -1.0 -3.0 monovalent cation/H+ antiporter subunit C compare
SM_b20909 -1.0 -2.1 hypothetical protein compare
SMc04024 -1.0 -5.1 membrane-bound lytic murein transglycosylase compare
SMc00760 -1.0 -2.8 recombinase A compare
SMc04330 -1.0 -1.6 trimethylamine methyltransferase compare
SMc02451 -1.0 -1.5 hypothetical protein compare
SMc03181 -1.0 -5.0 monovalent cation/H+ antiporter subunit D compare
SMc03229 -1.0 -1.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03140 -1.0 -4.5 transcriptional regulator compare
SMc00691 -0.9 -3.2 site-specific tyrosine recombinase XerD compare
SMc02739 -0.9 -2.7 glycine betaine transport ATP-binding ABC transporter protein compare
SM_b20086 -0.9 -1.7 hypothetical protein compare
SMc03179 -0.9 -6.7 monovalent cation/H+ antiporter subunit A compare
SM_b21524 -0.9 -2.3 septum formation inhibitor compare
SMc03978 -0.9 -2.3 transketolase compare
SMa2034 -0.9 -1.4 hypothetical protein compare
SMc03127 -0.9 -1.2 ABC transporter permease compare
SMc01929 -0.9 -1.5 hypothetical protein compare
SMc03184 -0.9 -1.2 PH adaptation potassium efflux system G transmembrane protein compare
SMc01461 -0.9 -3.0 DNA helicase II protein compare
SMc00684 -0.9 -1.9 hypothetical protein compare
SMc02084 -0.9 -0.9 biopolymer transport transmembrane protein compare
SMc00103 -0.9 -4.7 alpha-halocarboxylic acid dehalogenase compare
SMc02861 -0.9 -1.5 phosphate transporter compare
SM_b20450 -0.9 -6.1 regulatory protein compare
SMa0341 -0.9 -1.2 hypothetical protein compare
SM_b20307 -0.9 -0.7 dihydroxyacetone kinase compare
SMc00331 -0.9 -2.0 hypothetical protein compare
SMc01522 -0.9 -1.3 hypothetical protein compare
SM_b21028 -0.8 -2.6 hypothetical protein compare
SMc04881 -0.8 -1.6 virulence associated protein compare
SMc02582 -0.8 -2.5 hypothetical protein compare
SMc02470 -0.8 -2.5 transcriptional regulator compare
SMc00511 -0.8 -3.0 D-ribulose-5-phosphate 3-epimerase compare
SMc01039 -0.8 -2.0 hypothetical protein compare
SMc00352 -0.8 -1.4 acetyltransferase compare
SMc02232 -0.8 -1.7 hypothetical protein compare
SMc03878 -0.8 -1.8 acetoacetyl-CoA reductase compare
SM_b22001 -0.8 -0.8 hypothetical protein compare
SMc03183 -0.8 -3.9 monovalent cation/H+ antiporter subunit F compare
SMc01357 -0.8 -2.3 hypothetical protein compare
SMa0314 -0.8 -1.9 hypothetical protein compare
SMc01200 -0.8 -4.1 hypothetical protein compare
SMc00353 -0.8 -0.7 transmembrane protein compare
SMa2281 -0.8 -1.0 hypothetical protein compare
SMc00451 -0.8 -4.1 processing protease compare
SMc03235 -0.8 -2.5 hypothetical protein compare
SMc01012 -0.8 -1.2 hypothetical protein compare
SMa1660 -0.8 -2.3 hypothetical protein compare
SMc01505 -0.7 -1.1 hypothetical protein compare
SMc03967 -0.7 -0.9 Holliday junction resolvase compare
SMc03279 -0.7 -1.5 transposase number 2 for insertion sequence ISRM28 compare
SMc02979 -0.7 -2.6 hypothetical protein compare
SMc02799 -0.7 -1.7 16S rRNA methyltransferase GidB compare
SMc00569 -0.7 -1.5 hypothetical protein compare
SMc02780 -0.7 -2.2 succinate-semialdehyde dehydrogenase [NADP+] protein compare
SMa0575 -0.7 -1.1 hypothetical protein compare
SMc01516 -0.7 -1.6 hypothetical protein compare
SMc01235 -0.7 -4.8 excinuclease ABC subunit A compare
SMc03871 -0.7 -2.3 ABC transporter ATP-binding protein compare
SM_b21212 -0.7 -1.7 hypothetical protein compare
SMc01700 -0.7 -3.4 peptidyl-prolyl cis-trans isomerase A compare
SMc01579 -0.7 -0.8 hypothetical protein compare
SMc03850 -0.7 -0.8 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMa0112 -0.7 -1.6 hypothetical protein compare
SMc02308 -0.7 -1.7 hypothetical protein compare
SMc02476 -0.7 -2.6 hypothetical protein compare
SMc01280 -0.7 -1.2 protease compare
SMc01725 -0.7 -2.8 hypothetical protein compare
SMc01368 -0.7 -2.6 transport transmembrane protein compare
SMc03993 -0.7 -3.0 hypothetical protein compare
SMc01595 -0.7 -2.0 sensor histidine kinase transmembrane protein compare
SMc02041 -0.7 -1.6 short chain dehydrogenase compare
SM_b20823 -0.7 -3.6 cell surface saccharide synthesis protein compare
SMc02980 -0.7 -0.9 hypothetical protein compare
SMa1053 -0.6 -0.8 hypothetical protein compare
SMc01853 -0.6 -2.1 hypothetical protein compare
SM_b20258 -0.6 -1.4 transcriptional regulator compare
SMc02866 -0.6 -2.2 transcriptional regulator compare
SMa0211 -0.6 -0.7 hypothetical protein compare
SMc04297 -0.6 -1.8 transcriptional regulator compare
SMc01363 -0.6 -1.0 hypothetical protein compare
SM_b21671 -0.6 -2.7 hypothetical protein compare
SMc00557 -0.6 -2.5 alanine racemase compare
SMc02978 -0.6 -2.1 hypothetical protein compare
SMc01857 -0.6 -1.4 cell division protein MraZ compare
SM_b20509 -0.6 -1.6 transcriptional regulator compare
SMc02307 -0.6 -3.1 histidinol dehydrogenase compare
SMc01457 -0.6 -3.4 transport transmembrane protein compare
SMc02860 -0.6 -1.2 hypothetical protein compare
SMc02900 -0.6 -1.4 hypothetical protein compare
SM_b21480 -0.6 -0.8 hypothetical protein compare
SMc01826 -0.6 -1.2 ABC transporter permease compare
SMc02758 -0.6 -1.8 nucleotidyl transferase compare
SMa0093 -0.6 -1.6 Branched-chain amino acid aminotransferase compare
SMc01146 -0.6 -1.0 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc00228 -0.6 -4.6 ATP-dependent DNA helicase RecG compare
SMc01220 -0.6 -2.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02505 -0.6 -0.9 hypothetical protein compare
SM_b20117 -0.6 -1.7 sugar transferase compare
SMa0095 -0.6 -1.7 D-aminopeptidase compare
SMa5033 -0.6 -0.6 hypothetical protein compare
SMc00795 -0.6 -2.4 hypothetical protein compare
SMc03072 -0.6 -1.3 hypothetical protein compare
SMc00047 -0.6 -1.5 beta-lactamase signal peptide protein compare
SMc01813 -0.6 -2.9 hypothetical protein compare
SMc02306 -0.6 -0.8 hypothetical protein compare
SMc02573 -0.6 -1.2 hypothetical protein compare
SMa5031 -0.6 -1.0 hypothetical protein compare
SMc00948 -0.6 -3.1 glutamine synthetase compare
SMc01968 -0.6 -3.2 transcriptional regulator compare
SMa1398 -0.6 -1.6 3-ketoacyl-ACP reductase compare
SMc04386 -0.6 -3.4 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) compare
SMc02381 -0.6 -1.6 hypothetical protein compare
SM_b20774 -0.6 -1.5 hypothetical protein compare
SMa0265 -0.6 -1.9 dehydrogenase compare
SMc02738 -0.6 -3.0 glycine betaine transport system permease ABC transporter protein compare
SMc00602 -0.6 -2.7 excinuclease ABC subunit C compare
SMc02774 -0.6 -1.8 ABC transporter substrate-binding protein compare
SMc03923 -0.6 -3.8 glucose-1-phosphate adenylyltransferase compare
SMa1056 -0.5 -0.7 transcriptional regulator compare
SMa0070 -0.5 -2.6 ABC transporter permease compare
SMa5015 -0.5 -0.8 hypothetical protein compare
SMc03091 -0.5 -1.4 arginase compare
SMc02572 -0.5 -2.4 imidazole glycerol phosphate synthase subunit HisH compare
SMc00025 -0.5 -2.8 pyruvate phosphate dikinase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Paraquat dichloride in Sinorhizobium meliloti 1021

For stress Paraquat dichloride across organisms